HHsearch 1.5 NAME d1fcda3 FAM FILE d1fcda3 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1fcda3.a3m DATE Mon Mar 8 22:40:01 2010 LENG 74 match states, 74 columns in multiple alignment FILT 24 out of 28 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.4252 0.2713 SEQ >ss_dssp CCCCCEEEEEEEEEETTEEEEEEEEEEECSSSSCEEECTTCCEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTC >sa_dssp EEEDEDEDCECDDEDEEDBCCDCCDCDCCEEEEDEEDDEEDEDEBDEECDEECBEDBADEBDDDEEEDDEEEEE >ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 95783400465343676327885323122348806430577846787889999999899899999645687419 >Consensus pxxPxfxNTCYSlvxxxxgixVaxvYxxxexxxxixxxxgsGgvSpxdaxxxxrxxeaxyaxxWxxxitxDxFG >d1fcda3 PGTPSYLNTCYSILAPAYGISVAAIYRPNADGSAIESVPDSGGVTPVDAPDWVLEREVQYAYSWYNNIVHDTFG >UniRef50_Q1GY45(354-419:419) Sulfide dehydrogenase (Flavocytochrome), flavoprotein subunit n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GY45_METFK E=9e-06 s/c=0.78 id=36% cov=91% --TPVFANTCYSYVSAEEAMHVANVYRYDANSGEMKPAPG-GGVSHARSVEEARE-----ARAWAVNIWHDVLG >UniRef50_C6QGH5(361-430:438) Flavocytochrome c sulphide dehydrogenase flavin-binding n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QGH5_9RHIZ E=2e-15 s/c=1.19 id=25% cov=96% ----RYHNTCWSMVAPGDSAKIGGDYSPGEKNGKPFLKGENEFISQPDDSPAVRLETNQESQDWYQTVVADLFG >UniRef50_A8LJ37(355-422:422) Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain n=3 Tax=Alphaproteobacteria RepID=A8LJ37_DINSH E=2e-13 s/c=1.13 id=27% cov=91% ----KFSNTCWSLIATEDGVKVGASYEATEEKIA----KTSGFISNTGEDAALRKATYEESLGWYAGITTDMFG >UniRef50_Q130M5(387-452:452) Twin-arginine translocation pathway signal n=6 Tax=Rhodopseudomonas palustris RepID=Q130M5_RHOPS E=1e-12 s/c=1.13 id=28% cov=91% ----RFTNHCWSGIAPDDAVKNGARYAPQ-DGKIVASDPY---TSQLDETPQLRAKQAREAAGWYAGMTTDIFG >UniRef50_C1XWX1(365-428:431) Sulfide dehydrogenase (Flavocytochrome), flavoprotein subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWX1_9DEIN E=0.0001 s/c=0.74 id=25% cov=81% -------NVCYSFVDSEEAIWVSNAYSWDEAAKQIKAQ------STVDNQRSAANSTAAY--GWAQSLWQDMFG >UniRef50_B8ID41(355-426:426) Flavocytochrome c sulphide dehydrogenase flavin-binding n=5 Tax=Alphaproteobacteria RepID=B8ID41_METNO E=6e-21 s/c=1.40 id=45% cov=99% PVTPKLINTCYSLVAPGYGISVAGVYHP--VNGVLADVEGAGGTSPLDAPAELRTEEAAHAAAWYRTITGDVFG >UniRef50_D0L1U4(381-451:452) FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1U4_HALNC E=5e-14 s/c=1.11 id=27% cov=96% PIEPAFQNTCYALAGrDDYGMFVADFFRLKNGVITRDDYPR---YLPFKASDAQYQLSAVYLHAWMKSFTEDIF- >UniRef50_UPI00016AF72D(364-430:431) FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AF72D E=9e-14 s/c=1.16 id=40% cov=92% ----RFMNACFSLLEPGYGISIAHHYAYEKAGNRITQL--SGGTTSLDASDEDLSREAAFSEDWFNIVTHQLF- >UniRef50_Q0A817(363-437:437) FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=7 Tax=Bacteria RepID=Q0A817_ALHEH E=7e-19 s/c=1.27 id=37% cov=99% --DPRFANACYSLVTPDHSVSVNAVYKLKEDPDAPAGVALdniAGGVSPIDASQTYRRREAAFTESWYRNFPKDIWG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 2719 0 0 G 2 * * 1880 * * 2903 * 2576 2414 * * * 3073 * * * * 3052 * * 2 0 * * * * * * 2719 0 0 T 3 * * 1637 3145 3756 * * * * * * * 3739 * * 4048 1490 * * * 3 100 3899 * 0 * * * 3205 1000 0 P 4 4064 * * * * * * * * * * * 89 * * * * * * * 4 0 * * * * * * 3474 0 0 S 5 3830 * * * * * * * 3399 2738 * * * * 1860 4535 3549 2128 * 4260 5 56 * 4713 * * * * 4157 0 0 Y 6 * * * * 1108 * * * * 3382 * * * * * * * * 3139 1614 6 0 * * * * 0 * 4158 0 1000 L 7 2330 * * 3923 3848 4260 3771 4694 * 4535 4011 3830 * 3830 * 4154 3131 3549 * * 7 0 * * * * * * 4157 0 0 N 8 * * * * * * * * * * * 0 * * * * * * * * 8 0 * * * * * * 4323 0 0 T 9 2902 * * * * * 4204 4673 * * * * * * * * 546 3512 * * 9 0 * * * * * * 4323 0 0 C 10 * 0 * * * * * * * * * * * * * * * * * * 10 0 * * * * * * 4323 0 0 Y 11 * * * * 4095 * * * * * 4378 * * * * * * * 2536 472 11 0 * * * * * * 4323 0 0 S 12 2961 * * * * * * * * * * * * * * 198 * * * * 12 0 * * * * * * 4323 0 0 I 13 * * * * 2409 4204 3976 4621 * 1244 3892 * * * * * * 3421 * 3828 13 0 * * * * * * 4323 0 0 L 14 2961 * * * * * * 2414 * 3335 * * * * * * 5223 842 * * 14 0 * * * * * * 4323 0 0 A 15 1591 * 2630 4095 * 2052 * * * * * * * * * 2926 3731 * * * 15 99 3911 * 0 * * * 4323 1000 0 P 16 4806 * 1867 4348 * * * * * * * * 1154 * * 3666 3148 * * * 16 0 * * * * * * 4323 0 0 A 17 4621 * 1696 1934 * 2030 4851 * 4851 * * * * * 5223 * 4378 * * * 17 0 * * * * * * 4323 0 0 Y 18 * * 2206 2823 4348 * 3019 * * * 4851 * * 4851 * * * * 4861 1451 18 0 * * * * * * 4323 0 0 G 19 1917 * * * * 877 * * * * * * * * * 2809 * 4378 * * 19 0 * * * * * * 4323 0 0 I 20 3892 * * * * * * 1023 * 4012 2543 * * * * * * 2271 * * 20 0 * * * * * * 4323 0 0 S 21 * * * * 3911 * 2475 * 2536 * * * * * * 1300 4861 * 3666 4012 21 0 * * * * * * 4323 0 0 V 22 * * * * * * * 2641 * * * 4204 * * * * * 348 * * 22 0 * * * * * * 4323 0 0 A 23 834 * * * * 2536 * * * * * 3731 * * * 3666 4348 3976 * * 23 0 * * * * * * 4323 0 0 A 24 1693 * 2961 * * 2059 4095 * * * 4498 2790 * * * 3740 * * * * 24 0 * * * * * * 4323 0 0 I 25 4660 * 3892 * 3911 * 4095 2721 * * * 4673 * * 4204 4298 * 1083 * * 25 0 * * * * * * 4323 0 0 Y 26 * * * * 2413 * 3789 * * * * * * * * * * * * 435 26 0 * * * * * * 4254 0 0 R 27 2702 * * 2947 * * 4901 * 3164 * * * * 4442 1407 2752 * * * * 27 68 * 4442 * * * * 4254 0 0 P 28 4276 * * * 4497 * 4824 * * 2099 * * 1920 * * * * 4706 3574 2007 28 149 * 3349 * * * 0 4224 0 1000 N 29 5242 * 2352 3870 * 3602 * 4515 2190 * * 3616 * 2714 * 3790 4110 * * * 29 238 * 2717 * * 1564 595 4146 0 1845 A 30 2210 * * 940 * * * * 3786 4107 * 3481 * 4547 * * * * * * 30 71 * 4379 * * 655 1455 4042 0 2514 D 31 1955 * 2215 4082 * 3799 * * 2778 * * 4612 4299 * * * * 2660 * * 31 58 4668 * 2322 322 588 1580 4217 1000 1675 G 32 4571 * 2742 4586 * 1649 * * 2547 * * 3267 4591 5228 * 4733 * 3900 * * 32 96 * 3961 * * 0 * 4260 0 1000 S 33 * * 4552 * * 1595 * 3005 1907 * * 3208 * * 5216 3983 * 4764 * * 33 0 * * * * * 0 4245 0 1081 A 34 2536 * * 3753 * * 4634 2933 2403 * * * * 4548 2584 4314 3353 4818 * * 34 79 * 4222 * * 0 * 4245 0 1081 I 35 * * * * 3145 * * 1199 * 3833 2888 * 3098 * 3878 * * 4026 * * 35 0 * * * * * 0 4176 0 1000 E 36 2503 * 3269 4743 3021 * * 5242 3035 4817 * * * 4404 * * 2459 2772 * * 36 0 * * * * * 0 4176 0 1000 S 37 3163 * 3286 2842 * 4589 * * 3867 3029 * 4809 4764 4083 3968 2552 4383 * * * 37 0 * * * * * 0 4176 0 1000 V 38 3203 * 4026 * * * * 3071 3732 4083 * * * 3553 * * 2954 1763 * 3878 38 328 * 2297 * * 0 * 4176 0 1000 P 39 3964 * * 1747 * 2825 * * 3162 * * * 1376 * * * * * * * 39 0 * * * * * 0 4063 0 2484 D 40 * * 4314 3596 * 921 * * * 3964 * 3738 * * 3733 * 4059 * * 3950 40 579 3964 1907 1585 585 539 1682 4063 1000 2484 S 41 2314 * * * * * * * * * * 3463 3515 * * 688 * * * * 41 0 * * * * 1484 638 3733 0 2847 G 42 * * * 3575 * 261 * * * * * * * * 3611 * * * * * 42 0 * * * * * 0 3906 0 2412 G 43 * * * * 2095 385 * * * * * * * * * * * * * * 43 0 * * * * 673 1423 3906 0 2412 V 44 * * * * * * * 2975 * 2330 * * 4308 * * * 2662 1337 * 3842 44 97 * 3937 * * 0 * 4158 0 1146 T 45 * * * * * * * * * 3673 * * * * * 399 2614 * * * 45 54 * 4762 * * 0 * 4176 0 1000 P 46 5421 * 4243 * * * 4419 * * 4620 * 4301 954 2582 * 4074 4534 * * * 46 0 * * * * * 0 4161 0 1000 V 47 3516 * * * 3874 4544 * 3632 5421 1753 * * 3876 * 3268 * 4301 2489 * * 47 0 * * * * 0 * 4161 0 1000 D 48 * * 816 4744 * 3141 * * 3193 * * 4419 4784 * 3494 * * * * * 48 48 4947 * 0 * * * 4238 1000 0 A 49 964 * 3883 3239 4570 * * * * 4947 * 3582 5031 * * 3000 * * * * 49 0 * * * * * * 4238 0 0 P 50 4947 * 1990 * * * * * * 5031 * * 3214 3582 * 1318 4170 4738 * * 50 53 * 4784 * * * * 4238 0 0 D 51 2404 * 2598 3067 * * * * * 4216 * * 2998 3639 2448 4623 4526 * * * 51 0 * * * * * 0 4159 0 1000 W 52 1795 * 4821 1568 * * * * 3706 * * * * 4131 * 3529 3639 * 4695 * 52 46 4993 * 1585 585 * 0 4159 1000 1000 V 53 3473 * 3229 * 4658 4216 * * 3713 2137 * * * 2352 * * 5417 3228 * 3639 53 60 * 4623 * * * 0 4159 0 1000 L 54 3465 * * * * * * 4001 * 2874 * * * * 642 * * * * 3840 54 85 * 4128 * * * 0 4130 0 1180 E 55 3265 * * 2382 * * * * 2578 3743 * 3341 * 3196 2724 3966 4685 * * * 55 92 * 4024 * * 1724 520 4046 0 1484 R 56 4183 * * 3138 * 4378 * 3234 3115 3207 * * * * 1317 4270 * * * * 56 55 4737 * 1000 1000 1606 574 4015 1000 1551 E 57 * * * 662 * 3975 * * * * * * * 4108 * 3824 2506 * * * 57 0 * * * * * 0 4054 0 1422 V 58 582 * * * * 4449 * * * * * 3776 * 4484 * * * 3122 * 4217 58 68 * 4445 * * * 0 4054 0 1422 Q 59 1711 * 4488 3319 * * * 4268 * 3904 4659 * * 2227 4055 * * 3797 * 4450 59 0 * * * * 1552 602 4083 0 1756 Y 60 * * * 2468 2849 * 4709 * * * * * * * * * * * * 639 60 92 * 4022 * * 0 * 4239 0 1492 A 61 814 * * * * 4547 * * * 3863 * * * 3982 * 2475 3708 * * * 61 0 * * * * * 0 4262 0 1000 Y 62 3428 * 3062 2441 * * 3863 4164 4732 4252 * * 4818 2921 3708 * * 4660 * 3251 62 0 * * * * 0 * 4262 0 1000 S 63 2144 * 2986 * * 2160 * * * * * 3342 * * * 1792 * * * 4782 63 0 * * * * * * 4238 0 0 W 64 * * * * * * * * * * * * * * * * * * 0 * 64 0 * * * * * * 4238 0 0 Y 65 2030 * * * 2556 * * * * * 2959 * * * * * * * * 1131 65 0 * * * * * * 4238 0 0 N 66 2566 * 4570 3801 * * 4784 * 3133 4589 * 3383 * 2567 2163 * * 4738 * * 66 0 * * * * * * 4238 0 0 N 67 4744 * * * * 2762 * 4097 * * * 1369 * * * 2275 2616 * * * 67 0 * * * * * * 4238 0 0 I 68 * * * * 2284 * * 917 * 3582 4170 * * * * * * 2986 * * 68 0 * * * * * * 4238 0 0 V 69 * * * * * * * * * * * * 3704 * * 4744 900 3249 2030 * 69 0 * * * * * * 4238 0 0 H 70 3070 * * 2320 * 4878 2474 * 2839 * * 3233 * 4576 * 3783 3239 * * * 70 0 * * * * * * 4238 0 0 D 71 * * 160 4419 * * * * * * * * * 4097 * * * * * * 71 0 * * * * * * 4238 0 0 T 72 3988 4028 * * * * * 1962 * 2986 2470 * * * * * 3097 2356 * * 72 0 * * * * * * 4238 0 0 F 73 * * * * 306 * * * * 4024 * * * * * * * * 2949 * 73 0 * * * * * * 4046 0 0 G 74 * * * * * 0 * * * * * * * * * * * * * * 74 0 * * 0 * * * 3452 0 0 //