HHsearch 1.5 NAME d1ep5a_ FAM FILE d1ep5a_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ep5a_.a3m DATE Thu Mar 11 17:20:27 2010 LENG 156 match states, 156 columns in multiple alignment FILT 7 out of 11 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.9 EVD 0.3848 -1.5752 SEQ >ss_dssp CCCSCCCEEEEEETTEEEEEEEEETTEEEEETTCCSEESSHHHHTCCCEEEGGGTEEEEECCHHHHTTCBCBCCCCCSEEEEETTEEEEEETTEEEEETT CCCTTCTTCEEECTTSCEEEEEEEEEECSSEEEEEEEEECTTCCEEEECCTTCBCC >sa_dssp EEEEDEBDBCACDDEEDCACAAABCBDBBBACCAECEBECEDADECDCEECEDDBBCDBEBCEECDECCBCDBDDCEEDEBDBEDDEACBDEDCABADEE CCDEBBAABBACBEEDCAAAAAAAACDDDECBAABAABBDEECDCDDCDBEECEEB >ss_pred CCCCCCCEEEEEECCCEEEEEEEECCEECCEEEEEEEECCHHHHHEEEEECCEEECCHHHCCHHHHHHHHCCCCCCCCEEECCCEEEEEEECCEEEEECC CCCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEECCCCCCCC >ss_conf 9534552364442573111599974644010022344358434210220000010106540213201210142018653531300016970523776213 47888788721417983999997278877740689998858731788440145149 >Consensus xkxexdxxFxvxxeGxixGyAxxvgxkvxkPxHVkGxidxpxLaxlkfxkssxyDlExAxxPxxMrsdaxxytxexpegxYnwhhGavQxxxgrftipxg xgxxGDSGRPixDNsGrVVaIVLGGanegxrTaLSVvxwnkkxxtxkxtxexxxeW >d1ep5a_ MKLESDKTFPIMLEGKINGYACVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADVPQNMRADTFKYTHEKPQGYYSWHHGAVQYENGRFTVPKG VGAKGDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW >UniRef50_Q80S27(117-271:1258) E1 envelope glycoprotein n=564 Tax=Alphavirus RepID=POLS_MIDDV E=5e-55 s/c=1.38 id=63% cov=100% MKIENDCIFEVKLEGKVTGYACLVGDKVMKPAHVKGVIDNPDLAKLAFKKSSKYDLECAQIPVHMKSDASQFTHEKPEGHYNWHHGAVQYLNGRFTIPTG AGKPGDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWNKDMVT-RITPEGTEEW >UniRef50_P03316(108-264:1245) E1 envelope glycoprotein n=116 Tax=WEEV complex RepID=POLS_SINDV E=3e-75 s/c=1.80 id=59% cov=101% LKLEADRLFDVKNEdGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPR GVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW >UniRef50_Q86925(111-267:1244) E1 envelope glycoprotein n=959 Tax=Alphavirus RepID=POLS_AURAV E=8e-73 s/c=1.75 id=57% cov=101% LKFEADRTFVGKNEdGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEVFYNWHHGAVQFSGGRFTIPT GVGGPGDSGRPILDNSGKVVAIVLGGANEVPGTALSVVTWNKKGAAIKTTHEDTVEW >UniRef50_Q8QL52(135-283:1322) E1 envelope glycoprotein n=104 Tax=Alphavirus RepID=POLS_SLDV E=2e-55 s/c=1.45 id=38% cov=96% -------TFPVYHDGAISGYAVLIGSRVFKPAHVKGKFDHPELADIKFQVAEVMDLEAAAYPKCMR-DQAAEPATMMDGVYNGEYGNIQeWRTILYSMRA AEASRGDSGRPFTDNSGKVVGIVLGGGPDGRRTRLSVIGFDKKLKAREIAYSEAIPW >UniRef50_Q993S2(1-36:661) Structural polyprotein (Fragment) n=1 Tax=Seal louse virus RepID=Q993S2_9VIRU E=1e-08 s/c=1.70 id=68% cov=24% ---------------------------------------------------------------------------------------------------- -------------------AIVLGGANEGERTALSVVTWNKNTV-VKVTPEETVEW >UniRef50_Q80S25(116-270:1241) Structural polyprotein n=153 Tax=Alphavirus RepID=Q80S25_9VIRU E=8e-74 s/c=1.79 id=64% cov=100% MKIESDCIFEVKLDGEVTGYACLVGDKVMKPAHVKGVIQNDELAKLSFKKSSKYDLECAQIPVKMRSDASKYTHEKPEGHYNWHHGAVQYTNGRFTIPTG AGKPGDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWNKDMVT-RVTPEGSVEW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 1296 755 * * * * * * * * * 1 0 * * * * * * 1542 0 0 K 2 * * * * * * * * 0 * * * * * * * * * * * 2 0 * * * * * * 1542 0 0 L 3 * * * * 2258 * * 1473 * 1215 * * * * * * * * * * 3 0 * * * * * * 1542 0 0 E 4 * * * 0 * * * * * * * * * * * * * * * * 4 0 * * * * * * 1542 0 0 S 5 1296 * * * * * * * * * * 2489 * * * 1271 * * * * 5 0 * * * * * * 1542 0 0 D 6 * * 0 * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1542 0 0 K 7 * 1473 * * * * * * 2106 * * * * * 1296 * * * * * 7 0 * * * * * * 1542 0 0 T 8 * * * * * * * 1922 * 2754 * * * * * * 766 * * * 8 0 * * * * * * 1889 0 0 F 9 * * * * 0 * * * * * * * * * * * * * * * 9 0 * * * * * * 1889 0 0 P 10 * * 2754 1922 * * * * * * * * 1205 * * * * 2697 * * 10 0 * * * * * * 1889 0 0 I 11 * * * * * 2697 * 2520 * * * * * * * * * 575 * * 11 0 * * * * * * 1889 0 0 M 12 * * * * * * * * 820 * 2520 * * * * * * * * 1947 12 0 * * * * * * 1889 0 0 L 13 * * * * * * 1947 * * 1190 * 1725 * * * * * * * * 13 0 * * * * * * 1889 0 0 E 14 * * 1347 721 * * * * * * * * * * * * * * * * 14 520 1725 * 0 * * * 1889 1173 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1889 0 0 K 16 1947 * 2754 2902 * * * * 1125 * * * * * * * * * * * 16 0 * * * * * * 1889 0 0 I 17 * * * * * * * 766 * * * * * * * * * 1279 * * 17 0 * * * * * * 1889 0 0 N 18 * * * * * * * 2754 * * 2697 2520 * * * 1947 1922 * * * 18 0 * * * * * * 1889 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 1889 0 0 Y 20 * * * * * * 2754 * * * * * * * * * * * * 231 20 0 * * * * * * 1889 0 0 A 21 0 * * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1889 0 0 C 22 * 1190 * * * * * * * 2754 * * * * * * * 1274 * * 22 0 * * * * * * 1889 0 0 V 23 1725 * * * * * * * * 935 * * * * * * * 2520 * * 23 0 * * * * * * 1889 0 0 V 24 * * * * * * * 1947 * * 1725 * * * * * * 1190 * * 24 0 * * * * * * 1889 0 0 G 25 * * * 1725 * 520 * * * * * * * * * * * * * * 25 0 * * * * * * 1889 0 0 G 26 * * 1922 * * 1069 * * * * * * * * * 1947 * * * * 26 0 * * * * * * 1889 0 0 K 27 * * * * * * * * 433 * * * * * 1947 * * * * * 27 0 * * * * * * 1889 0 0 L 28 * * * * * * * * * 2520 * * * * * * * 276 * * 28 0 * * * * * * 1889 0 0 F 29 * * * * 1205 * * 2697 * * 1279 * * * * * * * * * 29 0 * * * * * * 1889 0 0 R 30 * * * * * * * * 276 * * * * * 2520 * * * * * 30 0 * * * * * * 1889 0 0 P 31 * * * * * * * * * * * * 0 * * * * * * * 31 0 * * * * * * 1889 0 0 M 32 935 * * * * * * * * 1725 2520 * * * * * * * * * 32 0 * * * * * * 1889 0 0 H 33 * * * * * * 0 * * * * * * * * * * * * * 33 0 * * * * * * 1889 0 0 V 34 * * * * * * * * * * * * * * * * * 0 * * 34 0 * * * * * * 1889 0 0 E 35 * * * 2520 * * * * 276 * * * * * * * * * * * 35 0 * * * * * * 1889 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 1889 0 0 K 37 * * * * * * * * 1205 * * * * * * * 1725 1922 * * 37 0 * * * * * * 1889 0 0 I 38 * * * * 1947 * * 433 * * * * * * * * * * * * 38 0 * * * * * * 1889 0 0 D 39 * * 207 * * * * * * * * * * 2902 * * * * * * 39 0 * * * * * * 1889 0 0 N 40 * * * * * * 832 * * * * 1190 * * * * * * * * 40 0 * * * * * * 1889 0 0 D 41 * * 1698 * * * * * * * * * 531 * * * * * * * 41 0 * * * * * * 1889 0 0 V 42 2697 * 2943 1347 * * * * * * * * * * * * * 1632 * * 42 0 * * * * * * 1889 0 0 L 43 * * * * * * * * * 0 * * * * * * * * * * 43 0 * * * * * * 1889 0 0 A 44 231 * * * * * * * * * * * * * * 2754 * * * * 44 0 * * * * * * 1889 0 0 A 45 2520 * 1947 * * * * * 820 * * * * * * * * * * * 45 0 * * * * * * 1889 0 0 L 46 * * * * * * * 1947 * 433 * * * * * * * * * * 46 0 * * * * * * 1889 0 0 K 47 2943 * * * * * * * 442 * * * * * * 2902 * * * * 47 0 * * * * * * 1889 0 0 T 48 * * * * 276 * * * * * * * * * * * 2520 * * * 48 0 * * * * * * 1889 0 0 K 49 * * * * * * * * 1190 * * * * 1947 * * 1725 * * * 49 0 * * * * * * 1889 0 0 K 50 * * * * * * * * 433 * * * * * * * * 1947 * * 50 0 * * * * * * 1889 0 0 A 51 1205 * * * * * * * * * * * * * * 820 * * * * 51 0 * * * * * * 1889 0 0 S 52 * * * 1947 * * * * * * * * * * * 433 * * * * 52 0 * * * * * * 1889 0 0 K 53 2754 * * * * * * * 1190 * * * * * * 2697 * 1947 * * 53 0 * * * * * * 1889 0 0 Y 54 * * * * * * * * * * 1947 * * * * * * * * 433 54 0 * * * * * * 1889 0 0 D 55 * * 0 * * * * * * * * * * * * * * * * * 55 0 * * * * * * 1889 0 0 L 56 * * * * * * * * * 520 1725 * * * * * * * * * 56 0 * * * * * * 1889 0 0 E 57 * * * 0 * * * * * * * * * * * * * * * * 57 0 * * * * * * 1889 0 0 Y 58 1947 1922 * * 1725 * * * * * * * * * * * * * * 2520 58 0 * * * * * * 1889 0 0 A 59 0 * * * * * * * * * * * * * * * * * * * 59 0 * * * * * * 1889 0 0 D 60 1947 * 2520 * * * * * 2697 * * * * 1279 * * * * * * 60 0 * * * * * * 1889 0 0 V 61 * * * * * * * 1922 * 1725 * * * * * * * 2520 * 1947 61 0 * * * * * * 1889 0 0 P 62 * * * * * * * * * * * * 0 * * * * * * * 62 0 * * * * * * 1889 0 0 Q 63 * * * * * * * * 1947 * * * * 2520 * * 2697 1279 * * 63 0 * * * * * * 1889 0 0 N 64 * 1947 * 2697 * * 2943 * 2902 * * 1632 * * * * * * * * 64 0 * * * * * * 1889 0 0 M 65 * * * * * * * * * * 0 * * * * * * * * * 65 0 * * * * * * 1889 0 0 R 66 * * * * * * * * 1815 * * * * * 482 * * * * * 66 433 * 1947 * * * * 1889 0 0 A 67 2106 * * * * * * * * * * * * * * 381 * * * * 67 0 * * * * 0 * 1542 0 1000 D 68 * * 231 2754 * * * * * * * * * * * * * * * * 68 0 * * * * * * 1889 0 0 T 69 820 * * * * * * * * * * * * 1947 * * 2520 * * * 69 0 * * * * * * 1889 0 0 F 70 1947 * * * 1069 * * * * * * * * * * 1922 * * * * 70 0 * * * * * * 1889 0 0 K 71 1947 * * * * 2697 * * 1698 * * * * 2943 * * 2754 * * * 71 0 * * * * * * 1889 0 0 Y 72 * * * 1947 2943 * * * * * * * * * * * * * * 712 72 0 * * * * * * 1889 0 0 T 73 * * * * * * * * * * * * 1947 * * * 433 * * * 73 0 * * * * * * 1889 0 0 H 74 1947 * * * * * 1190 * * * * * * * * 2754 2697 * * * 74 0 * * * * * * 1889 0 0 E 75 * * * 433 * * * * * * * * * * * * 1947 * * * 75 0 * * * * * * 1889 0 0 K 76 * * * * * * 1725 * 1190 * 1947 * * * * * * * * * 76 0 * * * * * * 1889 0 0 P 77 * * * * * * * * * * 1947 * 433 * * * * * * * 77 0 * * * * * * 1889 0 0 Q 78 * * 1947 820 * * * * * * * * * 2520 * * * * * * 78 0 * * * * * * 1889 0 0 G 79 * * * * * 242 * * * * * * * * * * * 2697 * * 79 0 * * * * * * 1889 0 0 Y 80 * * * * 1725 * 1922 * * * * * * * * * * 1947 * 2520 80 0 * * * * * * 1889 0 0 Y 81 * * * * * * * * * * * * * * * * * * * 0 81 0 * * * * * * 1889 0 0 S 82 * * * * * * * * * * * 276 * * * 2520 * * * * 82 0 * * * * * * 1889 0 0 W 83 * * * * * 1947 * * * * * * * * * * * * 433 * 83 0 * * * * * * 1889 0 0 H 84 * * * 1947 * * 433 * * * * * * * * * * * * * 84 0 * * * * * * 1889 0 0 H 85 * * * * * * 433 * * * * * * * * * * * * 1947 85 0 * * * * * * 1889 0 0 G 86 * * * * * 0 * * * * * * * * * * * * * * 86 0 * * * * * * 1889 0 0 A 87 433 * * * * * * * * * * 1947 * * * * * * * * 87 0 * * * * * * 1889 0 0 V 88 * * * * * * * 1947 * * * * * * * * * 433 * * 88 0 * * * * * * 1889 0 0 Q 89 * * * * * * * * * * * * * 0 * * * * * * 89 433 1947 * 0 * * * 1889 1000 0 Y 90 * * * * 2697 * * * * * * * * * * * * * 1947 770 90 0 * * * * * * 1889 0 0 E 91 * * * 2520 * * * * * 2943 * * * * 1947 1725 2902 * * * 91 0 * * * * * * 1889 0 0 N 92 * * * * * 1725 * * * * * 1190 * * * * 1947 * * * 92 0 * * * * * * 1889 0 0 G 93 * * * * * 433 * 1947 * * * * * * * * * * * * 93 0 * * * * * * 1889 0 0 R 94 * * * * * * * * * 1947 * * * * 433 * * * * * 94 0 * * * * * * 1889 0 0 F 95 * * * * 433 * * * * * * * * * * * * * * 1947 95 0 * * * * * * 1889 0 0 T 96 * * * * * * * * * * * * * * * 1947 433 * * * 96 0 * * * * * * 1889 0 0 V 97 * * * * * * * 820 * * 1947 * * * * * * 2520 * * 97 0 * * * * * * 1889 0 0 P 98 * * * * * * * * * * * * 433 * 1947 * * * * * 98 0 * * * * * * 1889 0 0 K 99 1947 * * * * * * * 2520 * * * * * 2754 * 1258 * * * 99 0 * * * * * * 1889 0 0 G 100 1947 * * * * 433 * * * * * * * * * * * * * * 100 0 * * * * * * 1889 0 0 V 101 1922 * * 1947 * * * * * * * * * * * * * 1069 * * 101 0 * * * * * * 1889 0 0 G 102 1947 * * * * 433 * * * * * * * * * * * * * * 102 0 * * * * * * 1889 0 0 A 103 2520 * * * * 1725 * * 1922 * * * * * * 1947 * * * * 103 0 * * * * * * 1889 0 0 K 104 * * * * * * * * 2520 * * * 1258 * 1295 * * * * * 104 0 * * * * * * 1889 0 0 G 105 * * * * * 0 * * * * * * * * * * * * * * 105 0 * * * * * * 1889 0 0 D 106 * * 0 * * * * * * * * * * * * * * * * * 106 0 * * * * * * 1889 0 0 S 107 * * * * * * * * * * * * * * * 0 * * * * 107 0 * * * * * * 1889 0 0 G 108 * * * * * 0 * * * * * * * * * * * * * * 108 0 * * * * * * 1889 0 0 R 109 * * * * * * * * * * * * * * 0 * * * * * 109 0 * * * * * * 1889 0 0 P 110 * * * * * * * * * * * * 0 * * * * * * * 110 0 * * * * * * 1889 0 0 I 111 * * * * 1947 * * 433 * * * * * * * * * * * * 111 0 * * * * * * 1889 0 0 L 112 * * * * 1922 * * * * 1606 2754 * * * * * 1947 * * * 112 0 * * * * * * 1889 0 0 D 113 * * 0 * * * * * * * * * * * * * * * * * 113 0 * * * * * * 1889 0 0 N 114 * * * * * * * * * * * 0 * * * * * * * * 114 0 * * * * * * 1889 0 0 Q 115 * * * * * * * * 1922 * * * * 2520 * 832 * * * * 115 0 * * * * * * 1889 0 0 G 116 * * * * * 0 * * * * * * * * * * * * * * 116 0 * * * * * * 1889 0 0 R 117 * * * * * * * * 1274 * * * * * 770 * * * * * 117 0 * * * * * * 1889 0 0 V 118 * * * * * * * * * * * * * * * * * 0 * * 118 0 * * * * * * 1889 0 0 V 119 * * * * * * * * * * * * * * * * * 0 * * 119 0 * * * * * * 1889 0 0 A 120 441 * * * * 1925 * * * * * * * * * * * * * * 120 0 * * * * * * 1888 0 0 I 121 * * * * * * * 0 * * * * * * * * * * * * 121 0 * * * * * * 1888 0 0 V 122 * * * * * * * * * * * * * * * * * 0 * * 122 0 * * * * * * 1888 0 0 L 123 * * * * * * * * * 0 * * * * * * * * * * 123 0 * * * * * * 1888 0 0 G 124 * * * * * 0 * * * * * * * * * * * * * * 124 0 * * * * * * 1888 0 0 G 125 * * * * * 0 * * * * * * * * * * * * * * 125 0 * * * * * * 1888 0 0 V 126 758 * * * * 1925 * * * * * * * * * * * 2781 * * 126 0 * * * * * * 1888 0 0 N 127 * * 3055 * * * * * * * * 698 1925 * * * * * * * 127 0 * * * * * * 1888 0 0 E 128 * * 1925 441 * * * * * * * * * * * * * * * * 128 0 * * * * * * 1888 0 0 G 129 * * * * * 231 * * * * * * * * * * * 2756 * * 129 0 * * * * * * 1888 0 0 S 130 2251 * * 3150 * * * * * * * * 2756 * 1925 2781 3055 * * * 130 0 * * * * * * 1888 0 0 R 131 * * * * * 2756 * * * * * * * * 231 * * * * * 131 0 * * * * * * 1888 0 0 T 132 * * * * * * * * * * * * * * * * 0 * * * 132 0 * * * * * * 1888 0 0 A 133 441 * * * * * * * * * * * * * 1925 * * * * * 133 0 * * * * * * 1888 0 0 L 134 * * * * * * * * * 0 * * * * * * * * * * 134 0 * * * * * * 1888 0 0 S 135 * * * * * * * * * * * * * * * 0 * * * * 135 0 * * * * * * 1888 0 0 V 136 * * * * * * * * * * * * * * * * * 0 * * 136 0 * * * * * * 1888 0 0 V 137 * * * * * * * 1925 * * * * * * * * * 441 * * 137 0 * * * * * * 1888 0 0 M 138 * * * * * 1925 * * * * 2781 * * * * * 758 * * * 138 0 * * * * * * 1888 0 0 W 139 * * * * 1925 * * * * * * * * * * * * * 441 * 139 0 * * * * * * 1888 0 0 N 140 * * 1925 * * * * * * * * 441 * * * * * * * * 140 0 * * * * * * 1888 0 0 E 141 * * * 2781 * * * * 446 * * * * * * 3055 * * * * 141 0 * * * * * * 1888 0 0 K 142 * * 2251 * * * * * 562 * * 3150 * * * * * * * * 142 0 * * * * * * 1888 0 0 G 143 * * * * * 1273 * * * 1925 2251 * * * * * 3150 * * * 143 0 * * * * * * 1888 0 0 V 144 2756 * * * * * * * 1382 * * * * * * * * 1095 * * 144 172 * 3150 * * * * 1888 0 0 T 145 1274 * * * * * * * * * * * * * * * 770 * * * 145 442 * 1922 * * 0 * 1889 0 1000 V 146 * * * * * * * 1508 * * * * * * 1753 * * 1508 * * 146 0 * * * * 0 * 1859 0 1069 K 147 * * * 1925 * * * * 926 * * * * * 2251 * * * * * 147 0 * * * * * * 1888 0 0 Y 148 * * * * * * * 1450 * * * * * * * * 1898 2183 * 2781 148 0 * * * * * * 1888 0 0 T 149 1925 * * * * * * * * * * * * * * * 441 * * * 149 0 * * * * * * 1888 0 0 P 150 * * * * * * 2756 * * * * * 765 * * * * * * 1925 150 0 * * * * * * 1888 0 0 E 151 * * * 441 * * * * * * * * * * * 1925 * * * * 151 0 * * * * * * 1888 0 0 N 152 * * 2756 1411 * 1597 * * * * * 2781 * * * * * * * * 152 0 * * * * * * 1888 0 0 C 153 1925 2781 * * * * * * * * * * * * * 3216 1048 * * * 153 0 * * * * * * 1888 0 0 E 154 * * * 1441 * * * 1925 * * * * * * * * * 1441 * * 154 0 * * * * * * 1888 0 0 Q 155 * * * 758 * * * * * * * * 1925 2781 * * * * * * 155 0 * * * * * * 1888 0 0 W 156 * * * * * * * * * * * * * * * * * * 0 * 156 0 * * 0 * * * 1888 0 0 //