HHsearch 1.5 NAME d1dlja3 FAM FILE d1dlja3 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1dlja3.a3m DATE Tue Mar 9 02:50:56 2010 LENG 108 match states, 108 columns in multiple alignment FILT 113 out of 275 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.4427 0.9377 SEQ >ss_dssp CHHHHHHHTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECSSCCGGGGGGGGGEE CCCCSSCC >sa_dssp DEEBCCCBEECECEECBAAAACBCDDCEBECCEEADBDDCBEDADEDECDBABBADDCEECEEECEBDCBDDCEDABEDACBABBDCDDEDAEECEECCC CECEEEEE >ss_pred CHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEECCCHHHHHHCCCEEEECCCCHHHHHHHHHCC CCHHCCCC >ss_conf 9379999973388676799999874589840443849999999996698399983887752000484102698999702889998177867888776205 33110489 >Consensus axxiixxlxxxxxxxkxVxvlGlafKxxxddxReSpxxxiixxLxxxgxxVxxxDPxvxxxxxxxgxxlxxxlexxxxxaDvIVxxxxxxxxxxixxkvx trxifxxd >d1dlja3 AKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKNKVY SRDIFGRD >UniRef50_A8M0H2(306-404:444) UDP-glucose 6-dehydrogenase n=6 Tax=Actinomycetales RepID=A8M0H2_SALAI E=7e-07 s/c=0.56 id=18% cov=89% AQLIIDEMAElgRDPAAATVAVLGLAFKNNTSDLRATPVLGVVNALVKAGARVRLYDPVVDpgQADEMFGIRPTTNLHDAVRGADCVAVLAMHRQFDDI- ------------ >UniRef50_Q1RKF8(300-401:434) UDP-glucose 6-dehydrogenase n=16 Tax=cellular organisms RepID=UDG_RICBR E=4e-16 s/c=0.84 id=24% cov=91% ----IATLLDEDLKGKNIAVLGLTYKAGTDDVRASPAIEIIKNLLDKGTYVKAFDPMgLENSQKTFQNENLLYLDSAIKVCDssdaIIITTEWSEFQALD WQKIYS------- >UniRef50_C6MZK1(303-412:437) Nucleotide sugar dehydrogenase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZK1_9GAMM E=8e-11 s/c=0.62 id=20% cov=87% -ERVLNLVIEQNN--KNIGVLGF-FKENIDDLCENPIVEIIKRLIGKGYTLTLFDENVSEAKLYGvkrdyilnhiphlSELMVESIEELVDSSQTIIIGN KAAEFEHVFD----------- >UniRef50_D0Z977(314-420:420) UDP-N-acetyl-D-mannosaminuronate dehydrogenase n=31 Tax=Bacteria RepID=D0Z977_EDWTE E=2e-09 s/c=0.59 id=16% cov=71% --------EDKRASEATIACFGLAFKPDIDDLRESPAMEIAEMVAQwHSGTTLVVEPNIHQlPARLAGMAQLTDCATALAQADVVV-------------- ---------- >UniRef50_B5YJ56(302-407:437) VI polysaccharide biosynthesis protein VipA/tviB n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ56_THEYD E=8e-06 s/c=0.49 id=18% cov=95% AHEIVKILIKAGKKVKgsKILILGATFKENVPDLRNSKVMELSKELEDFGMQIYHYDPVVmkNDLNHEYRWNFIDDINHHSPYDCVVLAVKHEVFIKKFS LDFYSK------ >UniRef50_C5A2Z3(784-890:919) NDP-sugar dehydrogenase, containing HINT/DOD homing endonuclease intein n=2 Tax=Thermococcus RepID=C5A2Z3_THEGJ E=5e-13 s/c=0.70 id=23% cov=90% ----VKALNEVGRPVKgsNILVLGLTFRGGVREFMKAAAKPIIEELKEWGANVYAYDPLcTREDAERFGAEWKEDF----RDIDAIVITADHKEFReldl eKLAKEVRTRVI---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 3415 0 0 K 2 * * * 2830 * * 3635 * 1473 * * 3921 * 2766 * 2282 * * * * 2 0 * * * * * * 4323 0 0 Q 3 * * * 3010 * * * * 3022 2621 3975 3264 * 2049 2467 * * * * * 3 0 * * * * * * 4638 0 0 I 4 4690 * * * 4148 * * 914 * 4299 * * * * * * * 1630 * * 4 0 * * * * * * 4841 0 0 I 5 * * 4693 * 4430 * * 1841 * 1783 * * * * 4860 * 3532 2156 * * 5 0 * * * * * * 5065 0 0 N 6 3563 * 3046 4430 * * * * 1587 * * 1768 * 3627 * * 4625 * * * 6 62 * 4577 * * * * 5065 0 0 V 7 4319 * * 2081 4874 * * 1762 3837 3696 4539 * * 4413 * * 4956 3118 * * 7 0 * * * * * 0 4872 0 1000 L 8 * * * * 4001 * * 3584 * 589 4838 * * 4584 * * 4701 3755 * * 8 0 * * * * * 0 4896 0 1000 K 9 3262 * 3931 4404 * * * 3627 1514 2831 * 3640 * 5132 5086 4654 * * * 4898 9 36 * 5333 * * * 0 4968 0 1000 E 10 * * 2294 1530 * * * * 1967 * * 3517 * * 3693 * * * 5088 * 10 135 3481 * 761 1287 * 0 5010 2084 1638 Q 11 4715 4636 * 3588 * * 3794 * 2546 4762 4964 * * 2290 2503 * 3777 3789 * * 11 98 4901 4948 1000 1000 * 0 5010 1000 1638 E 12 * * 2813 2353 4728 2354 * * 3971 * 4784 3283 4935 4774 3600 * * 4755 * 4751 12 99 * 3915 * * 567 1621 5433 0 2025 S 13 3683 * * * * 4765 * 4025 2938 3323 * 2324 3330 * 4617 3063 2899 * * * 13 284 4724 2826 0 * 1545 605 5432 1000 1973 P 14 3848 5248 4708 3828 * 3307 * * 3039 * * * 1262 * 4681 3486 5168 * * * 14 127 * 3564 * * 1522 618 5298 0 3060 V 15 3223 * 3738 3243 * 2267 * 3375 4630 4964 * 4071 5028 4833 * 5276 5159 2674 * * 15 0 * * * * 1226 805 5177 0 3110 K 16 4094 * * * * 5981 * * 684 6013 * * 5857 3193 3684 4847 4364 * * * 16 176 3261 6608 1000 1000 0 * 4830 2584 2447 V 17 6490 * 4100 * * * * 3371 2471 * * 2811 * * 4295 6016 1598 3127 * * 17 0 * * * * 0 * 5139 0 1000 V 18 6356 * * * 5514 * * 1543 * * * * * * * * * 683 * * 18 12 * 6963 * * * * 4982 0 0 G 19 1396 5044 * * * 1564 * 5566 * 3156 * 6162 * * * 5499 4745 4476 * * 19 0 * * * * 0 * 4984 0 1000 V 20 6784 5043 * * 3664 * * 1506 * 3464 4571 * * * * * * 1333 * * 20 17 6398 * 1000 1000 * * 4980 1000 0 Y 21 4685 7003 * * 3196 * * 5824 6123 883 5122 * * * * 6233 * 5803 3848 2829 21 0 * * * * * * 4980 0 0 R 22 * * * * * 180 * * 5462 * * * * 5482 3787 * * * * * 22 0 * * * * * * 4982 0 0 L 23 3626 * * * 3864 * * 3171 * 866 4195 * * * * * * 3035 * 6158 23 22 * 6025 * * * * 4982 0 0 I 24 1346 * * * * 5451 * 5162 * * * 6096 * * * 2236 1704 5505 * * 24 0 * * * * 0 * 4974 0 1000 M 25 * * * * 1038 * * * * * 3122 * * * * 5134 * 5354 * 1534 25 0 * * * * * * 4982 0 0 K 26 5120 * * * * * * * 172 * * 5356 * * 4081 * * * * * 26 15 6553 * 1000 1000 * * 4992 1000 0 S 27 2534 * 6395 2757 * 3224 * * 3639 * * 7153 1823 5024 7350 3251 6234 * 6177 5539 27 0 * * * * * * 4993 0 0 N 28 * * 2155 3891 * 2095 6304 * 6711 * * 1222 * * 6514 * * * * 6395 28 0 * * * * * * 4993 0 0 S 29 4742 4535 * * * * * 3413 * * * * 5490 * * 2394 1417 2067 * * 29 0 * * * * * * 5009 0 0 D 30 3894 * 987 4648 * 3654 6237 6183 5089 * * 4139 3658 * 4917 3910 5891 * * * 30 0 * * * * * * 5009 0 0 N 31 * * 549 4259 * * * 5144 * * * 2839 * * 5788 5297 4634 6309 * * 31 0 * * * * * * 5009 0 0 F 32 4997 5387 5654 * 3092 * * 2860 * 2023 3635 * * * * * 2772 2715 6035 5080 32 0 * * * * * * 5009 0 0 R 33 * 5990 5587 4852 * * 6315 6345 3937 5299 6201 * * * 322 * * * * * 33 0 * * * * * * 5148 0 0 E 34 4531 * 3485 1184 * 5056 5614 * 6201 5629 * 2365 * 4086 5168 4543 * * * 5702 34 0 * * * * * * 5148 0 0 S 35 3276 * * * * * * * * * * 5990 * * * 405 2992 * * * 35 0 * * * * * * 5148 0 0 A 36 3679 * * * 5430 5082 6833 6760 3880 4103 * * 907 4848 5524 3259 5340 7352 * * 36 0 * * * * * * 5148 0 0 I 37 1503 6735 * * 6299 4047 * 2959 * 6257 7103 * 6761 * * 2368 3997 2837 * 6610 37 0 * * * * * * 5148 0 0 K 38 5270 * * 5857 4247 7068 6315 2938 4088 1794 3777 * 6001 4458 4502 * * 2372 * 4833 38 0 * * * * * * 5148 0 0 D 39 3410 5300 2887 2527 * 4237 5362 4782 2588 4518 * 5115 4333 6984 5142 4253 4474 * 6584 5283 39 0 * * * * * * 5147 0 0 V 40 * * * * 4608 * * 1513 * 1718 5038 6870 * * * * 6573 1969 * * 40 0 * * * * * * 5147 0 0 I 41 2451 5335 * * 5864 * * 1449 5693 4371 3131 * * * 5937 6546 6254 2740 * 4744 41 0 * * * * * * 5147 0 0 D 42 5252 * 3199 2207 * 6098 5856 6681 2468 * 5911 2973 4679 4382 2829 6032 5428 * * 5988 42 0 * * * * * * 5146 0 0 I 43 3264 * 5609 2657 7162 4216 4227 3765 3762 2747 5225 5054 * 4291 3316 4611 5295 6732 6930 6149 43 0 * * * * * * 5146 0 0 L 44 6482 * * * 4847 * * 3341 * 309 6169 * * * * * * 4872 * * 44 21 6118 * 0 * * * 5146 1000 0 K 45 4287 6762 5326 3448 * * 7099 3649 2235 2341 4644 6616 * 4363 4029 4393 5220 4202 5213 6571 45 18 * 6347 * * * * 5146 0 0 S 46 2842 * 3825 2624 6454 3135 * 4880 3531 4728 * 4394 * 3639 3204 3565 5416 * * * 46 63 4851 6938 848 1170 0 * 5131 1804 1000 K 47 3508 * 4067 3141 5251 * 5378 * 2242 4446 5806 3731 * 4101 3114 5123 5114 5481 6176 3821 47 0 * * * * 0 * 5147 0 1000 D 48 5607 * 4095 * 5939 461 * * 5571 5245 * 5461 4994 5381 * 5625 * 6618 * 5489 48 29 6963 6398 0 * * * 5146 1000 0 I 49 1772 5839 * 6747 4007 4763 * 3353 4478 4522 4680 6222 5665 * 6294 5298 5399 2566 * 3440 49 0 * * * * 0 * 5154 0 1461 K 50 5162 * 3123 2152 * * 4765 4402 2545 * * 3503 * 3523 4485 7072 3200 4875 * 7258 50 27 5779 * 467 1855 * * 5146 1594 0 I 51 5432 * * * * * * 2112 * 3249 * * 6486 * * * 5502 753 * 6170 51 0 * * * * * * 5146 0 0 I 52 4795 6957 4365 * * * 6883 2751 3147 3250 * 5466 * 4366 3264 3450 3386 3226 6301 4311 52 0 * * * * * * 5222 0 0 I 53 2449 4998 * * * 4357 6571 2056 * 3469 * * * * * * 5283 1766 * 3722 53 0 * * * * * * 5174 0 0 Y 54 6728 7070 * * 3118 * 2191 * * * * 4859 * * * 5709 4650 3569 6048 1132 54 0 * * * * * * 5174 0 0 E 55 * * 222 2810 * * * * * * * * * * * * * * * * 55 9 7262 * 3700 115 * * 5174 1000 0 P 56 * * 5531 5494 * * * * * * * 6787 149 7051 6662 6965 * 6561 * 6735 56 114 3845 7225 2223 348 * * 5174 3114 0 M 57 4460 * * 5606 3629 * 4155 4693 3576 2420 4117 2908 * 4867 * * 4638 3666 4879 3190 57 87 4095 * 270 2552 * 0 5394 2674 1000 L 58 2684 * * 6378 5458 4709 * 2209 5190 3384 5357 * * * * * 5825 1359 * * 58 46 5538 6631 1408 683 * 0 5809 1644 1000 N 59 3985 * 2892 2273 * * 6157 * 2804 6685 7197 2760 4196 4810 4397 3516 4619 6956 * * 59 98 4469 5597 2138 372 * 0 5697 2395 1388 K 60 4068 * 3385 2515 * 3636 6525 6551 2318 5765 * 3443 4395 3787 * 3571 6570 4567 * * 60 298 4531 2804 1697 532 698 1382 5695 2234 2839 L 61 3522 5487 3690 3119 4194 5664 4129 4364 3257 3797 * 4873 4044 * 4029 4439 4225 4371 4735 * 61 79 4880 5717 2940 201 1033 968 5712 2175 4144 E 62 3381 * 2954 2264 5269 * 4304 5089 3222 4456 * 4736 3742 4227 4519 4828 5812 5124 * 5871 62 141 3986 5047 1683 538 1093 912 5767 2829 3795 S 63 6266 7091 4599 2645 5043 5233 5068 * 2917 4201 * 4378 5631 6400 3819 3062 4171 4292 5140 3330 63 86 5675 4705 3065 184 1303 750 6008 1592 3460 E 64 * * 6332 2814 2431 6104 4991 3161 4938 2121 4566 6285 6311 6326 4726 * 4791 5220 * 4088 64 18 6349 * 1000 1000 1497 631 6105 1000 3432 D 65 3897 * 2043 4175 2738 4047 * * 4077 4672 4546 5674 4543 * 4978 4900 * 4777 5411 3389 65 156 3912 4796 2715 238 2307 326 6113 3078 2596 Q 66 2988 * 6381 4810 * 1287 6407 * 4255 6784 * 2942 * 4695 4500 3567 5166 5787 * * 66 64 6049 5156 1585 585 2844 216 6058 1000 2909 S 67 3279 5820 * 4401 4903 * 4009 2773 5760 4329 5007 3680 6014 * * 3890 6023 2151 6084 3745 67 31 6572 6568 2585 263 2350 315 5988 1000 3158 V 68 4600 * 5283 2578 * * 5012 4841 2775 3466 6405 4759 3489 5181 2983 4151 3568 5029 * * 68 79 4232 * 3358 148 2890 209 6044 2309 3020 L 69 6669 * 5817 * 3179 * * 3965 6365 1427 4428 6365 4390 5067 5142 6114 6495 2665 4994 4843 69 44 5070 * 570 1616 1828 477 6044 1642 2951 V 70 4306 4541 6435 3490 6816 * * 2857 5177 2554 5360 4978 * 4825 6403 5370 3363 2130 * 6941 70 35 * 5368 * * 1198 826 6050 0 2514 N 71 3321 * 3125 3201 * * 5229 5165 3005 5403 * 2988 4830 6201 3833 3251 3213 * * 5968 71 39 5213 * 597 1561 0 * 6075 1558 2393 D 72 5203 * 1690 4049 * 7212 * * 4954 5457 * 2783 4364 * * 2045 3425 * * 6438 72 0 * * * * * * 6080 0 0 L 73 4529 6081 * 4414 3195 * * 2919 4470 1214 4872 * 4673 * 6695 5577 5461 5303 * 5298 73 72 6440 4759 0 * * * 6085 1000 0 E 74 3300 * 2502 1408 * * 6338 * 4091 6701 * 3678 4690 4575 * 4961 * * * 3766 74 39 6178 6262 0 * 1574 590 5979 1000 1994 N 75 3759 * 2971 1575 * 6182 5214 4709 4656 3798 * 4759 * 4478 6023 3607 3843 5404 * * 75 33 * 5449 * * * 0 5965 0 2156 F 76 1456 4415 * 6286 2666 * 4689 5238 * 3055 4991 * 5965 * * 5818 4583 3173 * 6074 76 25 * 5841 * * 703 1375 6227 0 2826 K 77 4230 5868 5696 4857 * * * 2485 3093 1789 * * * * 5136 4482 4346 2703 * 6112 77 21 6080 * 0 * 617 1523 6203 1000 2109 K 78 2995 * 2979 2936 * 4725 * * 2112 * 5171 3809 5052 5179 3038 4281 * 5798 * * 78 0 * * * * 0 * 5951 0 1000 Q 79 5315 * 2950 3802 * 2400 6473 5088 3222 5186 5016 3786 6231 3521 5663 4490 6349 5331 5098 3745 79 0 * * * * * * 5981 0 0 A 80 1159 5410 4941 * 5329 6266 * 5006 * * * 6301 * * * 1807 6378 3665 * 4731 80 0 * * * * * * 5981 0 0 N 81 5279 4941 529 3253 * * * * * * * 4822 * 4911 * 5760 * 4135 * * 81 119 3654 * 660 1446 * * 5981 2733 0 I 82 2060 4699 * * * * * 2187 * 2307 * * * * * * 5769 1887 * 6476 82 38 5261 * 0 * * * 5981 1553 0 I 83 6417 * * * 6218 6201 * 1092 * 2959 * * * * * * * 1515 * 6180 83 23 5994 * 0 * * * 5982 1000 0 V 84 5214 * * * * * * 1587 * 3097 5807 * * * * * * 984 * * 84 0 * * * * * * 5975 0 0 T 85 1769 * * * 4416 * * 2136 * 3717 * * * * * 4283 2466 3015 * * 85 62 4582 * 1358 713 * * 5649 1562 0 N 86 3993 5016 5463 * * 3551 5437 5600 * 4434 * 1792 * 4878 5133 * 1734 4148 * * 86 0 * * * * * * 5592 0 0 R 87 2967 * 5336 2080 5377 * 3416 * 4793 * * 4040 * 4304 1932 * 4065 5390 * * 87 0 * * * * * * 5586 0 0 Y 88 3877 * 4897 3840 * 5572 3945 5286 2900 4493 3315 * 5270 * 4938 4410 * * 1912 3905 88 31 5551 * 2000 415 * * 5586 1000 0 D 89 5150 5523 2254 4024 5377 5113 2952 5313 5899 4119 * 3288 4355 5457 * 3667 4418 4881 4691 5314 89 68 5457 5416 1000 1000 * * 5586 1000 0 N 90 3785 * 2737 2500 5165 * * 5091 3323 * 5395 5630 2597 3835 2973 * * 4759 * * 90 28 5706 * 2322 322 0 * 5586 1000 1000 E 91 5274 * 2573 1386 2093 5132 5379 * * * * 4162 5510 4089 * * * * * * 91 47 4967 * 1000 1000 * * 5570 1000 0 L 92 * * * * 1950 * * 2742 3839 1766 * 5333 * 5387 5239 * 5153 * * 3006 92 0 * * * * * * 5571 0 0 Q 93 5292 * 3144 3109 * * * * 2032 * * 4092 * 3336 1772 4313 * * * * 93 58 4672 * 2322 322 * * 5558 1000 0 D 94 3047 * 2160 3592 * 4882 4961 * 1958 4130 * 3870 4265 5508 * 4343 * * * * 94 0 * * * * * * 5469 0 0 V 95 * 5090 3660 * 3876 * * 1932 * 1921 * * * * * 4773 * 2128 * 4970 95 0 * * * * * * 5469 0 0 K 96 2088 4679 * 4017 3831 * * 4971 2163 5372 6486 3246 * 5518 * 3930 * 4297 4069 * 96 50 * 4864 * * * * 5470 0 0 N 97 4775 * 2352 2195 * 4916 3919 5230 4533 3798 * 3664 4874 4954 * 3443 3815 * * * 97 42 * 5128 * * 0 * 5376 0 1000 K 98 4588 * 3521 3133 * * * * 840 4460 4672 * * * 4960 * * 4752 * 4478 98 147 3371 * 2618 257 0 * 5378 1659 1000 V 99 * * 4662 * 4284 * * 1878 4771 2775 4639 * * * * * * 1271 * * 99 73 * 4344 * * * * 5310 0 0 Y 100 * * 2573 4246 2471 * 4289 * * * * * 4312 * 3197 * * * * 1365 100 0 * * * * 0 * 5126 0 1000 S 101 * * * * * 4250 * * * * * 4230 4088 * * 1837 987 4301 * * 101 72 4365 * 2000 415 * * 5126 1000 0 R 102 3197 * 4165 * * * * * 3062 * * * * * 483 * * * * * 102 0 * * * * * * 4869 0 0 D 103 * * 967 * * 4347 * 4017 4096 3996 * 3091 3848 * * * * 3847 * * 103 0 * * * * * * 4689 0 0 I 104 4039 * * * 3848 * 4074 779 * 2595 * * * * * * * 4010 * * 104 0 * * * * * * 4689 0 0 F 105 * * * * 597 * * * * 4060 * * * * * 4620 * * 2475 4095 105 0 * * * * * * 4648 0 0 G 106 * * * * * 1468 * 3879 4428 * * 2810 * 4082 3469 2847 * 3426 * * 106 0 * * * * * * 4096 0 0 R 107 3429 3670 * * * * * 2625 * * * 3983 * * 2435 3318 2867 * * 2466 107 0 * * * * * * 3845 0 0 D 108 * * 428 3700 * * * * * * * 2474 * * * * * * * * 108 0 * * 0 * * * 3276 0 0 //