HHsearch 1.5 NAME d1dp7p_ FAM FILE d1dp7p_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1dp7p_.a3m DATE Wed Mar 10 06:45:48 2010 LENG 76 match states, 76 columns in multiple alignment FILT 94 out of 98 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4332 0.9414 SEQ >ss_dssp CHHHHHHHEEEEEEEEEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHSTTCEEEEESSTTCCEEEEEEEEECC >sa_dssp DDEBADDCBCDCEEDCCCCDDACECBCDCAEEDEEEDDEDEDABECADEBBEEBEDDECEEEEEDEDBBDCADDDE >ss_pred CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCEEECC >ss_conf 9469987423078970008999999999999749974487789999999789996688546998434220437819 >Consensus TxxWLxxnxexxxxxsvPRxxiYxxYxxxCxxxxxxplxxAxFGKxirxvFPxxxxRRlgxrGxskYhyxGirxka >d1dp7p_ TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKA >UniRef50_Q65YQ9(392-461:841) Transcription factor dRFX2 n=1 Tax=Drosophila melanogaster RepID=Q65YQ9_DROME E=3e-22 s/c=1.51 id=34% cov=93% ----LIKTFKISANAVCPRNIVYLKYVENCKEHQISPICNAAFGKLVKIFHPDIKTRRLGVRGSSRYNYCGLEL-- >UniRef50_Q09441(623-680:1244) ARID domain-containing protein C08B11.3 n=2 Tax=Caenorhabditis RepID=YP83_CAEEL E=6e-10 s/c=1.12 id=21% cov=76% TEKWIRQNCVFEPAMSTPRGELYAAYVDDLRNLYHSMSGSlAMFSGVMKNLYPDVNFR------------------- >UniRef50_C4Q872(117-189:1109) Rfx5, putative n=1 Tax=Schistosoma mansoni RepID=C4Q872_SCHMA E=2e-22 s/c=1.45 id=32% cov=96% ---WIMSHLEEDPSTCLRKDEVYDDYRAYCEKHHMKTLNTADFGKVMKRAFPNVKPRRLGQRGQSRYCYGGMRKK- >UniRef50_A0JPE6(522-601:1570) AT rich interactive domain 2 (ARID, RFX-like) n=4 Tax=Danio rerio RepID=A0JPE6_DANRE E=8e-18 s/c=1.14 id=27% cov=101% TTQWLNAHFEVHSDGSVSRSEMYSEYLATCSKMaRGGVLTSNNFYKCLRTLFPNHTVKRVedtRLNGQAQIHVVGVRKRA >UniRef50_B7QLP6(391-466:1271) Putative uncharacterized protein n=2 Tax=Ixodes scapularis RepID=B7QLP6_IXOSC E=2e-15 s/c=1.10 id=26% cov=96% ---WVRAMYEPApPGCSVARNDIYAEYVTFCSKAGRKsVISASVFANCVKAVYSQTGIRRVdNANGMMSFHHDGLRKR- >UniRef50_C4QES9(777-850:1356) Expressed protein n=1 Tax=Schistosoma mansoni RepID=C4QES9_SCHMA E=8e-13 s/c=1.01 id=26% cov=95% --EWLKSNYAVHNHSSIPRIQIYNEYQKAHLQRfkNIVAISPVDFHSQIKTIFPGVGQVKVQVPGGSvEIHYNNLK--- >UniRef50_UPI0001C37C1E(369-432:446) primase, putative n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37C1E E=1e-12 s/c=1.16 id=26% cov=86% -----------DEKGSVPVSVLYEAYKIWCNENALDADDKSEFKESVLSYSPSIDFKKVGPRNSRKIGFKGIRLK- >UniRef50_A9V5G7(369-443:1137) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V5G7_MONBE E=6e-08 s/c=0.78 id=30% cov=70% ---WLTATfaYKGDHATALRRAEMYRSYVAVCQNENRVPLCTEVFGKLIMECFPGTK--------------------- >UniRef50_B1HWF2(601-654:656) Putative uncharacterized protein n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HWF2_LYSSC E=6e-10 s/c=1.21 id=25% cov=72% --------------------DLYQAYIVYCENYSFKIISKKSFIQILKKQ-SNLSFRRFRMRGTNKYGFIGIGLK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 3860 0 0 V 2 4000 3251 * 4230 * * * 2249 * 1649 * * * * * * 4250 2554 * 5202 2 0 * * * * * * 4463 0 0 Q 3 3626 5154 4979 3213 * * 4849 * 2840 5872 5734 3031 * 2351 5028 4369 3718 3886 * * 3 0 * * * * * * 4629 0 0 W 4 * * * * * * * * * * * * * * * * * * 0 * 4 0 * * * * * * 4894 0 0 L 5 * * * * * 6028 * 1987 * 621 * * * * * * 4843 4405 * * 5 0 * * * * * * 4860 0 0 L 6 * * 5450 4897 7052 6855 4258 4654 3170 3397 3198 3423 * 5177 2064 5485 3763 5082 4843 * 6 0 * * * * * * 4860 0 0 D 7 2256 4703 4184 2535 * 5838 * * 3245 * 5560 3298 * 4001 4637 2815 4873 * * * 7 22 6028 * 0 * * * 4860 1000 0 N 8 5535 * * * 6526 * 2199 * * 6167 5856 1135 * * * 4542 2662 4002 * * 8 27 5763 * 1000 1000 * * 4860 1000 0 Y 9 * 1826 * * 2778 * * 6337 * 2494 * * * * * * * * * 1387 9 0 * * * * * * 4860 0 0 E 10 4169 6223 4214 761 * * * 5459 4272 * * * * 5305 5836 5414 4378 3350 * * 10 0 * * * * * * 4860 0 0 T 11 3577 5658 * 2238 4260 5763 4657 3821 4585 3478 4805 4959 3893 * 5869 6014 4117 2770 * * 11 22 6079 * 0 * * * 4860 1000 0 A 12 2683 2781 2430 4096 * 5001 3504 * 5133 5864 * 3839 * 4501 * 2842 * * * 4787 12 78 4831 5842 509 1750 * * 4991 1497 0 E 13 3701 * 3687 2187 * 6907 5251 * 5046 * 5659 4871 1764 6482 * 3041 3975 5932 * * 13 25 5878 * 1000 1000 0 * 4989 1000 1219 G 14 3612 * 2509 3509 * 1701 4875 * 4119 6374 * 2803 6104 4809 * 6581 4659 * * * 14 73 * 4338 * * * * 4991 0 0 V 15 2859 4557 * * * 2558 * 3882 * 6243 5119 6008 * * 5657 2855 2594 2315 * * 15 39 5238 * 1000 1000 0 * 5121 1000 1776 S 16 4745 2847 * * 6639 5736 * * 5048 * * 5017 * * * 819 * 3300 * 3932 16 38 5283 * 0 * * * 5022 1581 0 L 17 * 5480 * * * * * 2251 * 1849 6317 * * * * * 4135 1250 * * 17 0 * * * * * * 5270 0 0 P 18 4266 * 4905 6213 * 6509 * * * 5162 * * 477 5767 3615 4514 * * * * 18 0 * * * * * * 5270 0 0 R 19 * * * * * * 5991 * 2713 * * * * 5005 392 * * 4693 * * 19 0 * * * * * * 5270 0 0 S 20 3953 3620 4898 6509 * 2893 6600 4016 * 4628 * 3098 6281 2594 * 2450 5227 4466 * 6361 20 0 * * * * * * 5270 0 0 T 21 4891 * 3403 2022 5325 4930 5511 3455 5971 4877 * * 6528 3767 2664 3984 4144 4547 * * 21 0 * * * * * * 5306 0 0 L 22 * * * * * * * 2068 * 1409 3094 * * * * * * 1899 * * 22 0 * * * * * * 5306 0 0 Y 23 * * * * 3079 * 4981 * * * * * * * * * * * * 234 23 0 * * * * * * 5306 0 0 N 24 1822 5408 3241 2749 5386 6331 6762 * 3343 5489 6830 3453 * 5856 5888 3106 5494 * * * 24 0 * * * * * * 5306 0 0 H 25 3403 6012 4202 2284 * * 2526 6323 4553 5848 * 4498 * 3345 3835 3737 3728 6298 * 6939 25 0 * * * * * * 5306 0 0 Y 26 * * * * * * * * * * * * * * * * * * * 0 26 0 * * * * * * 5306 0 0 L 27 2897 * * * 6689 * 6213 4572 3454 2163 5068 6532 * 4546 3514 6286 5004 2132 * 4542 27 0 * * * * * * 5306 0 0 L 28 2801 * 3150 3147 * 6156 7026 3295 3497 5990 6532 6016 * 3772 3644 3381 3331 5148 * * 28 0 * * * * * * 5306 0 0 H 29 3190 6722 4545 * 2574 * 3512 4111 5339 5255 6668 5489 * 6956 4905 3198 3794 4237 4776 2947 29 27 * 5761 * * * * 5306 0 0 S 30 4665 237 * * 6355 * 4657 * * 5476 * * * * * 5295 6370 * * * 30 13 6778 * 3807 107 0 * 4891 1000 1000 Q 31 3008 * 3968 2784 * 4286 * * 4666 4083 6532 2847 * 3068 3760 2699 5632 * * * 31 0 * * * * * * 5306 0 0 E 32 4771 * 4310 2644 * * 6298 * 2345 5524 * 2819 * 2912 3089 3781 4136 * * * 32 12 6891 * 1585 585 * * 5306 1000 0 Q 33 4514 5255 5290 4042 5103 * 3375 5415 * 2356 4022 2383 * 4276 4479 4757 4902 6855 * 3823 33 124 3604 * 413 2006 * * 5306 2270 0 K 34 4191 * 4695 * * 2299 4585 4858 3386 * * 2617 * 3622 2918 3304 5565 * * 4930 34 27 5769 * 0 * * * 5306 1647 0 L 35 5056 7016 * 6323 4996 5009 4556 2466 6689 1989 3739 * 6891 5602 3402 6559 4658 3163 * 4578 35 15 6628 * 0 * * * 5306 1000 0 E 36 7019 * 3649 3155 * 3873 4356 5589 2268 6689 * 3916 5979 5906 3676 3086 3728 3740 * * 36 156 3286 * 881 1129 * * 5306 2625 0 P 37 2988 * * * * * 5979 3321 * * 5358 * 1032 5542 * 5647 5660 2867 * 4427 37 28 5690 * 3740 112 * * 5306 1248 0 V 38 4381 * 4576 * 5248 * * 2539 * 1030 5360 * 5851 * * 5259 5664 2893 * * 38 0 * * * * * * 5265 0 0 N 39 4181 3394 4576 * * 3630 5912 * * * * 1757 5087 5938 * 1648 4324 * * * 39 0 * * * * * * 5265 0 0 A 40 1824 * * * * 5800 * * 4017 * * 5420 2178 2946 * 2705 3302 6789 * * 40 38 5259 * 0 * * * 5265 1000 0 A 41 707 * * 5920 * * * * 5656 4344 * 6344 5009 * * 2850 3567 4817 * * 41 26 5800 * 1000 1000 * * 5265 1000 0 S 42 5420 * 2712 3809 * 4961 4063 * 4907 6676 5259 3401 * * * 1694 2754 4663 * * 42 39 5212 * 3692 116 * * 5265 1179 0 F 43 * * * * 276 * * * * 2661 5955 * * * * * * * * * 43 0 * * * * * * 5122 0 0 G 44 6320 * * * * 469 4880 5564 4510 5561 * * 4335 * * 4502 5902 * * 4855 44 0 * * * * * * 5122 0 0 K 45 * * * 4510 * 5222 * * 492 * * 4477 * 5564 3079 4880 * * * * 45 0 * * * * * * 5122 0 0 L 46 6123 2591 * * 5783 * * 2504 * 1350 6843 * * 4592 * 4362 4950 3295 * * 46 0 * * * * * * 4725 0 0 I 47 * * * * * * * 1390 * 2319 3141 * * * * * * 1715 * * 47 0 * * * * * * 4725 0 0 R 48 * * * * * * 5018 * 1461 4362 6210 * * 4630 990 * * * * * 48 0 * * * * * * 4725 0 0 S 49 3759 5592 6353 4061 * 7138 5676 3414 5342 3216 * 4721 * 3221 4061 2338 2856 4659 * * 49 0 * * * * * * 4725 0 0 V 50 4530 4785 * 6546 5535 * * 2809 4659 3002 6079 * * 4080 * * 5125 1218 * 4362 50 36 * 5342 * * * * 4725 0 0 F 51 * * * * 412 * 5569 * * * * * * * * 4357 * * * 2484 51 24 5944 * 0 * 0 * 4801 1000 1000 M 52 * * * * * * 6553 7040 * 7241 6404 * 212 * * 3647 6248 * * 7121 52 0 * * * * * * 4585 0 0 G 53 5396 * 3042 5518 7201 2257 4182 * 5276 5644 * 1713 * 4372 5666 2949 6193 * * * 53 0 * * * * * * 4585 0 0 L 54 4951 * * 6429 * * 4182 2483 * 1508 5560 * * * * * 3375 1984 * * 54 0 * * * * * * 4585 0 0 R 55 4666 * 4354 4951 * 3056 6429 6280 2011 4149 * 4852 * 4064 3201 5254 2447 5842 * * 55 0 * * * * * * 4585 0 0 T 56 3378 * * * 3371 * * 2805 * 6268 5867 6619 3619 4123 * 4061 1372 4688 * * 56 0 * * * * * * 4573 0 0 R 57 * * * * * * * * 2033 * * * * * 482 * * 4648 * * 57 0 * * * * * * 4573 0 0 R 58 * * * * * * * * 3337 4474 * * * * 224 * * * * * 58 0 * * * * * * 4467 0 0 L 59 * * * * 3721 * * * * 540 * * * * * * * 2080 * * 59 115 3711 * 1147 867 * * 4467 1686 0 G 60 * * 5443 * * 429 * * * * * 3751 * 4486 4222 5361 4747 * * * 60 67 4460 * 0 * * * 4467 1000 0 T 61 5116 * 4460 * * 4278 6510 * * 5431 2959 * 4177 5475 7485 3416 1620 2541 * 4747 61 8 7459 * 4700 57 * * 4467 1000 0 R 62 * * * * * 4747 * * * * * 3331 4486 4460 371 * * * * * 62 0 * * * * * * 4467 0 0 G 63 * * * * * 140 * * * * * 3434 * * * * * * * * 63 0 * * * * * * 4467 0 0 N 64 * * 4678 3444 * 4486 4130 * 3516 * 5116 2535 * 1775 5255 3434 3886 * * * 64 10 * 7243 * * * * 4467 0 0 S 65 3989 * * * * * * * * * 5114 3884 4459 * 4176 519 5720 5440 * * 65 66 4484 * 0 * * 0 4468 1000 1000 K 66 * * * 4484 * * 5360 * 685 4459 * * * 3885 2795 5114 * 5440 * * 66 0 * * * * * 0 4468 0 1000 Y 67 * * * * 3834 * * 2761 * * * * * * * * * * * 354 67 16 * 6499 * * * 0 4468 0 1000 H 68 * 3124 * * 4762 3555 629 * * * * 3620 4815 * * * * * * * 68 0 * * * * * 0 4474 0 1478 Y 69 * * * * 3166 * 5047 3862 * * * * * * * 5291 * 4401 * 481 69 0 * * * * 919 1086 4474 0 1478 Y 70 4532 2433 4453 * 5911 6340 * 5017 4189 3445 5792 3794 * * * 3435 3604 3203 * 2775 70 15 6557 * 2322 322 0 * 4470 1000 1000 G 71 5600 5952 4814 * * 219 * * * * * 3862 * * * * * * * * 71 0 * * * * * * 4470 0 0 L 72 6453 * * * 4514 * * 1166 * 1949 3982 * * * * * * 2498 * * 72 0 * * * * * * 4470 0 0 R 73 4888 4356 5883 4894 * 4166 * * 2281 * * 6396 * 3716 1101 4608 6609 * * * 73 0 * * * * * * 4581 0 0 I 74 * * * * * * * 2562 1866 1330 * * * * 3572 * * 3751 * * 74 0 * * * * * * 4406 0 0 K 75 * * * * * * * 4677 762 * * * * * 1430 * * * * * 75 0 * * * * * * 4267 0 0 A 76 374 * * * * * * * * * * * * * * 2131 * * * * 76 0 * * 0 * * * 2924 0 0 //