HHsearch 1.5 NAME d1ekza_ FAM FILE d1ekza_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ekza_.a3m DATE Tue Mar 9 21:55:50 2010 LENG 76 match states, 76 columns in multiple alignment FILT 117 out of 996 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.5 EVD 0.4981 2.6680 SEQ >ss_dssp CCCCCCSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETTEEEEECCCSTTSSSHHHHHHHHHHHTTC >sa_dssp EEEEDEDDBCDDACDDBEEDEBEBDCECEEEBDEEEEDBCCBBAEBDEDEBDBEAEDEDDBDCDAACDABECAEEE >ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC >ss_conf 9877789767999999998379998032232179866447999998122147775578999999999999998549 >Consensus xxxxxxknpvsxLxExxqkxxxxxxxxxxxxxGxxhxxxfxxxxxxxxxxxxgxgxsKKxAkxxAAxxaLxxLxxl >d1ekza_ MDEGDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKL >UniRef50_UPI0001792EAC(78-137:574) PREDICTED: similar to staufen, RNA binding protein, homolog 2 n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792EAC E=3e-10 s/c=1.10 id=21% cov=80% ---DKDKTPMCLVNELARFNKIKHQYKLTNEQGPPHKKKFTVTLQLGNEEYNADAMSIKKAQH------------- >UniRef50_Q16IC6(138-187:289) RNA binding protein, putative n=1 Tax=Aedes aegypti RepID=Q16IC6_AEDAE E=3e-06 s/c=1.06 id=20% cov=67% -----KKTPITVLQEVLTRRGIYPQYDFIQPDAAVHDGTFRYRVSYQDKEAMGTG--------------------- >UniRef50_Q6BX76(338-406:540) DEHA2B05302p n=2 Tax=Debaryomyces hansenii RepID=Q6BX76_DEBHA E=7e-05 s/c=0.70 id=20% cov=91% --EEINKDAKSELYSLIGTAAFHPQYEVVK-TGDGSSNPFVIRCTMGdDVLGVGTAPSNKDAGLRAAMEALK----- >UniRef50_UPI0000F2B7DB(84-151:507) PREDICTED: hypothetical protein n=1 Tax=Monodelphis domestica RepID=UPI0000F2B7DB E=0.0001 s/c=0.70 id=22% cov=84% -----PGQALSLLTRYAMGTGLTLRFVESEVQVP--FRHFSVCAMLDEMScPEGTGSSKKEAKGQAAILAL------ >UniRef50_A7NAR0(146-223:230) Ribonuclease 3 n=18 Tax=Francisella RepID=RNC_FRATF E=2e-05 s/c=0.64 id=20% cov=100% LDTIKVKDSKSKLQEILLQNALSLPEYSIETiDGKDHEQQFTVVAVSKDLNLRVkaQGTSRKKAEQKTAEKMIEMLSQ- >UniRef50_C1EAE4(220-294:352) Ribonuclease III/double strand RNA binding domain-containing protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EAE4_9CHLO E=3e-05 s/c=0.67 id=21% cov=95% --AADVHNYKGALYELIAKgvDGYVVTKDKMGEaSGGAHPQRFETEVELDGVRARFLARNKREAERGAAKRVLEKL--- >UniRef50_A7RMK5(802-878:880) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RMK5_NEMVE E=0.0002 s/c=0.61 id=18% cov=101% VEGGPVISYKNQLQEYCDKNKKGAPIYDSKKVELQVDGKFVCDLLVDGFTFRAKgCQTKKGSEQSAARIALQRFGVL >UniRef50_P33863(114-182:190) Protein E3 n=49 Tax=root RepID=VE03_VARV E=5e-05 s/c=0.71 id=16% cov=92% ----KNANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3237 * 1922 1174 * * * * * * 2421 * * 1 0 * * * * * * 5207 0 0 D 2 3820 * 1017 2382 3939 * * * 4614 * * * * 4420 4758 4225 * * * * 2 0 * * * * * * 5724 0 0 E 3 2853 * 3736 1634 4564 4858 5625 * * 4836 5051 2776 5057 4997 * 4672 4168 * * * 3 0 * * * * * * 6175 0 0 G 4 2794 * 2595 3848 * 1998 * 3536 * 5330 * 4155 3960 5244 * 4157 4750 5676 * * 4 0 * * * * * * 6303 0 0 D 5 * 5184 2208 3197 * 5396 * 2831 2795 4803 * 4022 3182 * 5338 4184 * 4284 * * 5 38 * 5261 * * * * 6353 0 0 K 6 5422 * 5722 3641 * 3682 * 5194 3575 3059 * 2170 3058 * * 4625 4616 2787 * * 6 0 * * * * * 0 6553 0 1000 K 7 4327 * 6130 5852 * 3766 5830 4753 760 5946 5663 6098 6663 5645 4195 5905 * 5013 * 5867 7 21 * 6111 * * 0 * 6974 0 1000 S 8 * * 3038 6167 * * 4696 * 6137 * 6188 1096 * 5097 * 2359 3439 6195 * * 8 11 7041 * 2000 415 * 0 7383 1000 1000 P 9 2438 * * 4444 * * 6738 * 5812 * * * 823 * * 4080 * 6118 * 3273 9 0 * * * * * 0 7507 0 1000 I 10 6674 * * 6163 * * * 1870 1423 6255 4950 * * * * * * 1815 * * 10 0 * * * * 0 * 7782 0 1000 S 11 5086 3767 * 6193 6553 3020 * * 6803 * 6277 3135 * 4800 4994 1259 3183 5743 * * 11 0 * * * * * * 7792 0 0 Q 12 3103 6748 * 4088 6010 5202 7267 3584 4049 2317 5069 * * 2983 3830 5682 4106 3248 6322 * 12 0 * * * * * * 7800 0 0 V 13 * * * * 5756 * * 3855 * 279 * * * * * * * 3499 * * 13 12 * 6907 * * * * 7799 0 0 H 14 6198 * * 5256 5111 6817 3019 3886 6601 5255 5070 2015 * 1829 4985 * 4688 * * 3925 14 0 * * * * 0 * 7791 0 1000 E 15 5264 * 4274 609 * * * * 4893 6315 6578 5089 6927 3643 6315 3979 5922 * * * 15 16 * 6482 * * * * 7799 0 0 I 16 5768 6769 * * 3230 * 4763 2644 6621 2196 5418 * * * 6455 5666 4905 6020 3361 2058 16 0 * * * * * 0 7764 0 1000 G 17 1770 1613 * * 6324 4578 * 4458 * 3368 4654 * * 5968 * 4343 4957 4443 * * 17 47 6586 5508 0 * * 0 7762 1000 1000 I 18 3113 * 6661 6232 6764 5195 4935 6760 4988 4330 5568 6693 * 930 3851 4232 5426 * * * 18 10 7181 * 0 * 1503 628 7725 1000 2164 K 19 4097 * * * 4584 6315 4644 6550 1468 4795 4180 7031 6630 4057 2647 3498 4301 * * 7109 19 42 5115 * 430 1955 * 0 7758 2373 1652 R 20 4003 6662 6553 4405 * 6392 3826 * 3251 4270 6175 2512 * 3691 2349 5960 3790 5090 * 4319 20 43 5082 * 0 * 932 1072 7758 1930 1652 N 21 5085 * * 5326 6549 2023 3479 * 1914 5387 * 4272 6579 4630 3153 4289 6749 6396 * 5466 21 10 7120 * 1000 1000 * 0 7773 1000 1000 M 22 5867 * 5826 5542 4532 * 6301 3678 3759 1754 4744 5760 5625 3956 4471 5163 6108 4260 3295 4126 22 51 4836 * 649 1464 * 0 7773 3099 1000 T 23 4595 * 5154 4227 * 4092 4460 5574 3784 3887 6911 5059 2522 3768 6144 3053 3017 4722 * 5063 23 166 3202 * 463 1866 0 * 7779 4474 1000 V 24 3917 5768 * 4955 5164 * 5983 3542 * 2453 * 6215 1501 6306 5766 6328 * 2819 6568 6888 24 30 6609 6603 0 * * * 7802 1000 0 H 25 6211 * 4613 2778 * 6310 5198 4713 4715 4471 * 4316 2132 3152 4447 3596 3726 4518 * * 25 43 5078 * 1431 668 * 0 7787 2493 1000 F 26 5135 6449 6916 4994 1984 * 6996 3544 6659 6148 * * * 4903 6450 4784 4734 4550 6787 1397 26 12 * 6946 * * 0 * 7796 0 1000 K 27 * * 3401 2756 4550 7024 * 6200 2979 * * 4275 7318 3965 4269 4862 4291 3939 5376 2198 27 72 5549 5191 0 * 0 * 7813 2073 1000 V 28 5029 4441 4131 3606 4297 * 5730 3558 5207 2345 4628 4748 * 4910 * 3820 3522 3071 * 5810 28 15 6556 * 1000 1000 0 * 7786 1000 2356 L 29 6951 4933 * 4142 3745 * 6859 2754 7035 2748 5770 7219 6515 4943 7325 3765 2765 2583 6628 4563 29 56 5120 6733 1232 800 * * 7811 2143 0 R 30 5048 6540 3834 2205 5916 4011 5691 4486 3952 6658 6630 3851 5426 3185 3423 3893 4500 5293 * 6378 30 49 6829 5351 0 * * 0 7799 1000 1000 E 31 4751 6313 5633 1640 6906 6340 * 5601 3451 5449 4882 5706 5830 3220 3405 4545 5084 3931 6096 5117 31 68 4450 * 477 1828 968 1033 7791 3238 2810 E 32 5177 5910 4382 2396 * 3590 6376 4622 4967 * 6628 4176 5996 3777 4384 2377 3173 5213 * 5811 32 54 6594 5239 1000 1000 * 0 7797 1000 1788 G 33 5148 6781 5810 4452 * 592 * 6893 6914 6503 * 5154 4955 6615 6172 3448 6332 5664 * * 33 24 7265 6618 1000 1000 1215 813 7763 1000 2965 P 34 4344 * 3160 3663 6562 5265 4739 5972 6881 5514 5649 4514 1352 4710 5770 3587 5991 5625 * 6899 34 43 6975 5545 0 * * 0 7766 1000 2681 A 35 2761 7682 3219 4486 * 3281 4923 5511 4156 5555 6800 4487 2855 3974 * 2806 4744 5340 * * 35 59 6482 5097 0 * 1636 560 7743 1000 3493 H 36 6814 * * 7087 * 4385 916 4956 3479 6387 5050 3698 6520 5494 4137 4602 * 6677 5392 * 36 60 4972 6763 305 2391 825 1200 7739 2131 3851 M 37 3014 4691 3801 4123 5422 4682 6739 5646 3582 4705 5615 2796 4171 3341 4555 3386 * 5060 * 6960 37 41 5726 6780 994 1006 1853 468 7772 1778 2653 K 38 * 6265 6659 4725 4436 4981 5809 6367 2534 5160 5543 4638 1720 4827 3076 6712 4413 4176 * * 38 12 6907 * 0 * 1923 442 7774 1000 2714 N 39 5842 6843 5912 4020 2927 5557 6325 4607 3872 3302 4663 5079 6376 3879 4208 4289 3220 3069 6884 5036 39 0 * * * * 527 1708 7779 0 2223 F 40 * 4613 * 6375 684 6706 * 5251 5866 6600 * * * 6958 * 6466 5209 5128 3770 3143 40 41 6832 5686 0 * 0 * 7791 1000 1000 I 41 3979 4475 6580 4714 4540 6744 6144 4186 3157 5043 6028 5986 * 5138 4878 3632 2045 2698 * 6858 41 12 6932 * 1585 585 934 1069 7802 1000 1699 T 42 3707 2513 * 6763 4289 6597 * 3076 5544 6814 4259 * * 5977 * 4102 4277 1867 6557 3925 42 10 7208 * 0 * * 0 7804 1000 1000 A 43 3571 4328 5204 2632 5773 4933 * 4339 4415 * 5776 * * 3922 3686 3741 2824 2715 * * 43 9 7360 * 0 * * 0 7804 1000 1000 C 44 2789 2202 5820 6848 5448 * * 4054 6555 3248 6444 * * * 6763 * 6466 1431 * 6690 44 47 4957 * 0 * 0 * 7804 2505 1000 I 45 5735 5942 5737 4116 4732 * 5364 3201 3487 4178 4514 5987 * 7140 3196 3752 2982 2729 5707 5214 45 25 5837 * 2029 405 * * 7811 1727 0 V 46 4075 * 4766 4447 4322 3316 5747 2424 * 2610 5749 4382 * * 6459 5332 * 2258 * 5206 46 179 3099 * 1254 784 * * 7811 4855 0 G 47 5541 * 2760 4319 6887 1484 6657 * 4523 4644 6457 3007 6459 5007 5816 4620 4925 4866 6809 6859 47 68 4445 * 0 * * * 7811 2797 0 S 48 5653 * 2583 2545 * 2237 5554 4681 3252 5796 5986 4189 * 5003 4626 3923 5754 5673 * * 48 71 4386 * 705 1371 * * 7813 3486 0 I 49 6690 6728 5525 3191 4080 7601 4335 2883 3763 3770 4359 5677 6660 5331 4145 4640 4795 2711 5892 4379 49 96 3955 * 0 * * * 7813 3740 0 V 50 6755 6327 6402 4182 3336 7558 4935 3524 3426 3900 6969 5962 * 5015 4754 4352 2816 3221 7057 2947 50 56 4726 * 349 2217 * * 7813 2591 0 T 51 2775 6599 6568 3935 4299 2010 4977 5500 6829 5902 * * 3450 6972 5880 4365 3951 4911 6124 3157 51 40 5192 * 981 1019 * * 7813 2134 0 E 52 4453 * 5872 2757 6024 5377 6972 3720 4366 4559 5367 4701 5526 4000 3141 4484 2485 4168 * 4793 52 8 7558 * 0 * * * 7813 1000 0 G 53 2525 5120 5255 5353 6662 801 7101 5852 * * * 6851 5479 6315 6818 6916 5568 4147 * * 53 77 4264 * 1731 517 * * 7813 3253 0 E 54 4535 6990 4605 3150 4260 * 6222 4295 3296 4043 5758 5821 4541 4157 5252 3971 2562 4688 4955 4303 54 22 6069 * 418 1990 * * 7813 1698 0 G 55 2464 5115 4708 6644 * 672 5901 * 5804 * * 6640 6878 * * 4037 * * * * 55 58 5060 6718 648 1467 * * 7813 2189 0 N 56 4658 6962 7069 5261 6925 4893 6767 * 2353 5073 6120 3214 3070 5005 3314 2536 4061 5642 * 5869 56 12 6960 * 0 * 0 * 7791 1000 1000 G 57 * * * * * 5631 * * 4855 * * 2212 * 5563 * 1195 1880 * * * 57 12 6903 * 1000 1000 * * 7753 1000 0 K 58 6878 * * * * * * 4591 314 4790 6993 6698 * 6781 3976 6713 * * * 6640 58 0 * * * * * * 7753 0 0 K 59 5534 * 6632 6607 * * * 5813 505 * * 4988 * 3261 3481 * * 6621 * * 59 16 6530 * 1000 1000 * * 7753 1000 0 V 60 4146 * 3455 1782 * 4002 * 3761 3811 3751 5669 4565 * 3752 5566 4629 4855 4393 * * 60 0 * * * * * * 7753 0 0 S 61 265 6288 * * * 4544 * * * * * * * * * 3157 * * * * 61 0 * * * * * * 7753 0 0 K 62 6662 * * 1926 * 5739 5893 6363 1149 * 6788 * * 2953 4027 6428 5865 * * * 62 0 * * * * * * 7753 0 0 K 63 5613 6860 * 3713 * 5401 3780 6348 2856 3370 5785 4401 * 2019 3097 5218 4188 4633 * * 63 0 * * * * * * 7746 0 0 R 64 3517 * 4535 3383 * 5664 4628 4280 3148 3210 5056 2340 * 4442 4054 3495 * 5749 * * 64 0 * * * * * * 7638 0 0 A 65 280 5066 * * * 5577 * 6160 * * * * * * * 4475 5274 4605 * * 65 0 * * * * * * 7638 0 0 A 66 156 4155 * * * 6350 * * * * * * * * * 5810 6989 6929 * * 66 17 * 6388 * * * * 7635 0 0 E 67 4481 6887 4951 2975 5735 6591 5251 5543 2374 5097 3727 6281 * 2791 2891 4679 5432 4909 * 5313 67 0 * * * * * 0 7615 0 1000 K 68 3163 * 3751 3098 6509 5602 5624 4679 2842 3199 4862 3472 * 4125 3328 4849 5501 5662 * * 68 0 * * * * * 0 7609 0 1000 M 69 1016 5741 * * 5242 * * 3598 * 3379 2572 * * * * 5858 4675 4128 * * 69 0 * * * * * 0 7635 0 1000 L 70 * 4785 * * 6625 * * 3536 * 579 6620 * * * * 6029 * 3427 5083 4322 70 0 * * * * 0 * 7625 0 1000 V 71 3650 * 3469 2080 * 6341 6124 6238 3256 4944 6197 4370 6078 3162 3425 4366 4712 4851 6206 * 71 0 * * * * * * 7640 0 0 E 72 3693 * 5808 3131 5485 6470 * 4309 2375 3658 6386 4893 * 3663 3747 3652 3465 4679 * 5237 72 0 * * * * * * 7451 0 0 L 73 * * * * 5243 * * 3148 * 314 * * * * * * 5686 4754 * * 73 0 * * * * * * 7413 0 0 Q 74 * * * 3474 * 4585 5963 * 1533 4609 6004 4935 * 2753 3085 3423 5357 4895 * * 74 0 * * * * * * 7057 0 0 K 75 * * * 4963 * * 5209 * 1651 4541 * 2702 * 2905 4389 2401 * 4178 * * 75 0 * * * * * * 6715 0 0 L 76 * * * * * * * 2107 * 485 4228 * * * * * * * * * 76 0 * * 0 * * * 5505 0 0 //