HHsearch 1.5 NAME d1fnxh2 FAM FILE d1fnxh2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1fnxh2.a3m DATE Mon Mar 8 16:07:19 2010 LENG 88 match states, 88 columns in multiple alignment FILT 116 out of 7775 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.9 EVD 0.4189 0.1377 SEQ >ss_dssp CCSCCCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHTTCCCCCSSCSCSCEEEECCCSCC >sa_dssp EEEDBCACBACCDEECCEEDADEDACEDBEBEECEBDDCEEEDEDEBCACADACDEEDACDBBDECDDEEDEEDEDDECADCDEEEEE >ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCC >ss_conf 9777779976888888989999997420466512441367874310135899877999999999838989917974799983288669 >Consensus sxxxxxlfVxnLpxxxtxxxLxxxfxxxgxxxxxxxxxxxxxxxxxgxafVxfxxxxxAxxAixxlngxxxxgxxxxlxvxxaxxxxx >d1fnxh2 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQ >UniRef50_B9S3N2(13-105:483) RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3N2_RICCO E=3e-08 s/c=0.64 id=17% cov=98% ---NGSVYVCNLPQGTDEDMLAEYFGTIGLLKKDKrtgrpkiwLYRDKLTNEPKGDATVTYEDPHAAQAAIEWFNNKDFHGNLIGVFMAESKNKDE >UniRef50_B5XGE1(20-98:409) Nucleolysin TIA-1 n=1 Tax=Salmo salar RepID=B5XGE1_SALSA E=2e-07 s/c=0.73 id=16% cov=90% ---GSTLHIGNIHSAVDENVLVSILQQFFPGQGFQCKLFPdPNNSPDLYCFMTFADVNTATSALSILNGREVMG--KKLKVSWA----- >UniRef50_Q8TBY0(137-226:533) Probable RNA-binding protein 46 n=28 Tax=Chordata RepID=RBM46_HUMAN E=4e-07 s/c=0.62 id=17% cov=101% SLDNCRLFIGAIPKEKKKEEILDEMKKVteGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKE >UniRef50_P10080(38-122:294) Single-stranded nucleic acid-binding protein n=7 Tax=Saccharomycetaceae RepID=SSBP1_YEAST E=3e-05 s/c=0.58 id=16% cov=93% -----TIFIGNVAHECTEDDLKQLFvEEFGDEVSVEIPIKEHTDGHIPaskHALVKFPTKIDFDNIKENYDTKVV--KDREIHIKRARTPGQ >UniRef50_A0E2B4(125-211:664) Chromosome undetermined scaffold_74, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0E2B4_PARTE E=0.0001 s/c=0.55 id=16% cov=99% --RTNNLFVNNIPSNITQEQLSMFFEQFGQVFNCKIKKSNYlNHKPQFSGFVEYKNPQTTVDLMEIYLRQPLKVNGKILIIQPCKDKTQ >UniRef50_C1E9J6(318-400:966) Predicted protein n=2 Tax=Micromonas RepID=C1E9J6_9CHLO E=7e-08 s/c=0.70 id=17% cov=95% --KSWRVIIRNLAFKATEEDIRTAMSKAGFVWDLTVPRDFHNKPKGFAFAA-FTAKSDAERAVKEVNMTNIAG--RPVAVDWALSKTK >UniRef50_Q6FSA3(97-181:381) Strain CBS138 chromosome H complete sequence n=1 Tax=Candida glabrata RepID=Q6FSA3_CANGA E=0.0001 s/c=0.56 id=19% cov=98% -LKDSTVWMTNYPPTFQQRDIRNIFKDHKIVALNVRLPSLRFNSNRRFAYVDLPNMESLDKAIQLLNGKDINGY--KLVVKKSNPENR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 3171 * * * * * * * * * * * * * * 170 * * * * 1 0 * * * * * * 4616 0 0 I 2 4828 * * * * * * 1732 * 2397 2632 * * 4605 * 4541 4766 2382 * * 2 0 * * * * * * 6800 0 0 R 3 5692 * 2229 3314 * * * * 1898 * * 5717 4693 3418 2127 * * 5781 * * 3 0 * * * * * * 8009 0 0 D 4 * * 3876 3246 * 2687 6128 5994 4852 5653 * 1718 3607 * 4566 3137 4483 * * * 4 0 * * * * * * 8294 0 0 A 5 3053 4188 4614 * 6597 6369 6267 5920 5357 6066 * 4086 * 5401 2387 2917 2312 4834 6389 4715 5 0 * * * * * * 8590 0 0 N 6 6419 6625 * 5827 * 6275 5249 6633 2607 5490 * 2641 * 6704 3308 3556 1534 6423 * 6389 6 49 4899 * 1273 770 * * 8723 2487 0 L 7 * 6275 * * 6478 * * 2243 * 1054 6416 * * * * 6204 * 1957 * * 7 0 * * * * * * 8972 0 0 Y 8 * * * * 1080 * 4306 4456 * 5799 * 6766 * 6660 * * * 6599 3669 1715 8 0 * * * * * * 8972 0 0 V 9 6230 6745 * * * * * 1277 * 4480 4324 * * * * * * 1089 * * 9 16 6517 * 0 * * * 9003 1000 0 S 10 4306 * 5307 4572 * 1556 * 5927 3354 * * 4169 * 6983 2943 2642 4141 6779 * 6922 10 12 * 6857 * * * * 9009 0 0 G 11 5778 5500 4105 * * 2312 5306 * 4694 * 6537 887 6554 4859 7223 5654 * 6239 * * 11 0 * * * * 0 * 9020 0 1000 L 12 * * * * 5737 * * 1725 6246 853 5233 * * * * * * 3888 * 5797 12 13 6762 * 0 * * * 9023 1000 0 P 13 3295 6486 3679 * * 4876 5622 * 5863 6086 * 3687 1071 6946 5752 3173 4991 * * * 13 0 * * * * * * 9022 0 0 K 14 5803 6248 4885 3810 3666 6214 4550 5259 3035 5162 * 6987 2601 4048 3945 3321 4472 4836 6703 3946 14 0 * * * * * * 9022 0 0 T 15 4374 6788 2648 3731 6239 3581 5211 6486 3485 6448 * 3425 * 4447 5231 2763 3074 7020 5480 6580 15 11 7073 * 1000 1000 * * 9022 1000 0 M 16 2867 4716 * * 5268 * * 3153 6694 3201 3869 * * 6714 * 5122 2766 2218 3831 5096 16 0 * * * * * * 9022 0 0 S 17 7028 * 2882 5442 7106 6338 * 6943 3553 6714 * 3054 5877 4941 4842 3010 1419 6917 * * 17 0 * * * * * * 9022 0 0 Q 18 4934 * 3134 1569 5694 6783 5794 5427 3401 6738 5487 5037 5366 3391 5281 4540 4124 5234 5829 * 18 27 5742 * 1000 1000 * * 9022 1603 0 K 19 3480 * 2619 1751 6665 5373 * 6495 4476 4687 6220 4859 * 3247 4070 5909 3951 5862 6581 * 19 0 * * * * * * 9022 0 0 E 20 3769 6950 1864 2370 7021 * 4932 6927 4369 6024 7027 4831 * 2999 4646 4886 4527 4521 * 6741 20 0 * * * * * * 9022 0 0 M 21 * * * * 6507 * * 2235 * 845 4949 * * * * * * 2415 * * 21 11 7028 * 1585 585 * * 9022 1000 0 E 22 4043 5885 6783 2908 5847 5277 5795 4582 2539 3339 5959 6766 * 4319 2337 5130 4943 5643 * 4270 22 25 6774 6947 0 * * * 9022 1000 0 Q 23 3957 * 2190 2551 6072 5770 4512 6996 3856 5792 6577 3780 7102 3867 3779 3556 4379 6820 * * 23 28 6733 6652 0 * * 0 9017 1000 1000 L 24 3847 6757 * 4231 2892 * 3766 2832 5053 1964 4230 * * 5095 5770 * 4450 4112 * 5127 24 14 6746 * 2000 415 * 0 8996 1000 1659 F 25 6325 4464 * * 728 6859 * 5109 * 2528 4476 6726 * * * * * 4710 6274 5518 25 36 6790 6012 0 * * 0 8996 1000 1659 S 26 3186 * 5689 3138 * 3835 7010 6527 3093 4938 5254 4516 * 4258 4162 1729 5996 6600 6265 * 26 0 * * * * 997 1003 8991 0 2699 Q 27 3891 6330 5320 3037 * 5113 6472 5804 2414 5917 5765 5725 3226 2700 3719 3692 4645 5676 * * 27 33 * 5458 * * 0 * 8993 0 1685 Y 28 4116 4076 5601 7079 1502 6562 4304 3766 * 3874 7005 * * 4733 * 5146 5391 3984 * 2853 28 131 4133 5082 1616 570 559 1638 9013 3446 2397 G 29 4431 5989 4102 5708 5757 748 6868 5468 5455 6228 5715 6477 6760 * 6550 4146 6295 5356 * 4821 29 103 4896 4826 755 1296 407 2024 8975 2476 2858 R 30 6118 6686 4410 3822 4747 3158 6716 4075 3419 4656 * 4701 3288 4489 3786 4100 3108 4358 * 5271 30 23 5995 * 2372 310 294 2441 8955 1741 3208 I 31 4216 4990 * 4798 5296 5237 5665 2572 3916 3004 6796 5218 4234 5846 5841 5777 4847 1932 * 6753 31 0 * * * * * 0 8998 0 1000 I 32 5352 4231 5199 3471 6570 4420 4819 3336 3172 3399 * 5276 6652 4788 4420 3773 4544 2840 5401 6732 32 14 6685 * 2585 263 0 * 8998 1000 1000 T 33 3677 * 3551 3623 6859 3919 5346 4869 3612 5955 5585 3862 5156 4743 3596 2822 5476 3629 6578 5006 33 13 6774 * 1000 1000 * * 9022 1000 0 S 34 4039 3323 4571 4541 5032 5923 5163 2612 4748 4243 4894 5831 5578 * 4324 5443 5737 2023 6942 7018 34 22 7048 7037 2585 263 * * 9022 1000 0 R 35 4115 5583 4238 3975 4994 5206 4578 4219 2832 5255 6676 5210 6554 5287 2513 5852 5041 2799 5986 5119 35 11 7084 * 2322 322 0 * 9019 1000 1000 I 36 4410 4846 5267 6738 3682 * 6448 2548 4081 2715 3954 * 4388 4767 4390 5742 4847 2827 * 5636 36 0 * * * * * * 9022 0 0 L 37 4847 5360 6741 5100 4136 7067 5661 2758 5217 2961 3511 6023 3228 6703 3872 5861 4839 2923 5735 5342 37 27 6708 6783 0 * * * 9022 1000 0 L 38 5969 5587 5115 4441 5729 5788 4848 4365 3685 3231 5070 4699 3795 6928 2726 4065 3408 3613 * 4365 38 21 * 6122 * * * 0 9013 0 1000 D 39 4451 * 2293 4449 5244 4636 4046 6800 4082 4533 5370 3442 3987 4053 3549 4749 4916 5118 * 4574 39 13 6786 * 1000 1000 559 1639 9015 1000 2373 Q 40 4467 * 3873 4114 5325 4389 5857 6484 2465 4256 5398 4733 3378 4414 3352 3862 4468 4349 * 5116 40 47 4949 * 2650 250 0 * 9013 2848 1000 A 41 3870 7020 3523 3375 4290 4095 4337 4591 3652 5611 * 4600 4099 4061 3676 3781 4423 5435 * 4065 41 181 5023 3516 1496 632 * * 9022 2238 0 T 42 5665 * 4176 4953 5828 3952 5712 4911 3686 6527 6241 2984 4945 5849 4240 2622 2082 6855 * 5637 42 41 * 5165 * * 947 1055 8939 0 4887 G 43 6735 * 4482 5362 5725 1537 5746 6889 3427 4774 5461 3109 4366 3839 3962 4616 5600 5717 * * 43 20 6192 * 2000 415 2930 203 8937 1000 4252 V 44 4502 * * 4264 5400 4199 4522 5624 2224 4195 * 4057 5069 3597 2660 3909 4819 4540 * 5835 44 23 5962 * 655 1455 1743 512 8945 1717 4123 S 45 5103 5658 5165 4014 4803 3699 3821 5060 4469 5264 5876 3439 2811 5135 4345 2471 5289 5013 * 6598 45 37 6726 5980 2322 322 1289 759 8958 1000 3338 R 46 4799 * 6220 6982 6447 4757 6921 5041 2278 4875 5843 4689 4651 3510 2066 4652 3574 4542 6930 5801 46 30 6726 6517 2322 322 1220 809 8973 1000 3265 G 47 4079 4986 5844 * 4641 1171 4853 5416 * 5920 6447 5216 5778 4562 3408 4869 5209 4237 5854 6860 47 73 4344 * 2369 310 426 1967 8963 3291 2800 V 48 5237 3358 5091 6685 1941 5529 5695 4656 6886 4919 5274 4578 6661 4937 5213 5211 4868 3711 * 2479 48 35 7123 5921 1000 1000 * 0 9004 1000 1000 G 49 1148 3266 6589 * 5790 2079 * 6712 7177 6455 * * * * 4709 4797 6321 4268 * 6232 49 37 5313 * 2470 287 605 1546 8986 2338 2432 F 50 4904 * * 5864 871 4479 4652 6037 7016 4148 6817 5817 * * 6573 * 5708 5748 4764 2978 50 0 * * * * 0 * 9018 0 1000 I 51 3715 4135 * * 5192 * * 2312 * 3400 6472 * * * * * * 937 * 6665 51 25 6724 7007 1585 585 * * 9022 1000 0 R 52 4594 5768 4025 1879 6737 5791 6673 * 3671 5479 6235 4880 * 3125 4450 4460 2950 4108 * 5143 52 15 * 6577 * * 0 * 9017 0 1000 F 53 6322 * * * 827 * * * * 4684 4029 * * * * * * 5789 * 1710 53 27 5767 * 1585 585 * 0 8998 1668 1000 D 54 4185 * 3128 2773 5132 4979 5898 6654 3837 4327 4820 3794 4323 4655 5241 3300 3682 4453 * 5111 54 12 6889 * 1585 585 0 * 8998 1000 1000 K 55 5959 5260 2485 4672 6848 7360 5310 6509 4742 * 6507 2966 * 6741 3528 2189 2477 6551 7146 * 55 0 * * * * * * 9022 0 0 R 56 4496 * 5895 3201 5516 6865 3329 3411 3663 5877 6863 5573 2858 5282 2900 4682 5475 3665 * 4545 56 10 7146 * 1585 585 * * 9022 1000 0 I 57 3778 * 3164 1826 6780 4652 6007 5553 3813 * * 5448 5311 3400 4829 3193 4365 5010 * 6690 57 0 * * * * * * 9022 0 0 E 58 2797 4862 2281 2815 * 5562 4703 4819 * 4766 * 6848 6658 3587 * 2534 5678 4801 * 6338 58 0 * * * * * * 9022 0 0 A 59 648 4969 * 6981 7012 5382 * 5556 * 5936 6240 * 5493 5833 5942 5159 4108 3678 * 5681 59 0 * * * * * * 9022 0 0 E 60 3129 * 2998 2620 5221 * * 4206 3361 4175 4714 5502 6764 3547 4564 5041 3642 4536 * 6239 60 0 * * * * * * 9022 0 0 E 61 3443 * 3598 3524 * 6690 5506 5232 2780 3969 5258 4359 * 3486 2834 3604 4958 5304 * 5228 61 0 * * * * * * 9022 0 0 A 62 545 3197 * * 7067 6771 * 5090 * 5018 * * * * 6509 5243 6981 3782 6551 * 62 11 * 7047 * * * * 9022 0 0 I 63 4872 6780 * * 5449 * 5607 1676 4443 2186 3254 * * 5424 4583 * 6861 2756 * 6945 63 32 * 5502 * * 0 * 9018 0 1000 K 64 2879 6428 4144 2952 * * 7018 * 2638 7171 * 3477 * 2656 3377 3421 4773 5906 * * 64 11 * 7009 * * 0 * 8978 0 1764 G 65 2996 5884 5293 3463 6942 4948 5559 4390 2397 5433 4714 4039 * 3613 3808 4160 3876 5362 6690 6809 65 27 6973 6545 2000 415 0 * 9014 1000 1000 L 66 4938 6861 * 6264 2865 * * 4407 6069 1150 2797 * * * 6636 6860 4772 4959 * 3956 66 23 * 5967 * * 0 * 9009 0 1000 N 67 6743 * 2594 5312 * * 2883 5622 4811 6539 * 1312 6689 3930 5286 3965 5751 6481 * * 67 13 * 6822 * * * 0 9016 0 1631 G 68 6699 6771 3833 4774 6466 1074 6955 6359 3794 * 6040 2532 6673 5143 5836 4593 6551 * * * 68 0 * * * * 626 1506 9001 0 2215 Q 69 4109 5865 6570 6974 3800 4707 4950 5351 2949 4411 5888 * * 3418 3287 3495 3133 3830 7026 3848 69 24 5896 * 0 * 0 * 9007 1755 1000 K 70 4970 * 4044 3784 5198 5601 4634 5101 3812 3362 4184 4201 4013 4187 4076 4263 4144 3111 6241 5261 70 16 6487 * 0 * * * 9017 1000 0 P 71 5657 6907 * 5385 2922 6818 * 1992 * 2135 5711 * 4316 5603 * * 6487 2871 5974 3747 71 114 5124 4400 1231 801 * * 9017 2359 0 L 72 4837 6859 3054 3286 4349 4325 4537 4157 3724 3388 3888 5207 4016 4714 3921 4702 * 4719 * 5198 72 149 4622 4124 1120 889 1497 631 8983 2950 3648 G 73 * 6753 3484 4662 4675 888 6474 4434 * 4466 5524 4767 5777 * 6701 5597 5321 4721 * 6702 73 257 * 2618 * * 990 1010 8954 0 4812 A 74 4166 6455 4919 5409 4695 2948 4822 5408 3147 5118 5372 3233 * 4840 2987 3003 6725 4864 6312 4846 74 144 5735 3716 2614 257 1831 476 8817 1697 6367 A 75 4164 * 3690 3337 6719 2361 5408 5134 3109 4961 6158 3407 4554 4885 4583 3677 4676 5653 * * 75 105 5238 4512 893 1116 272 2542 8820 1759 6509 E 76 5282 * 4953 4773 5503 6635 4371 3698 2506 3102 5103 6663 4755 3813 2320 5028 6379 4649 6068 6561 76 66 4839 6724 1199 825 654 1456 8971 2810 4332 P 77 4999 * * 4011 6813 5758 6624 4729 2810 4555 6809 4783 2057 4230 3246 5059 3052 4660 6371 * 77 10 7136 * 1585 585 0 * 8984 1000 2720 I 78 5155 6794 * * * * * 1970 * 1303 3747 * 6923 * * 6258 * 2347 6638 * 78 26 6948 6661 0 * * * 9008 1000 0 T 79 5291 * * 3791 4976 * 4220 6515 2437 7145 4583 5631 * 3130 2110 4360 4977 3547 * 4632 79 0 * * * * 0 * 8997 0 1000 V 80 3703 6897 * * 5186 * * 2550 * 3324 4977 * 6662 * 6822 5560 6911 924 * 6658 80 0 * * * * * * 8988 0 0 K 81 4012 5760 3012 3035 * 5415 6430 * 2591 6917 6326 3787 * 3910 2586 3218 5574 * * 5802 81 41 6546 5826 1585 585 * * 8875 1000 0 F 82 6019 * * 6546 2343 5411 5632 3525 4777 3853 6639 * 3972 6313 3029 * * 4043 2662 3145 82 14 * 6722 * * 0 * 8785 0 1285 A 83 734 6335 * 6563 6538 4391 * 6430 4991 * * * 4417 6237 6785 3054 4811 4341 * * 83 17 6433 * 2322 322 0 * 8782 1000 1000 N 84 * * 2314 3980 * * 6329 5475 1845 5093 * 2721 5554 5646 3403 5478 4240 5046 * * 84 13 6782 * 0 * * * 8683 1000 0 N 85 5513 * 3222 4910 * 4763 * 6767 3997 * * 2998 2234 * 4826 2424 2762 5487 * * 85 21 6101 * 1000 1000 * * 8643 1000 0 P 86 5274 * 3419 2618 * * * * 2131 * * 5065 1759 4092 4038 4483 * * * * 86 0 * * * * * * 8412 0 0 S 87 3777 5771 5076 2646 * 5928 5926 * 3202 * * 3267 5881 5723 4484 1916 3189 * 5745 * 87 0 * * * * * * 8243 0 0 Q 88 * * * 2238 * * * * 1903 * * * * 1584 2418 * * * * * 88 0 * * 0 * * * 7694 0 0 //