HHsearch 1.5 NAME d1fv1b1 FAM FILE d1fv1b1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1fv1b1.a3m DATE Tue Mar 9 00:30:18 2010 LENG 98 match states, 98 columns in multiple alignment FILT 110 out of 849 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.7 EVD 0.4480 -0.4451 SEQ >ss_dssp CCBCCEEEEEECSSCSSSSSEEEEEEEEEEBSSCCEEEEEESSSBCCSSEEECCCEECSSSCEEEEEEEEECCCTTCEEEEEEECTTCSSCEEEEEEC >sa_dssp EEDDAECDCDDCEEDEDDDECDAAABADCACCBECECCBCCDECCBDEEDEDDDEDEDEEECBCBCBCACADDCEECDABACADBDCCEEDCECECDE >ss_pred CCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCEECCCCEECCEECCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEEC >ss_conf 94466799952787558974799999976668862699832750503673312013068713999999998066577499999838677875899739 >Consensus xxvxPxVxixxxxxxxxxxxxtLxCxaxxfxPxxixvxWxxxgxxxxxxxxxxxxxxxxdxtxsxxsxlxxxxxxxxxxtCxVxHxxlxxplxxxwxx >d1fv1b1 RRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA >UniRef50_UPI000175FFA4(469-570:898) PREDICTED: similar to signal-regulatory protein beta 1 n=1 Tax=Danio rerio RepID=UPI000175FFA4 E=4e-06 s/c=0.51 id=15% cov=97% ---PPEVSeIQFSEPNEEGGVVTMTAHASHFHPDIITFRWFCEGGELSPvsiPQALAAPRPDAEGFFSAMSQCRLPKAElergETRVWVTIHHTALKQPI TRQTR- >UniRef50_Q17NW8(127-223:467) Fasciclin, putative n=3 Tax=Culicini RepID=Q17NW8_AEDAE E=0.0003 s/c=0.48 id=15% cov=86% ---QPQIQLekpTSASAFEVNSEMVVHC-ISRYGNPAASMYWFLDDEPIYEGVSQPEYHEENNQGYSVYVTLRrhiLASDSGKRLICRAKHVA------- ---- >UniRef50_UPI000155BFA8(18-103:240) PREDICTED: similar to T cell receptor gamma chain, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BFA8 E=0.0008 s/c=0.52 id=15% cov=81% -KAPEPIKFFPSSLEQEKQNTeTYICLLKDFYPEIIRMHWKEEGSDKILESQQSEPLQVKDKYWQLSWLTVNKSSPGKIY------------------- >UniRef50_O75144(139-228:302) ICOS ligand n=15 Tax=Eutheria RepID=ICOSL_HUMAN E=0.0002 s/c=0.52 id=16% cov=92% -----SVPVVSAPHSPSQDELTFTCTSINGYPrPNVYWINKTDNSLLDQALQNDTVFLNMRGLYDVVSVLRIARTPSVNIGCCIENVLLQQNLTV---- >UniRef50_UPI000069FE61(129-223:230) UPI000069FE61 related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI000069FE61 E=0.0003 s/c=0.49 id=18% cov=87% ---RPQMTLLGPSLVEMKlyRSATFLCHAARYSPNALRIKWHLNNQSSQHRSYTYPAIQTSSNTFDQTAEVSIPAALWDqgvEVTCILEHET-------- --- >UniRef50_UPI0000E4A915(815-905:1500) PREDICTED: similar to nephrin n=3 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A915 E=0.0008 s/c=0.49 id=15% cov=93% ----PPVIAGIPDNINENQQTTVSCQADNGHPSPSFQWFIGSrNLSASASLQVSADAKNRIDATSQLRYLPMREDNGLALECNVIHDQLSQPMRV---- >UniRef50_UPI0000EE6E91(24-121:651) PREDICTED: hypothetical protein XP_002348043 n=2 Tax=Homo sapiens RepID=UPI0000EE6E91 E=0.0002 s/c=0.48 id=18% cov=92% ---QPFISLTgPSHRTSPGDSVPFNCTAVPFnsqdFSRDFNVTWLKDSDEHPASAQRLVPDNGGNDFITSKAWVTLTRQDvSSEITCEVTHRALAEPL-- ---- >UniRef50_P01880(12-95:384) Ig delta chain C region n=80 Tax=Eutheria RepID=IGHD_HUMAN E=0.0005 s/c=0.54 id=18% cov=81% ------------RHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKS-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 1241 * * * * * 794 * * * * * 1 0 * * * * * * 3541 0 0 R 2 4235 * * * * * * * 1823 * * * * 1725 1664 * 4437 * * * 2 0 * * * * * * 5570 0 0 V 3 3334 * 5496 4400 * * * 5173 * * * * * * * 5350 5000 419 * * 3 0 * * * * * * 7277 0 0 E 4 4154 * * 3748 * 5963 * * 2665 5753 * * 1190 4156 2817 6189 * 5208 * * 4 0 * * * * * * 8304 0 0 P 5 4766 * * * * * * * * * * * 82 * * * 5737 * * * 5 14 6740 * 0 * * * 8610 1000 0 K 6 5095 6106 4871 2967 6122 6268 6909 4540 3016 4424 5646 6102 5668 3221 3765 2855 2842 4937 * * 6 11 7019 * 0 * * * 8623 1000 0 V 7 4674 6535 * * 6154 * * 2670 * 3715 3894 * 4801 * * 6444 4721 862 * * 7 34 6642 6243 1000 1000 * * 8699 1000 0 T 8 5814 * 4979 4638 4824 * 4554 4349 4341 4868 * 4817 5718 4257 3824 1783 2464 6506 6633 5075 8 72 4355 * 289 2462 0 * 8682 2440 1000 V 9 4094 * 6301 5203 6369 6043 * 2046 * 1806 6599 * 5112 * * * * 1703 * * 9 42 5121 * 1071 932 * * 8720 2326 0 Y 10 * * 6261 4402 2495 3590 6748 3538 * 3799 5727 5522 4515 4704 * 2677 2897 5010 * 3889 10 177 4222 4008 1129 882 * * 8947 3376 0 P 11 5093 6602 6490 6441 6251 5495 3964 5074 6760 4499 6266 5362 1572 4606 4927 2517 3949 4101 6658 * 11 14 6704 * 0 * 197 2969 8977 1000 3352 A 12 3111 6739 * 4099 * 4151 5666 4913 2972 3828 * 4786 2064 5596 4213 3594 4959 4492 * * 12 44 5564 6798 953 1048 0 * 8951 1653 1000 R 13 4682 6508 5243 3080 6317 * 3577 6470 3166 6520 * 4456 3038 3591 3806 2505 4642 5128 * 6823 13 80 4816 5746 984 1016 * 0 9037 2651 1000 T 14 3398 * 4496 3684 * 5595 4551 3860 6994 4620 * 5144 2653 4352 3661 3088 3832 4107 6801 4953 14 45 5032 * 1257 782 504 1761 9041 2417 1948 Q 15 3593 * 5659 3964 5010 4193 4605 3009 4954 3466 * 4943 3662 6532 6677 3532 5207 2226 * * 15 79 4235 * 1013 987 0 * 9124 3465 1000 T 16 5961 * 4107 1992 6916 5634 6638 5923 4044 4176 6246 4182 4224 5499 4484 2935 3978 3584 6598 5200 16 79 4936 5579 1222 807 * * 9123 2359 0 L 17 5308 6049 3932 2570 4963 4534 5677 4396 4751 2702 5601 4577 3404 6707 5045 4095 5726 3314 * 5804 17 108 4615 4992 1316 741 * 0 9059 2676 1762 Q 18 5202 * 5058 3444 * 1400 4903 * 4650 * * 2446 5590 4296 4679 3383 6836 * * * 18 71 4657 6872 769 1275 341 2248 9009 2690 2938 H 19 5112 6725 3481 2711 * 3321 5275 * 3675 6543 6981 3514 5872 2803 3794 3570 3436 * * * 19 25 6766 6964 0 * * 0 9080 1000 1587 H 20 4966 * 4895 2680 * 4839 6563 5880 3680 5438 5156 4394 2655 3995 4263 3321 3091 4630 * 7003 20 78 4847 5788 400 2047 511 1746 9080 2703 2140 N 21 3089 * * 6572 6841 4820 4696 3764 6980 3085 5532 3965 5756 5157 5780 4364 5069 1551 * 5664 21 49 * 4903 * * 1458 653 9084 0 2231 L 22 4732 * 7051 5939 6847 * 4792 4414 4640 5852 * 5031 5670 4285 5158 4499 1063 3106 6790 6391 22 37 6965 5870 1000 1000 720 1348 9008 1000 3207 L 23 5767 * * * 3243 * * 3637 * 770 5308 * * * * * * 3001 * 4086 23 52 5182 7025 1000 1000 357 2191 9032 1913 2741 V 24 4449 * * 4972 * 5607 6551 4528 5671 4102 5811 4033 * 4358 4543 2247 1785 3343 * * 24 12 6956 * 2807 222 0 * 9109 1000 1621 C 25 5011 137 * * * * * * * * * * * * * * * 5296 * 4880 25 27 7017 6556 0 * * * 9090 1000 0 S 26 5269 6594 5265 3541 5834 * 2803 5922 7029 2572 6863 * 5805 3959 3641 2767 3301 4209 5305 * 26 0 * * * * 0 * 9076 0 1000 V 27 1380 * * * * * * 2486 * 4635 6476 * * * * 3341 * 1864 * 6313 27 0 * * * * * * 9090 0 0 N 28 4278 * 4030 3558 5795 6421 4774 5773 4335 5380 6707 3873 * 4429 4038 2318 2321 5149 6786 5559 28 0 * * * * * * 9090 0 0 G 29 * * 3309 5752 * 1248 5076 * 3538 * * 3136 4644 * 3223 3836 * * * 6262 29 37 6668 6036 0 * * * 9090 1000 0 F 30 5018 6661 5737 * 1045 3233 * 5674 6490 4913 * * * * 6324 3588 6830 6516 5331 2782 30 16 * 6513 * * 1025 976 9095 0 1696 Y 31 5870 * 6613 * 2560 6552 3687 * 3934 5877 * 4319 3410 5638 5877 2818 * * * 1693 31 11 7011 * 0 * 1000 1000 9081 1000 1692 P 32 5733 * 5992 5662 * * * 6477 * 4932 * 6556 404 5333 * 3978 4697 6865 * * 32 41 6550 5843 1000 1000 0 * 9095 1000 1000 G 33 2934 * 3503 3307 * 4763 6845 * 2935 4347 * 5047 2263 4767 4069 4065 5149 5653 6405 * 33 46 7056 5404 0 * 1000 1000 9082 1000 1724 S 34 3027 * 2648 3597 * 4437 4906 4952 7353 5732 6445 3234 3031 5200 * 3672 4039 3444 * * 34 74 * 4326 * * 0 * 9075 0 2636 I 35 3908 * 6208 5274 5450 * 6539 1521 5503 2709 4989 * 5549 * * 5848 5295 2177 6663 6593 35 35 * 5375 * * 0 * 9046 0 3505 E 36 4168 * 4362 4106 5921 * 4262 * 2958 5595 5807 3573 6604 3287 4503 2694 2706 4745 5975 * 36 0 * * * * 548 1662 9085 0 2244 V 37 6649 * * * 3578 * 6301 1913 * 2816 5055 * 6627 5928 * * 6598 1530 3778 * 37 0 * * * * 0 * 9089 0 1000 R 38 5127 * 5032 4193 5236 * 6786 6411 3584 6520 5149 5093 * 4074 3158 2851 1981 4651 4223 5043 38 28 * 5698 * * * * 9090 0 0 W 39 * * * * 4934 * * 6651 * 4305 5605 * * 6553 6634 * 5766 6322 283 6289 39 25 6735 6963 0 * 1000 1000 9066 1000 1637 F 40 * * 5800 4176 2864 6328 5745 4186 2935 2023 4374 * 5603 5034 5012 5568 4982 4675 5970 3499 40 31 6664 6438 3907 100 * 0 9079 1000 1591 R 41 5835 4735 5630 3641 * 4405 5000 6698 2159 3804 5368 4550 * 4508 2295 4736 * 3357 * 6480 41 32 5512 * 3776 109 1399 687 9048 1557 2190 N 42 5551 * 1982 4132 * 2833 5902 * 3127 6523 * 1947 5611 5005 5687 4165 * * * * 42 64 4833 6902 2493 282 * 0 9079 2349 1591 S 43 7003 5681 3131 5126 6300 1105 5718 6449 6853 6051 * 2604 6529 6301 4665 4542 5165 * * * 43 53 * 4805 * * 1538 609 9088 0 2140 Q 44 5682 6700 4870 2843 * 3766 4174 5113 2752 5168 6273 3911 5470 3051 3882 4419 4025 4202 * 6605 44 79 6787 4493 1000 1000 1520 619 9077 1000 3572 E 45 5380 * 5765 2266 6505 5185 6373 4532 3576 4075 * 4907 2445 6634 4702 3247 3415 4377 * * 45 37 6675 6019 0 * 392 2071 9076 1000 4320 E 46 5913 6417 5053 6516 6670 5657 6390 2138 6269 2317 6961 5673 4758 4861 3955 4035 5674 2429 6671 6842 46 31 6399 6717 1585 585 1037 964 9090 1000 2639 K 47 6838 * 4418 4118 * 4535 5175 4010 4328 4466 6619 5784 2844 4031 3182 2467 3527 5088 6354 6540 47 12 * 6888 * * 0 * 9073 0 2362 A 48 2950 5770 3347 3342 * 3376 5627 6000 4200 4622 6623 5970 3214 3573 5262 3305 4005 5587 * * 48 87 4837 5405 1827 478 * 0 9092 1865 1000 G 49 4327 * 4007 3469 6553 2215 5434 6919 6454 4980 * 3390 2989 4779 4036 3005 4473 * 6819 * 49 36 * 5325 * * 1940 436 9118 0 2760 V 50 3997 6669 4412 4605 5603 6572 5555 4025 4665 4854 5772 5345 5432 3069 4805 4077 2981 2031 * * 50 11 7010 * 3322 152 502 1768 9104 1000 3320 V 51 4492 * 5838 3212 4061 6667 5709 4068 4443 3321 6316 5651 4926 3058 4474 3615 2869 4993 * 4175 51 67 6854 4772 2807 222 * 0 9109 1000 1369 S 52 5787 * 4478 4631 4934 6900 3874 5805 5703 3617 6796 4357 5610 3168 4869 2920 2022 4039 * 7411 52 86 4565 6000 900 1108 870 1143 9121 2885 3556 T 53 4300 * 5316 4331 5307 3457 4709 5127 5165 4972 * 5863 3727 4631 4713 2539 2319 3918 6645 6408 53 72 5171 5578 2320 322 748 1306 9106 2267 3144 G 54 3715 * 3768 3419 * 4496 5687 4670 4306 * 5578 3801 2848 3613 4920 3746 3587 3467 * 6813 54 17 * 6452 * * 0 * 9073 0 2846 L 55 4176 * 4796 5140 4216 4436 5004 4724 5128 4504 5223 4361 2843 4445 4421 4149 3131 3401 6996 4102 55 50 6787 5325 2000 415 * 0 9085 1000 1000 I 56 3563 * 4816 5804 6639 4098 5112 4129 4267 2848 4770 4900 5519 4325 2710 3951 4180 3623 * 5572 56 25 7097 6639 0 * 1939 436 9069 1000 2827 Q 57 4462 * 4467 3434 5757 4980 5689 5430 3043 4456 6037 5095 2004 4033 3409 4209 5291 6911 * 5626 57 14 6678 * 1000 1000 1838 473 9066 1000 2751 N 58 4378 * 2796 3428 6765 4060 5022 * 4973 6784 5435 2403 5365 4976 3664 3169 3338 6772 * 6978 58 25 * 5876 * * 0 * 9080 0 2238 G 59 3552 * 4016 4239 * 2050 6522 * 4210 5124 * 4030 3504 4821 5345 2842 4438 5157 * 4583 59 24 7056 6782 0 * 1000 1000 9098 1000 1682 D 60 5116 * 1394 4108 * 4209 6664 5916 4660 5722 * 3084 5061 6475 6559 3207 3416 * * 5507 60 14 * 6718 * * * 0 9088 0 1693 W 61 5452 * 5914 5796 4764 1300 5169 * 4936 3421 * 5253 7002 5764 4329 3392 4497 5813 5823 3865 61 43 5090 * 1021 979 561 1633 9078 2307 2331 T 62 4961 * 5074 5686 4213 4944 * 6321 4450 3424 5766 4787 6779 * 4601 3157 1444 5602 * 3723 62 34 7127 5932 2000 415 * 0 9091 1000 1000 F 63 5933 6577 5764 5635 1625 6905 5665 6516 6360 4736 5744 6702 * 6554 6722 5636 3506 4379 5244 1782 63 60 5630 5588 940 1063 556 1645 9108 1784 2229 Q 64 4516 6333 6486 6448 6352 * 5475 6967 5566 6676 5829 3979 5694 2944 4355 1505 2817 4676 * 4829 64 42 6743 5678 1585 585 1467 648 9084 1000 2280 T 65 2840 6311 5681 5094 5507 6260 * 4198 4608 3545 4523 6551 * 4438 3292 2921 3927 2453 * * 65 27 6551 7027 1000 1000 1979 422 9073 1000 2683 L 66 4850 6617 * 5152 4111 * 5151 5085 5493 2893 5042 4063 * 4129 3673 2890 2573 4382 5261 4266 66 0 * * * * * 0 9068 0 2681 V 67 3707 6746 5947 7028 5095 6849 3675 5614 4838 3818 * 5287 6486 6773 4809 1300 4849 3365 6403 5920 67 0 * * * * 943 1060 9068 0 2681 M 68 5527 * 5635 5182 4681 * 5180 3079 * 2942 6602 5804 * 3913 5945 2728 2505 4654 4577 3377 68 36 7037 5884 0 * 1058 944 9095 1000 1591 L 69 5941 4755 * * 5479 5701 * 4808 * 953 5239 6411 6637 6608 5273 * 3960 2926 6249 4071 69 110 3937 6973 2128 375 547 1663 9079 3690 2281 E 70 4346 * 4653 3917 5952 5623 5094 7003 3772 3717 6832 3609 3941 5191 3406 4093 2268 4068 * 5738 70 47 5637 6418 1330 731 * 0 9103 1752 1731 T 71 4738 * 6680 * 3501 6397 6749 2571 * 2194 5855 5810 6550 * * 3627 4172 1934 * 6330 71 40 6684 5844 0 * 562 1633 9081 1000 2337 V 72 3844 * 4658 4218 * * * 5207 3393 * 6353 5720 2706 3764 4374 2664 2871 3491 * 5319 72 64 4536 * 946 1056 * 0 9084 3195 2295 P 73 3529 * * 3326 * 5282 6490 6809 4200 3266 * 5548 2039 6752 3045 2927 6835 6455 3994 * 73 103 4115 6455 1572 591 0 * 9084 3738 2295 R 74 3978 * 3640 2259 * 3455 5920 * 4297 5015 4138 3704 * 3930 6607 2716 3522 * 6759 * 74 139 3445 * 1361 711 * 0 9080 4634 1000 S 75 4638 6467 2086 3027 * * 4051 6562 5059 5100 4798 3526 4450 3758 3485 3520 5724 * 6486 6478 75 170 3167 * 1427 671 * 0 9080 4912 1000 G 76 3672 * 3202 2951 * 1581 6589 6380 4294 6554 6649 4210 * 4792 5175 3833 6298 7002 4414 * 76 62 4583 * 1294 756 0 * 9080 2755 1000 E 77 3486 * 2935 4410 6633 2203 4507 5766 3660 4645 5139 4363 * 4592 4451 3654 3874 6332 * * 77 96 3963 * 1585 585 * * 9108 3804 0 V 78 4428 * 6462 2789 * 5001 5195 5222 3217 3949 6764 3749 5777 5176 3603 3024 3311 3258 * * 78 25 5859 * 1585 585 * * 9108 1725 0 Y 79 * 6383 * * 2501 * 5094 3459 * 2757 6434 * * * * * * 2860 * 1344 79 40 5180 * 1121 888 * * 9108 2350 0 T 80 5330 * 5074 5240 * 5861 * 3644 3753 6636 6457 5911 * 5989 4322 2135 1477 4975 5316 * 80 38 5270 * 1585 585 * * 9108 1802 0 C 81 * 84 * * * * * 5706 * 6383 * * * * * * * 5316 * * 81 0 * * * * * * 9108 0 0 Q 82 4788 6608 6731 2918 * * 5350 4004 5156 4386 4740 5309 * 3547 2374 5158 4216 2414 4695 * 82 0 * * * * * * 8886 0 0 V 83 2382 * * * * 5451 * 3687 * 6482 5813 * * * * 6191 5499 658 * 6770 83 0 * * * * * * 8886 0 0 E 84 4333 * 5749 2286 * * 4318 5276 3181 6445 6310 4071 * 3160 3646 2848 3538 6686 5721 6433 84 15 * 6565 * * * * 8883 0 0 H 85 * * * * * * 307 * * * * 3052 * 4696 * * * 6516 * 5537 85 30 5621 * 3138 174 * 0 8808 1729 1000 P 86 4607 5337 4357 2434 * 6495 * 5233 3333 5563 * * 2208 4322 3656 3497 4560 5321 5151 6327 86 37 5308 * 1492 634 0 * 8700 1724 1000 S 87 2005 5303 5250 * * 2176 * 5432 * 6792 * 4853 6903 5604 * 2048 3110 6257 * 6433 87 20 * 6194 * * * * 8646 0 0 V 88 5209 * 6036 * 5249 * 6283 5852 * 613 6143 * * 6288 6319 3203 5271 4013 * 6445 88 19 6221 * 0 * 0 * 8340 1000 1000 T 89 4402 * 5165 3000 * 6246 5846 * 3252 3788 * * 4118 2757 4407 2626 2614 6191 * * 89 41 5149 * 0 * * * 8369 1683 0 S 90 4139 * 5161 2262 5991 * 4633 * 3346 5867 * 4603 5976 1989 5361 2865 4606 5397 * * 90 24 * 5923 * * * * 8358 0 0 P 91 5611 * 5756 4839 * * * * 3826 5960 * 4649 495 5801 5860 * 4774 5752 * * 91 0 * * * * * 0 7911 0 1000 L 92 * * * * * * * 1993 3495 1422 3206 * * 4935 * * 5528 3010 * * 92 32 5519 * 0 * 0 * 7878 1000 1000 T 93 4503 5435 3989 5202 * * * 4496 5835 3646 5662 * * 3634 2099 2928 2084 * * * 93 0 * * * * * * 7720 0 0 V 94 5771 * * 3523 5323 * 5173 * 3077 5284 * * 5538 5347 1973 * 5438 1511 * 5439 94 62 * 4572 * * * * 7561 0 0 E 95 * * 4399 2987 5185 * 3975 * 3500 * * * * 5000 3331 3854 1802 2969 * 4930 95 0 * * * * 0 * 6892 0 1000 W 96 * * * * 3138 * * 3699 * * * * * * * * 3444 * 586 4291 96 0 * * * * * * 6005 0 0 R 97 * * 3962 2034 * * * * 2811 * * * * 3426 1133 * * * * * 97 0 * * * * * * 5486 0 0 A 98 419 * * * * * * * * * * * * * * 1989 * * * * 98 0 * * 0 * * * 2622 0 0 //