HHsearch 1.5 NAME d1dn0b2 FAM FILE d1dn0b2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1dn0b2.a3m DATE Mon Mar 8 21:52:16 2010 LENG 96 match states, 96 columns in multiple alignment FILT 103 out of 584 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.7 EVD 0.4372 -0.8355 SEQ >ss_dssp CCCBCCEEEEEECCCCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCCCCCEEEEEEECTTCCEEEEEECCC >sa_dssp EEDCCADBDDDDDEEECDDABACACDACDDDCDCDACCDEEDEBEDDDEDECDEEEDCCABDACADBDDEEEEDECABACADBEDCEDEDDADCCE >ss_pred CCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEEECCEECCCCEEECCEECCCCCEEEEEEEEEEHHHCCCCEEEEEEEECCCCEEEEEECCC >ss_conf 977877799621689867999998076577579999988948135403022274798679999999825555897599999918985669887069 >Consensus gxxxxPxvxxxxxxxxxvtlxCxaxgfxPxxixvxWxxxgxxxxxxxxxxxxxxxxgtxxxxsxlxvxxxxxxxxxytCxVxHxxxxxxxxixlpV >d1dn0b2 GSASAPTLFPLVSCTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVTDEHVVCKVQHPNGNKEKNVPLPV >UniRef50_P01854(319-422:428) Ig epsilon chain C region n=2 Tax=Catarrhini RepID=IGHE_HUMAN E=4e-08 s/c=0.57 id=19% cov=101% GPRAAPEVYafatPEWPgSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHstTQPRKTKGSGFFVFSRLEVTRAEWeQKDEFICRAVHEAASPSQTV QRAV >UniRef50_UPI00016DF8F3(1-100:105) UPI00016DF8F3 related cluster n=2 Tax=Takifugu rubripes RepID=UPI00016DF8F3 E=7e-07 s/c=0.55 id=19% cov=97% -SSLPPpvlTVFPPSRAelqSNKATLVCL-SRLSAPFAEVSWLLGDTSVSSGISTsTPVQQADQTFQISSHLSILTSAWDaQKVYTCKVSVGSQTAEKSI KK-- >UniRef50_O00241(145-231:398) Signal-regulatory protein beta-1 n=77 Tax=Eutheria RepID=SIRB1_HUMAN E=2e-08 s/c=0.70 id=20% cov=85% --PSAPVVSGPavrATPEHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPAGDSVSYSIHSTARVVLTRGDvHSQVICEMAH------------- >UniRef50_UPI0001760A81(244-321:554) PREDICTED: similar to paternally expressed 10 n=2 Tax=Danio rerio RepID=UPI0001760A81 E=7e-12 s/c=0.92 id=17% cov=80% -------------------VSCLATGFYPRHINLTLLRDGQPVSDHEFTGGDllPNGDGTYQMRKSLEIRAEDSEKHKYTCSFKHLDKEWHIDLAEP- >UniRef50_C3YN10(148-239:988) Putative uncharacterized protein n=4 Tax=Branchiostoma floridae RepID=C3YN10_BRAFL E=6e-10 s/c=0.71 id=16% cov=89% ----------VISVGRAVSLSCFVRNAKPNITALRWTKDGAEIDSAR--FETKYSGGNLQSPNLVIRHITRSDAGVYTCTADHVVRPGSASLTLNV >UniRef50_O73716(143-234:280) B-G-like protein n=1 Tax=Grus americana RepID=O73716_GRUAM E=2e-05 s/c=0.54 id=17% cov=75% ---------------------CRSAGWYPRP-EVLWKDPGGQHLPSVSQRYSFDERGLFDTEDVIIVTDGNRDG-KWSCVVRNSHLNQEQETSL-- >UniRef50_UPI000180C70B(143-235:617) PREDICTED: similar to histocompatibility ligand membrane-bound form n=1 Tax=Ciona intestinalis RepID=UPI000180C70B E=0.0007 s/c=0.48 id=19% cov=93% ----PPSGIKLTtlTSGNNLTLTCRSTRSKPS-ADITWIITTPEASWEIQSSKTVSEGPDTIGYLYQTITPKD-KGTTFTCVVNHPETSTTlkKNVSL-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 2413 * * * * 300 * * * * * * * * * * * * * * 1 0 * * * * * * 4401 0 0 S 2 2008 * 3929 * * 4004 * * * 3730 * 3225 3214 * 4055 2509 3359 * * * 2 0 * * * * * * 5138 0 0 A 3 2866 * * * * 4382 * * 5148 * * * 1461 * 3795 2642 2386 * * * 3 0 * * * * * * 6113 0 0 S 4 2932 * * 5258 * * 4961 * 4239 5246 * * 4910 5115 5146 1392 2639 3327 * * 4 0 * * * * * * 6516 0 0 A 5 1346 * * 5097 5491 * * * 5087 * * * 1334 * 4300 3676 * * * * 5 0 * * * * * * 6710 0 0 P 6 * * * * * * * 5146 5198 * * * 142 * * * * 4709 * * 6 27 5770 * 1585 585 * * 6912 1000 0 T 7 4370 * 3969 4286 * * * * 3879 5528 4381 * * * 5158 1378 2763 2849 * * 7 39 * 5225 * * * * 6970 0 0 L 8 * * * * * 5179 * 3837 5096 2825 5347 5208 5290 * * * * 611 * * 8 57 5453 5955 0 * * 0 6918 1000 1000 F 9 * * * * 1617 * 4955 4299 * 4438 5085 5201 5300 5146 5546 2617 3807 * 5182 2727 9 188 3782 4345 1425 672 946 1056 6926 2282 1722 P 10 5086 * 5279 3916 * 4395 5174 4178 4200 3175 4999 * 1712 * * 5438 5924 2531 * 4880 10 73 4350 * 2646 251 1523 617 6875 1643 2194 L 11 * * * 4301 3932 * * 3906 * 1627 3711 * 3722 * 3855 4785 4384 2412 * * 11 118 3671 * 1326 734 982 1018 7271 2190 1657 V 12 3741 5471 * 6049 5563 5209 4854 4208 4395 3953 5487 * 2726 4093 5454 3783 3546 2446 4577 * 12 68 5518 5366 1000 1000 0 * 7341 1000 1000 S 13 * * * 4124 * * 5444 5659 5911 * * 6123 1650 3060 3406 2201 3075 * * * 13 149 3348 * 1681 539 * 0 7346 3088 1000 C 14 2977 3160 * 5774 * 4550 4261 * * 4240 * * 4156 * 4692 1456 4065 4780 4656 * 14 119 3664 * 2370 310 * 0 7362 2694 1000 T 15 6025 4266 * 2780 * 1351 6381 * 5176 5989 * 5299 6330 6082 6057 2317 3808 * * * 15 74 4314 * 2639 252 0 * 7629 2616 1000 S 16 4166 * 4401 3560 * 4116 4716 * 2938 * * 3248 5996 2320 6345 2158 5929 6366 * * 16 82 4174 * 2005 414 * * 7692 2689 0 S 17 4681 * 6097 4066 * 4863 * * 3338 5152 6454 3704 3078 4048 4806 2071 2699 5027 * * 17 147 3576 6274 1672 543 * * 7714 3427 0 V 18 2759 * * 6297 * 5458 6072 3899 6196 2853 6282 4485 * * 6269 * 3327 1335 * 5943 18 16 * 6509 * * 0 * 7803 0 1000 A 19 5138 * * 4425 5868 * * 4836 3762 5521 * 3435 5142 4104 5567 4069 1115 4153 * * 19 0 * * * * 0 * 7821 0 1000 V 20 5118 * * * 3279 * * 3711 * 727 6599 * * * * * * 2978 * 4304 20 0 * * * * * * 7874 0 0 G 21 4223 * 6413 5421 * 3765 6490 4042 6434 3334 5930 6335 * 5387 4942 2711 1642 3366 * * 21 0 * * * * * * 7874 0 0 C 22 * 29 * * * * * * * * * * * * * * * * * 5668 22 0 * * * * * * 8034 0 0 L 23 * * 5158 3947 4965 * 3188 5045 5608 1723 6566 6538 * 5691 3476 3854 3778 3742 5344 4657 23 13 * 6833 * * * * 8034 0 0 A 24 1416 * * * * * * 2800 * 4147 6601 * * * * 3161 4855 1897 * * 24 0 * * * * 0 * 8036 0 1000 Q 25 4763 6731 6488 3391 5622 * 5091 5746 3472 5622 6493 5021 6004 3914 4659 2400 2031 4576 6855 5606 25 21 6101 * 1000 1000 * * 8034 1000 0 D 26 * * 2456 4260 * 1093 6207 * 4812 * * 3554 6405 6779 3778 4232 6016 * * * 26 36 * 5356 * * * * 8017 0 0 F 27 4384 6341 6544 * 788 4995 * * * 4101 6183 5214 * 6741 6689 4234 6718 5460 4687 3713 27 14 6672 * 0 * 536 1688 8018 1000 1999 L 28 5141 6023 * * 2844 * 5030 * 3980 5686 5929 4546 4092 5629 5171 2982 4557 * 6562 1481 28 30 6446 6825 1000 1000 0 * 8028 1000 1000 P 29 5274 * * 5487 * * * * * * * * 208 * * 5663 4239 6199 * * 29 76 5570 5057 0 * * 0 8017 1559 1000 D 30 2697 * 2828 3359 * 5198 6627 * 3325 6527 * 3689 3225 3812 3399 3545 6771 6142 * * 30 128 6973 3702 1000 1000 1012 988 7973 1000 2727 S 31 3896 * 2880 4396 4936 4051 4477 3915 5188 5932 * 3123 2772 5630 6308 3099 4759 4216 * * 31 128 * 3558 * * 158 3271 7871 0 4251 I 32 3440 * * * * * 6316 1253 * 2811 5567 * * * 6367 4557 5537 2084 * * 32 84 5907 4641 0 * 0 * 7876 1000 4030 T 33 4434 * 3639 3191 5722 6504 5448 * 2987 4884 5689 4149 * 3484 3741 3828 2144 * 6101 * 33 0 * * * * 1056 946 8001 0 2741 F 34 * * * * 3521 * * 2333 * 1848 3760 * * * * * * 1590 * 5025 34 0 * * * * 0 * 8001 0 1779 S 35 * * 5932 4439 5087 6671 5907 4596 3009 5486 5740 6486 * 3639 3306 2354 2045 5315 * 5682 35 0 * * * * * * 8025 0 0 W 36 * * * * 6747 * * 6533 * 4371 * * * * * * * 6150 124 * 36 62 5689 5470 2114 379 * * 8025 1678 0 K 37 * * 4815 3904 3495 * 5615 4877 2851 2111 4406 6800 * 5655 4511 4773 3340 4980 4725 4066 37 51 4841 * 803 1228 * 0 7991 2569 1741 Y 38 5214 * 4765 2991 6789 6668 4933 6331 2597 3817 6857 6296 6694 4135 2195 3701 6475 3222 * 6879 38 14 6717 * 1000 1000 0 * 7991 1000 1741 K 39 4190 * 2254 4036 * 3054 6503 5428 3517 * * 1718 6009 4815 5672 4449 6353 * * * 39 0 * * * * * * 8025 0 0 N 40 * 6112 3228 4365 * 1124 * * 4060 6503 * 2752 * 5640 6534 3315 5590 * * * 40 13 * 6819 * * * * 8025 0 0 N 41 3896 * 5188 3381 * 3029 5301 5080 2651 4712 6954 3726 4746 3315 6598 4947 3656 3456 * * 41 67 5762 5231 2044 401 * 0 8019 1648 1000 S 42 3801 * 4510 2038 * * * 4394 4014 5630 * 4262 2933 4309 6290 3374 3929 3630 6564 6437 42 10 * 7125 * * 1940 436 7999 0 2795 D 43 3996 * 5447 3790 4857 4976 5938 2709 4643 2449 5157 6011 5070 4603 4466 4612 5712 2610 * * 43 0 * * * * 399 2050 8001 0 2661 I 44 4743 * 4378 4706 * * 4916 4285 3929 3580 6679 5660 3353 3445 4111 2995 2624 3684 * * 44 28 5691 * 560 1637 0 * 8019 1680 1000 S 45 4105 6744 3853 3289 * 3188 4950 * 4274 4512 * 3373 3992 4146 * 2734 3198 5667 5134 * 45 31 6408 6745 1000 1000 * * 8025 1000 0 S 46 3108 5555 3422 3442 4863 2657 4835 6843 4965 4803 6492 5011 3530 5645 4909 3594 5222 4291 5680 6534 46 13 6779 * 3000 193 * 0 8018 1000 1000 T 47 * * 4954 3825 5624 4468 5597 3592 4379 5924 * 5846 5148 3224 4265 3430 3168 2137 * 5179 47 79 5138 5313 1110 898 0 * 8018 2241 1000 R 48 5431 * 6470 3679 4623 5874 5802 5553 4791 4182 5574 4474 5652 2545 4259 3116 2853 3141 * 5455 48 57 5031 6917 776 1265 * 0 8009 2364 2345 G 49 4976 * 6454 5053 6580 4872 3876 6780 5037 3935 6558 3227 4384 3100 5645 2683 2235 5101 * 6676 49 57 5634 5740 1909 447 0 * 8010 1737 2755 F 50 4918 * 4174 3787 4474 2937 4705 6610 5205 * 7087 3980 4815 4117 5995 3050 3160 3301 6404 4003 50 13 6804 * 0 * * 0 8014 1000 1711 P 51 6320 * 3786 3788 6581 4403 4367 4675 4471 6855 6037 5849 1959 6641 5089 2574 3509 6616 * 4367 51 27 7014 6509 1000 1000 0 * 8014 1000 1711 S 52 3498 * 3895 3552 * 6856 6642 4597 3470 3906 * * 4321 3510 4330 3226 3189 3410 * 4510 52 83 5126 5213 389 2082 0 * 8007 2080 1000 V 53 4447 6389 5140 3444 4495 * * 4306 3800 3608 4438 5508 3049 3569 3581 4969 4496 2932 6762 * 53 54 4760 * 849 1168 * 0 8003 2293 1537 L 54 5088 * 3742 3868 * 6534 4401 4766 3756 3024 4764 2821 3919 2847 * 4051 4585 * 6984 4566 54 87 4363 6688 718 1352 784 1255 8003 3009 1537 R 55 5281 * 4027 3545 6578 3598 4770 * 3326 6483 6464 3969 2734 6397 4085 2307 4837 4976 6633 6445 55 54 4771 * 820 1206 * 0 8013 2744 1640 G 56 6534 * 1417 6633 * 2291 * * 4428 * * 2243 6780 6288 5999 3676 5223 * * * 56 43 5100 * 731 1332 * 0 8013 2260 1640 G 57 4776 * 3422 6592 6563 810 6233 * 4558 * * 4587 6336 6856 6397 3741 5279 6556 5129 6805 57 54 4777 * 746 1309 * 0 8013 2546 1640 K 58 * * 4571 * * 5312 6483 * 3149 3231 6725 3711 6288 * 4711 3219 1322 * * 4104 58 45 5527 6756 2217 349 * 0 8013 1671 1640 Y 59 6627 5761 * 5869 1639 6412 5535 4997 * 3730 * * * 6782 * 5194 5484 6568 4925 1354 59 0 * * * * 1488 636 8006 0 2134 A 60 4463 6282 5270 4970 4669 * 6806 5492 5134 5662 4844 3708 * 2697 5509 2092 2352 6584 7066 5079 60 15 6570 * 2000 415 896 1112 8016 1000 1510 A 61 2709 6764 * * 5038 5588 * 3716 4821 3007 4407 6817 * 3822 5888 3813 2683 2707 * 5212 61 18 6302 * 0 * * 0 8024 1000 1000 T 62 5740 * 5678 3890 3541 * 5691 3834 * 4720 * 6165 5116 5018 4584 2434 2628 3205 4456 3948 62 18 * 6320 * * * 0 8024 0 1000 S 63 5523 5656 6001 * * 4654 6762 4795 3913 4492 5652 4384 6797 6046 5342 902 3741 5615 * * 63 13 * 6830 * * 1263 778 7986 0 1525 Q 64 3808 * 6426 3875 6868 * 4263 * 4378 2696 6055 4840 * 3433 4049 4085 3195 3869 3631 3932 64 9 * 7268 * * 907 1100 7975 0 1691 V 65 5579 * * * 6961 6459 6082 2989 * 1087 6174 * * 5052 * 5583 3759 2492 * 4980 65 13 6785 * 1585 585 965 1036 8017 1000 1534 L 66 5474 * 4729 3546 6059 6602 6515 3806 4657 3097 5576 5299 4151 6314 4319 3297 1825 5020 6688 * 66 20 6175 * 0 * * 0 8013 1000 1000 L 67 6562 7058 * * 3621 6542 * 2428 5743 2503 6744 6059 6314 * 5113 * 4630 1386 * 5627 67 58 5994 5405 1599 578 * 0 8013 1691 1000 P 68 * 6592 4809 3982 * 5737 4315 * 5143 4778 6965 3463 2302 4449 4564 3374 2527 3939 * 4955 68 44 7110 5465 0 * 604 1548 7970 1000 2316 S 69 2367 * 5209 4994 * 6951 6452 4595 4153 3359 6282 5774 2502 4849 4524 3748 3230 3915 * * 69 59 6779 5013 0 * 546 1666 7958 1000 2398 K 70 3017 * 4581 3555 * 3703 6530 6423 3484 6442 * 4164 6006 3581 4129 2161 3425 6706 6496 * 70 61 * 4603 * * 1905 448 7960 0 2709 D 71 3842 * 2366 2248 6215 * 6881 * 4917 3931 * 5195 4770 3630 3269 4137 5881 4082 * 5388 71 138 * 3454 * * 2653 250 7932 0 3481 V 72 5352 * 3278 3861 5391 3278 * 5443 * 4185 4505 4445 * 5609 3719 4002 * 5193 1632 * 72 298 2791 4571 315 2349 675 1420 7900 4559 5235 T 73 3729 6132 1394 3667 * * 5560 6684 4194 * 6329 3036 3779 6683 4112 5231 4216 * * 6592 73 225 2793 * 0 * 164 3220 8020 4986 4287 D 74 3929 * 5143 4521 * 1358 4771 * 3421 6728 * 3694 6604 3795 4861 3640 5195 4993 * * 74 74 5349 5299 0 * 0 * 8019 2106 1000 E 75 3352 * 2980 3192 * 3303 6912 * 3990 5047 * 3291 * 3404 4870 3273 3601 4428 * * 75 15 6623 * 0 * 883 1127 7967 1000 1641 H 76 6531 * 5039 3412 6797 7001 3459 5629 3464 5279 5519 3632 * 5090 3659 3065 2592 3011 * * 76 158 3692 5235 190 3022 0 * 8010 3735 1000 V 77 6375 * * * 1820 * * 5090 * 3829 * * * * * * * 2898 5986 1136 77 40 6072 6357 0 * 0 * 7996 1062 1722 V 78 5520 * * 5819 6416 6651 6389 4088 3672 6680 5322 * * 5136 3909 2356 1416 3659 * 6563 78 28 5677 * 0 * 0 * 8008 1000 1000 C 79 * 35 * * * * * 5386 * * * * * * * * * * * * 79 16 * 6525 * * * * 8019 0 0 K 80 * * * 2868 * * 4306 4399 3798 3709 5539 5462 * 3805 2817 4401 3667 2274 6148 6373 80 0 * * * * 0 * 8006 0 1000 V 81 2745 * * * 5092 6047 * 4921 * 6624 5482 * * * * 6582 6311 528 * 5356 81 0 * * * * * * 8019 0 0 Q 82 4632 * 4639 2897 6377 5111 4189 6397 3339 5114 6562 3582 * 3067 4488 3072 3211 4410 6537 7102 82 46 6243 5776 2000 415 * * 7999 1000 0 H 83 * * * * * * 430 * * 6694 * 2639 * 5430 * * 6239 5467 * 5129 83 38 * 5258 * * 1000 1000 7976 0 1582 P 84 4502 6227 4205 2287 6436 4124 * * 2627 6468 6613 4381 2481 * 6614 2973 4856 5385 * 6979 84 107 3808 * 1149 865 1404 684 7851 2819 2277 N 85 2339 * 4588 5062 * 3222 4508 5952 5923 5325 * 3008 3994 6510 6003 2742 3618 4420 * 5019 85 68 4438 * 1664 547 * 0 7771 1767 1691 G 86 4035 * 4975 5315 * 2046 4741 5323 3444 3178 5656 4810 * 5030 4493 2490 3907 * * * 86 0 * * * * * 0 7806 0 1691 N 87 * * 6288 3029 * 3784 4652 * 4119 * * 2486 4226 5868 4359 2299 2609 5071 * * 87 0 * * * * * 0 7798 0 1691 K 88 3299 * 5621 4296 5569 4717 5718 3617 2494 4933 * * 4871 4159 4308 4847 3905 2747 3915 * 88 0 * * * * 977 1023 7763 0 1691 E 89 * * 3322 1812 5591 * 4561 5580 3846 5151 * 4798 4894 4963 4078 3410 2628 * * 5901 89 60 4627 * 1000 1000 0 * 7697 1724 1000 K 90 2843 4934 * 5062 * * 3924 4692 1722 3193 * * * 3222 * 4862 4191 3979 * 5557 90 0 * * * * * * 7607 0 0 N 91 * * 4848 2670 * * * 5731 * 5629 * 2003 4591 5545 5475 1711 2955 * * * 91 0 * * * * * * 7585 0 0 V 92 3635 * * * 3653 * * 1708 5958 2528 * 5589 * * * 5387 5182 2115 * 4598 92 0 * * * * * * 7499 0 0 P 93 4258 * 4606 4475 * * * 5377 3700 * * * 2459 3488 3728 1991 2620 * * * 93 0 * * * * * * 7369 0 0 L 94 5353 * * 4245 3802 * * * 2448 981 5381 * * * 3404 * 5716 5390 * * 94 0 * * * * * * 7213 0 0 P 95 5149 * 3316 * * * * * 3204 4931 * 2660 962 * 5086 * 5096 * * * 95 0 * * * * * * 6864 0 0 V 96 * * * * * * * 2428 * * * * * * * * * 297 * * 96 0 * * 0 * * * 6035 0 0 //