HHsearch 1.5 NAME d1f00i1 FAM FILE d1f00i1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1f00i1.a3m DATE Mon Mar 8 16:20:17 2010 LENG 95 match states, 95 columns in multiple alignment FILT 103 out of 324 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.3 EVD 0.4758 0.1097 SEQ >ss_dssp CEEEEEEESCSEEESSSCCCEEEEEEEEETTEECTTCEEEEEESSSEESCSEEECCTTSEEEEEEECSSCEEECEEEEETTCCCCEECCCEEEEC >sa_dssp EDCDDCECEDEDBDCECECCACACACABEEEEDCDECDACADCECDECDEEDCDBDEEADADADACBEDDDEACABACBDEDEEDCEBDEADADE >ss_pred CEEEEEEECCCCEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCCEEECCEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEC >ss_conf 92269996678438479623799999998880148866999965880653002656986899999847651499999975945323344478849 >Consensus AxvsxlxxxxxxxxAdGxxxxtltatvxDxgnpvxgxxVxxxxxxxxxxxxxxxTdxxGxatxxltstxaGxxxVtAxvxxxxxxvxaxxvxFxx >d1f00i1 ASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFT >UniRef50_D1YVC6(472-551:1063) Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1YVC6_METPS E=0.0006 s/c=0.57 id=22% cov=83% AKMLSLNVTAEPKELTSGSEASIAVKVTDNGAPVSDATVSFISTGGKVTRLLPTTASDGTCYAKFTSNASGSFVLTVT----------------- >UniRef50_D0ZAL1(1089-1182:2359) Putative invasin n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZAL1_EDWTE E=5e-13 s/c=0.80 id=25% cov=98% AALSTLEAKPNQIVANGTEAAALALMLKDvNGNPISGQRIAFISSENTGIVISGATDEgNGRYSATLKGTRAGATQITVTVDGKPLAVSAATVT--- >UniRef50_D1P141(1654-1743:2373) Putative LysM domain protein n=2 Tax=Providencia RepID=D1P141_9ENTR E=2e-05 s/c=0.56 id=22% cov=94% -SISSLMPSVNHMQAGNQTGVTYYATVVDQfNNPLPSIHVSWHLQGKAEPFAhSTVTNAQGVAHVKVTSHQMGQLVMTAVLSSSQNKVATP------ >UniRef50_C1MAD0(971-1062:1180) EaeH n=2 Tax=Enterobacteriaceae RepID=C1MAD0_9ENTR E=3e-05 s/c=0.54 id=24% cov=88% -----IEPSTTSAVVSDVDNVAFTLHLTDtSGNSVSNRKLKITATGPSprdplvIDNTLVTTNGSGTATVNVHGNKAGRYTLTATLAEHGSNVSA----- -- >UniRef50_Q2C9A0(367-463:630) Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C9A0_9GAMM E=2e-08 s/c=0.62 id=22% cov=96% ---TGLVVTKDKAAADGKAQDTLQVTVEDaNGNPVAGLPIMVEvegSDSVTFKISPSMTDKDGHVTILVSDRKVGSVDITAhttRPSGERIDSEVESINF -- >UniRef50_UPI0001C33D72(1041-1132:1538) hypothetical protein CATC2_03030 n=4 Tax=Citrobacter youngae ATCC 29220 RepID=UPI0001C33D72 E=2e-06 s/c=0.58 id=24% cov=96% AVIQTLTLDTTGSLANGSAANKVTATVVDGkGNILPDQAITWTADKSTVrLTPSGNTGSDGRASVTFTDTVAETVILKAQLANGNNKIQSSQ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 5422 0 0 S 2 3736 * * 5074 * 5169 4604 * 1229 5520 5719 * * 3348 5352 2573 4401 5581 * * 2 0 * * * * * * 5956 0 0 I 3 5976 * * 5974 * * 5485 1875 5494 2365 4483 * * 5361 * * 5394 1457 * * 3 0 * * * * * * 6128 0 0 T 4 3088 * 5032 5819 5770 * 6292 5827 5817 3946 4998 * * 3894 * 1289 2930 3972 * * 4 0 * * * * * * 6259 0 0 E 5 4256 * 3409 3116 * 5308 * 5681 3868 5798 * 3671 5784 5076 * 2186 2053 * * 5642 5 0 * * * * * * 6274 0 0 I 6 * * * * 3641 * * 3122 * 758 5967 * * * * * * 2338 * * 6 0 * * * * * * 6365 0 0 K 7 4293 * 6155 4510 * * * 6793 3286 5372 5597 3712 6168 4183 * 2694 1579 3319 * * 7 0 * * * * * * 6365 0 0 A 8 1611 * * * 5973 6188 * 3073 * 3436 5436 * 3746 * * 3841 3912 2337 * * 8 0 * * * * * * 6360 0 0 D 9 6206 * 1913 5192 * 6126 * 4976 6619 6470 * 2885 5222 5181 * 2161 2618 4329 * * 9 20 6217 * 1000 1000 * * 6378 1000 0 K 10 3583 * 5271 5290 * 6778 * * 1601 6162 * 4100 2627 4804 3828 4170 3579 4422 * * 10 17 6438 * 0 * * * 6379 1000 0 T 11 4642 * 2513 4341 6785 5494 6480 6245 4366 * 5263 2650 4484 4777 4941 3431 2061 * * * 11 0 * * * * * * 6401 0 0 T 12 5322 * 4650 3673 * 3539 5213 6498 4173 5707 * 3179 5061 3636 * 2333 2299 5276 6672 * 12 0 * * * * * * 6416 0 0 A 13 1948 * * * 6187 6013 6369 1697 4820 4436 5064 4719 5023 5167 * 4504 5685 3254 * 6071 13 11 6999 * 0 * * * 6483 1000 0 V 14 3710 * 6268 4444 6682 6266 6384 2532 3447 3350 6459 * 4478 5842 6878 6575 4043 1837 * 4880 14 32 5506 * 0 * * * 6516 1659 0 A 15 470 * * * 6307 4892 * 6482 * 6160 * 5855 5364 6326 * 3801 5388 4140 * * 15 45 * 5028 * * * * 6496 0 0 N 16 5637 * 1099 * * 4205 * 6544 6338 * * 1739 * 6227 6450 4688 4855 4722 * * 16 35 * 5382 * * * 0 6430 0 2154 G 17 4867 * 5456 * * 543 * * 5574 * * 2444 * 6238 * 6128 6931 5976 * * 17 15 * 6630 * * 350 2215 6382 0 3056 Q 18 6065 * 6177 5691 * 2990 4859 5206 2533 5295 * 4219 * 3792 5284 2847 2875 2843 * * 18 18 6371 * 3459 138 0 * 6432 1000 1726 D 19 3402 * 1377 2640 6263 5590 * * * 6416 * 5076 6368 4325 6360 3560 2989 * * * 19 37 6365 6214 0 * * * 6451 1000 0 A 20 3238 * 6242 4167 4475 4324 6479 * 2703 4414 5526 4281 4425 4381 6731 3069 2569 4977 6600 6408 20 20 * 6216 * * * 0 6427 0 1000 I 21 2153 * 4667 * 5628 * 5777 2827 * * * 2896 5757 * 7193 3574 3524 2585 * 4081 21 0 * * * * 0 * 6412 0 1615 T 22 5359 6224 6302 5177 5629 * 7165 3618 4640 4306 6297 6502 * 5728 5207 3564 1054 3527 * * 22 0 * * * * * * 6469 0 0 Y 23 4163 * * * 3732 6341 * 2640 * 1249 * * * * * * * 2774 6459 3086 23 26 6939 6666 1000 1000 * * 6469 1000 0 T 24 4575 * 5690 4010 5403 * * 5868 3476 5809 * * * 4178 5116 4202 931 4652 * 5306 24 0 * * * * 0 * 6467 0 1000 V 25 999 * * * 4643 * * 3364 * 3367 * * * * * 6418 6495 2181 * 5478 25 19 * 6280 * * * * 6467 0 0 K 26 * * 5387 6395 6728 * 5216 4056 3164 4202 5632 5612 * 3924 5083 6884 1003 4631 * 5784 26 16 6501 * 0 * 0 * 6449 1000 1000 V 27 3389 * * * * * * 3074 * 1872 * * * * * * * 1027 5516 * 27 30 5602 * 527 1709 * * 6467 1656 0 M 28 4430 * 6280 4153 * * 5144 5013 2130 5360 5245 6234 * 3536 3765 5405 1998 3335 * * 28 67 4462 * 0 * * * 6467 2536 0 K 29 4867 6280 185 * * * 6641 * 5984 * * 5038 * * * 5865 * * * * 29 589 1578 * 30 5584 * * 6467 5567 0 G 30 2250 * 3415 6832 * 4044 4803 5195 4024 * * 2046 5632 3976 6741 3009 5547 5559 * * 30 792 1244 * 0 * * * 6467 5824 0 D 31 5579 * 3227 6260 * 766 5204 * 5487 * * 2661 * 4556 * 6676 6451 * * * 31 24 5909 * 1037 964 * * 6467 1609 0 K 32 4186 * 6026 * 6418 5514 3523 * 3373 7064 * 778 * 3716 6228 * 4947 * * * 32 71 4629 7025 339 2254 * * 6467 2514 0 P 33 3485 * 5529 * * 5255 * 4164 6329 4162 * 6619 653 6850 5603 5364 * 4670 * * 33 0 * * * * * 0 6471 0 1000 V 34 5495 * * * 6329 * * 2215 5960 1730 5783 * 6446 * * * * 1312 * * 34 59 4638 * 292 2449 * 0 6471 2413 1000 S 35 2074 * 6799 3435 * * * 5355 3216 6413 6568 5788 2605 5193 6497 2774 3279 4771 * * 35 32 5530 * 1000 1000 * 0 6471 1657 1000 N 36 5204 * 2404 6599 * 923 6630 * * * * 2248 * * * 5276 * * * * 36 0 * * * * 0 * 6471 0 1000 Q 37 2748 * * 4055 * 6964 6557 3287 4083 3527 6495 * * 2251 4566 6298 3885 2847 * 4593 37 31 5558 * 1000 1000 * * 6467 1650 0 E 38 4360 * 3509 3514 * 6393 5994 4544 3634 6424 * 3832 2778 3983 4656 4127 2195 5729 * * 38 50 4884 * 1251 786 * * 6467 2339 0 V 39 * * * * * * * 2511 * 4190 6640 * * 5790 * 6260 * 457 * * 39 16 6519 * 1000 1000 * * 6467 1000 0 T 40 3245 * 4027 3514 * 6946 5863 4583 4987 4126 5710 3157 * 5266 4549 3203 2333 4387 * 4832 40 48 4947 * 2062 395 * * 6467 2234 0 F 41 * * * 5790 1641 5725 * 3479 * 2682 6580 * * * * * * 4727 1569 6418 41 39 5215 * 1591 582 * * 6467 2230 0 T 42 3552 * 3822 4311 6478 5157 5281 3795 4283 5743 6744 4657 * 3946 5122 2144 2631 4151 * * 42 80 4447 6955 1854 467 * * 6467 2652 0 T 43 2801 5331 5368 5331 * 5573 6716 4235 6422 3629 6739 5760 6284 * 6234 2327 2426 2653 * 6922 43 57 4697 * 1198 826 0 * 6465 2557 1000 T 44 5126 * 2574 4500 * 4844 * 5790 6478 5396 * 2382 3899 5994 6240 2545 2461 5033 * * 44 89 4067 * 1353 717 * * 6467 3152 0 L 45 4457 * 4699 5407 * 2111 5094 4630 4556 3806 7050 2385 4035 4554 5257 3601 3921 * * * 45 127 3901 5831 1515 621 * * 6467 3288 0 G 46 3974 * 4710 * 5539 1364 5526 5820 4115 6371 * 2949 4144 5450 * 3789 4970 3930 * * 46 130 3532 * 1338 726 * 0 6450 3786 1687 K 47 3285 * 5419 5771 * 4748 5290 5906 3025 7064 6744 4929 5456 3453 4862 3246 1974 3389 * * 47 161 3432 6306 1571 592 975 1026 6450 3794 1687 L 48 5165 * 5818 4821 3150 3899 * 3438 5075 1581 5696 * * * * 4383 3162 3262 * * 48 62 4580 * 1112 896 1000 1000 6458 2884 1335 S 49 4341 * 4621 3836 * 4924 5784 3321 3287 5267 * 4551 5953 6335 * 2415 2410 3329 6149 * 49 52 4807 * 1224 807 * 0 6460 2535 1000 N 50 3012 * 5260 4576 3597 5611 4716 4606 4171 4800 6661 3297 3253 4578 6302 4084 2967 4175 * 5569 50 24 * 5927 * * 0 * 6460 0 1000 S 51 2338 * 4793 5543 5546 5258 * 5004 5699 3886 * 3903 2431 4653 * 2893 3634 4218 * 5782 51 88 4074 * 1059 943 848 1170 6463 2945 1568 T 52 4972 * 5558 3747 5655 4117 * * 4805 4205 7079 4968 4065 4105 5652 2174 1867 4960 * * 52 116 3885 6684 2383 307 * 0 6458 3126 1000 E 53 2800 * 5202 4655 * 2715 6274 3938 * * 6354 * 4807 5587 6473 2573 2870 2521 * * 53 15 * 6594 * * 871 1141 6451 0 1597 K 54 5855 * 5803 6492 5452 * 6539 3958 3070 6877 5059 3739 6710 5558 4262 4821 1583 2623 * 6808 54 26 5804 * 1494 633 * 0 6455 1697 1681 T 55 6270 * 6443 5362 * * * * * * * 6436 * 4666 * 3936 283 6238 * * 55 49 5347 6780 2539 272 0 * 6421 1813 1681 D 56 5273 * 1035 4695 * 4253 * 5388 * * * 1767 6402 6742 * 6397 4501 * * * 56 11 7027 * 3170 170 * 0 6426 1000 1000 T 57 2045 * 4581 2834 * 3991 7240 * 3429 4917 * 3598 5770 3962 * 2712 4216 6847 * * 57 64 4531 * 1458 653 0 * 6426 2540 1000 N 58 4249 * 2183 5000 * * 4525 * 3995 5044 6534 1960 4918 3339 5490 3624 6740 * * 4409 58 0 * * * * * * 6432 0 0 G 59 * * 6594 * * 15 * * * * * * * * * * * * * * 59 0 * * * * * * 6432 0 0 Y 60 5372 * 6890 3084 * * 6687 2966 3532 5870 6484 4873 * 3289 3516 4047 3623 2300 * 5135 60 0 * * * * * * 6432 0 0 A 61 950 6325 6795 * 5100 6534 * 6746 * 5059 * * * 6598 * 4241 5177 3407 * 2347 61 0 * * * * * * 6432 0 0 K 62 5485 * * 3118 7005 6262 4954 4383 4390 5464 * 5867 6291 4033 5660 3223 1327 4227 * 5565 62 0 * * * * * * 6432 0 0 V 63 1935 * * * 4741 6407 * 2777 * 3981 5928 4908 * 5369 * 4633 4298 1777 * 5426 63 0 * * * * * * 6432 0 0 T 64 * 6218 4843 2785 * 6691 5674 5680 3228 5704 6795 3313 * 3791 6930 3317 1650 5456 * * 64 0 * * * * * * 6432 0 0 L 65 5466 * * * 2931 6456 * 3050 * 1120 5501 * * * * * * 2414 * 4497 65 13 6852 * 0 * * * 6432 1000 0 T 66 5115 * * 6218 * * 6587 5060 3600 5545 * 5697 5779 5778 3550 2466 1318 3745 * 5997 66 59 4647 * 0 * * * 6432 2475 0 S 67 3604 * 4516 6510 * 2142 * * * 5814 * 4457 * * 4260 1095 4243 * * * 67 0 * * * * * * 6432 0 0 T 68 5052 * 5679 * * 6675 6064 4967 4798 4731 * 3101 6291 4517 4232 3429 1111 6235 * 5337 68 27 5758 * 666 1436 * * 6432 1576 0 T 69 2999 * 6675 6721 5957 6630 4804 4648 2137 5016 6553 7147 6291 2724 4512 3909 3316 3470 * 6300 69 12 6915 * 2322 322 * * 6432 1000 0 P 70 1343 * 6534 * 6262 5331 * 5150 4717 6552 5297 * 2732 5085 * 2900 4147 3563 * * 70 58 4677 * 570 1615 * * 6432 2533 0 G 71 * * 5729 3351 * 352 * * * 5622 * * * 5185 6470 6772 6434 5666 * * 71 23 5991 * 1000 1000 * * 6467 1079 0 K 72 4177 * 3817 3885 * 6400 6221 4147 4035 4956 7061 3890 5765 3201 5437 2893 2343 3750 * * 72 15 6603 * 0 * * * 6467 1000 0 S 73 2628 * 5572 * 4624 5187 4992 4488 4443 4676 * 5396 * 5794 * 4239 3151 1966 * 3002 73 34 5416 * 2519 277 * * 6467 1662 0 L 74 5502 * 4138 4616 * * * 6119 4764 4464 5362 4196 6923 3326 4033 3322 1503 3588 * * 74 0 * * * * * * 6467 0 0 V 75 5572 6522 * * 4145 * * 2018 * 3452 5957 * * * * * * 844 * * 75 13 * 6800 * * * * 6467 0 0 S 76 5098 * 6277 5050 * 4671 * 6366 3625 * 5454 5308 * 5246 4687 2605 983 6424 * * 76 0 * * * * * 0 6458 0 1000 A 77 507 * * * 6623 6284 * 5636 * 5573 * * 3979 * * * * 2567 * * 77 14 6654 * 1585 585 * 0 6458 1000 1000 R 78 5279 * 6517 4466 * 6830 * 4938 4046 5638 5353 4646 * 2836 3434 2389 1870 5360 * 6624 78 0 * * * * * 0 6438 0 1000 V 79 4151 * * * 5324 * * 2719 * 2145 * * 6513 * 6205 5189 3882 1390 * 4667 79 56 6173 5387 1585 585 * 0 6343 1000 1000 S 80 2308 * 3473 5595 * 3177 * * 4977 6193 5983 1752 4678 6338 * 3240 5219 4856 * * 80 36 * 5328 * * 0 * 6378 0 2219 D 81 3753 * 3177 6179 * 1363 * * 5790 * * 2167 * 6522 6469 2973 6396 6573 * * 81 55 * 4736 * * 953 1048 6334 0 1520 V 82 * * 3760 5079 * 4059 4663 3903 4464 5426 * 2603 * 4344 5704 2853 2660 2919 * * 82 0 * * * * 428 1960 6298 0 2591 A 83 2489 * 4799 4257 * 3493 * 4770 * * * 4052 5164 3414 5834 1991 3036 4827 * * 83 28 * 5702 * * 0 * 6140 0 1000 V 84 * * 4672 6078 5418 3744 5144 3228 4107 2954 4991 4706 6178 4811 4719 3403 2400 3561 * * 84 96 * 3965 * * * 0 6155 0 1000 D 85 4138 * 2476 5645 * 4904 * * 3768 5495 5455 3862 2905 3846 * 2175 4321 4365 * * 85 33 * 5461 * * 409 2017 5949 0 2580 V 86 5594 * 5507 4553 5326 4005 * 2952 * 5482 5596 5411 4478 * * 3550 4492 1287 * 4407 86 80 5060 5385 1585 585 0 * 6041 1000 1678 K 87 3466 * * 3620 * 5490 * 5473 2128 5554 * 3951 5384 4039 5178 2437 3327 5328 * 4408 87 0 * * * * * 0 5924 0 1000 A 88 1269 * 5413 * * 5306 4423 * * * * 4761 3983 3377 * 2255 4156 5168 * * 88 0 * * * * * 0 5924 0 1000 P 89 4245 * 3213 3604 5219 4609 5016 5136 3081 * * 5254 2572 3441 5099 4024 3216 5207 * * 89 0 * * * * 0 * 5929 0 1000 E 90 4278 * 3510 2565 5226 5140 4062 * 4163 * * 4956 4993 3232 5262 3247 2188 * * * 90 0 * * * * * * 5799 0 0 V 91 * * * * * * * 2310 5108 5195 * 5180 * * * 4930 3906 701 * * 91 0 * * * * * * 5770 0 0 E 92 3893 * * 2953 * * 4987 4640 * * * 3242 * 4672 * 3355 1484 2924 * * 92 0 * * * * * * 5582 0 0 F 93 * * * * 243 * * * * 4792 * * * * * 3686 4602 * * * 93 0 * * * * * * 5348 0 0 F 94 * * * * 963 * * 3406 * 2440 * * * * * * * * * 2262 94 0 * * * * * * 4051 0 0 T 95 * * * * * * * * * * * * * * * 2344 316 * * * 95 0 * * 0 * * * 2785 0 0 //