HHsearch 1.5 NAME d1cwva3 FAM FILE d1cwva3 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1cwva3.a3m DATE Mon Mar 8 16:29:56 2010 LENG 103 match states, 103 columns in multiple alignment FILT 113 out of 296 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.3 EVD 0.4616 0.2684 SEQ >ss_dssp CCSSCCTTTCEEEESCSEEETTSCCCEEEEEECBCTTSCBCCSCCSEEEEEEESCCEECCCEECSSCEEEEEECSSCEEEEEEEEETTEECGGGCEEEEE ECC >sa_dssp ECEEBCDEEBDBDCECDDADBDCEDDADACACACAEEEDCBEDBEDBDBCDEECEBECCEDDDDEEBBCBDACBEDECDACABACBEEDDBDEBDDDABA DEE >ss_pred CCCCCCCCEEEEEECCCCEEECCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCEEECCCCEEEEE EEC >ss_conf 9877885414999757735636853169999999577972279715899627776442333268888999998255212999999999970133306999 739 >Consensus xxxxPdxxxSxltvxxxxixADGxxxxtltxtvxDxxGNPvxgxxvxxxxxxxxxxxxxxxtxxxGxytatltstxaGxxxitaxvngxxlaxxxxxvxx xpx >d1cwva3 ADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNSVGDVTITPQVDTLILSTLQKKISL FPV >UniRef50_C9Q4J6(560-659:800) Invasin n=1 Tax=Vibrio sp. RC341 RepID=C9Q4J6_9VIBR E=6e-12 s/c=0.72 id=21% cov=95% -----DPNLSTLTSSVDDIVVNNLEKATITLLLKDVYGNPISGQNVIITPSLVSSVKVTPVVDKgNGEYSIDLTASavSTGSVSFDIEVNDVAFPVTTVS VGLLP- >UniRef50_C4RYB3(473-576:945) RTX toxin and Ca2+-binding protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RYB3_YERBE E=9e-07 s/c=0.53 id=21% cov=86% ----PATISGTWTPAASTKPADGNSAVLLTLTLKDAAGNPLIGQANNITLKKNTlggsgsePTLSALTETGPGIYQTTATaGTNFGVLTLTPEIQGTQLA ----------- >UniRef50_UPI0001C41B4C(725-808:2575) adhesin-like protein n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B4C E=5e-05 s/c=0.58 id=17% cov=23% -----------------------------------------------------------------------------GNFNVKITFNTTGYAITSKTVSV --- >UniRef50_B7MMM3(745-838:1746) Putative invasin/intimin protein n=10 Tax=Enterobacteriaceae RepID=B7MMM3_ECO45 E=0.0001 s/c=0.51 id=23% cov=21% ---------ATLSATNNDVYADKKTFNTLT---------------------------------------------------------------------- --- >UniRef50_UPI0001789507(527-618:1074) S-layer domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789507 E=8e-09 s/c=0.67 id=15% cov=90% ----PHPAQSELTATPSMSVVGSADPVVLRLQIRDADGNELNRSGGKAAFTSSLGTVSEPVETSYGVYEAELRSDTAGIANIGVTLDGKPFDVSAK---- --- >UniRef50_B6XDB5(1106-1194:2521) Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XDB5_9ENTR E=2e-06 s/c=0.60 id=21% cov=74% -------------ITPTNKAPQAGETPTLTVTLTDSNGNPVNDIQQLEVTIAGTTHTLPATQDPDGSYTVTLPAQHSGKQDIQVSVNG------------ --- >UniRef50_C5PT79(409-506:1087) Putative uncharacterized protein (Fragment) n=5 Tax=Sphingobacterium spiritivorum RepID=C5PT79_9SPHI E=9e-08 s/c=0.59 id=20% cov=93% -----DYSKSNLAVTKDNAIANGTDYNEFTATIVDAFSNPITNTAVAFGITNPDGTTGTQtiNTDANGKSVARVTSTKAGTVTVDAQVANRSIANSPAKA TF--- >UniRef50_UPI0001C34895(586-672:722) putative invasin n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34895 E=5e-05 s/c=0.56 id=21% cov=33% ----------SVDIIQNNAVADGISKNKIKLHIVNNSRQSIAG--------------------------------------------------------- --- >UniRef50_C0E3Z8(285-368:720) Putative uncharacterized protein n=2 Tax=Corynebacterium matruchotii RepID=C0E3Z8_9CORY E=0.0005 s/c=0.54 id=19% cov=26% ------------------------------------------------------------VTNDQGVFTQEFTTEQPGQLAATAAV-------------- --- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 907 * * * * * * * * * * * * * * 1100 * * * * 1 0 * * * * * * 2657 0 0 D 2 * * 1094 * * * * * 1801 * * * * * * * 2031 * * * 2 0 * * * * * * 2657 0 0 P 3 * * * * * * * * * * * * 329 * * 2294 * * * * 3 0 * * * * * * 3273 0 0 I 4 * * * * * * * 1883 * 3169 3703 * * 3454 * * 2024 2295 * * 4 110 3774 * 0 * * * 4380 1000 0 P 5 * * * * * * * * * 3431 * * 140 * * * * * * * 5 0 * * * * * * 5415 0 0 D 6 4342 * 747 * * * 4031 * 4883 * * 4134 4806 * * 3686 4729 4273 * * 6 0 * * * * * * 6090 0 0 A 7 1611 * * 3970 * 5246 * 3846 * * * 5757 2429 3773 4939 5469 5249 2947 * 5349 7 0 * * * * * * 6248 0 0 G 8 2149 * 3841 5316 5036 3393 5295 4562 4091 4779 * 5596 * 3936 * 2319 3257 * * * 8 0 * * * * * * 6258 0 0 R 9 4895 * 5851 4786 * * 5864 5420 1937 3728 * 2465 * 3021 3442 5730 3723 5179 * 5870 9 0 * * * * * * 6283 0 0 S 10 3551 * * 5469 * 3827 * 5690 * * * * * * * 430 4410 6249 * * 10 49 4892 * 1177 842 * * 6379 2103 0 S 11 4688 * 3801 4505 * 5485 * 4177 5722 3977 * 3825 * 4751 * 2157 1716 4833 * 6166 11 0 * * * * * * 6555 0 0 F 12 6504 * * * 2412 * * 3704 * 834 6124 * * * * * * 2881 6239 * 12 0 * * * * * * 6615 0 0 T 13 3631 * 4345 3612 * 5377 6593 5320 4164 * * 3811 * 3719 * 3772 1453 3515 * * 13 0 * * * * * * 6615 0 0 V 14 2186 * 6269 * * * * 2693 * 3569 7167 5615 3998 * * 3711 4050 1730 * * 14 0 * * * * * * 7165 0 0 S 15 4468 * 2282 4860 6881 7255 6304 4739 5223 * * 3055 5280 5865 * 2138 2538 4401 * 6295 15 18 6314 * 3000 193 * * 7192 1000 0 T 16 4264 * 5564 6233 * * 5073 6767 2554 * * 5086 1432 4884 3503 4438 3783 3981 * * 16 47 4975 * 0 * * * 7192 1628 0 P 17 4174 * 3094 4223 * 4038 6226 6195 5332 5142 6063 3324 3164 4740 6322 2421 2707 * * 5897 17 0 * * * * * * 6958 0 0 D 18 4976 * 4075 4458 * 3803 6624 4461 6533 5620 5002 2722 6324 4883 * 2165 2320 4646 * 6305 18 28 5722 * 506 1756 * * 6958 1702 0 I 19 2931 * * * 6584 * * 1430 4659 2950 * 6086 * 6346 * 4209 4779 2410 * 6311 19 0 * * * * * * 7057 0 0 L 20 4319 * 5141 5596 6200 6138 * 2973 5233 2466 5038 4797 4096 * 6777 4607 3221 1966 * * 20 0 * * * * * * 7084 0 0 A 21 395 * 6854 * * 5210 * 6231 * * * * 4235 * * 4589 5131 3889 * * 21 55 * 4747 * * * * 7043 0 0 D 22 6296 * 725 * * 5192 * * * * * 1968 * 5946 * 4845 4766 6442 * * 22 43 * 5086 * * 373 2133 6957 0 2241 G 23 4334 * 5556 * 5775 463 * * 5303 * * 3254 * * * 5845 5624 * * 5848 23 0 * * * * 417 1993 6954 0 2599 T 24 3686 * 5796 5664 * 4245 6419 4018 2145 5811 * 4082 * 3991 5393 3176 3122 2802 * * 24 0 * * * * 0 * 6975 0 1000 M 25 2994 * 1818 2900 * 5283 5907 6378 6354 * 4970 5318 * 3672 * 2714 3516 * * 6052 25 14 6647 * 0 * * * 6979 1000 0 S 26 3221 * * 4342 4934 5495 * * 3138 5511 * 5877 3618 4428 5597 2275 2199 4273 * 6475 26 0 * * * * * * 6979 0 0 S 27 1838 * 6856 * * 6052 6682 3784 5497 6356 * 2749 5976 6489 7219 2665 3211 2923 * * 27 0 * * * * * * 6979 0 0 T 28 6858 * * 4342 * * 6357 5163 4112 4147 5688 5367 * 4427 4731 3551 1174 2930 * * 28 0 * * * * * * 6976 0 0 L 29 5584 * * * 4868 6354 * 1917 * 1123 5087 * * * * * * 3199 * 3828 29 0 * * * * * * 6976 0 0 S 30 6216 * 5748 3658 * * 5901 6685 3197 5911 * 6485 * 4578 3831 4005 894 6254 * * 30 0 * * * * * * 6976 0 0 F 31 1987 * * * 2848 * * 4028 * 1876 * * * * * 6360 6254 2233 * 4750 31 22 6053 * 1585 585 * * 6976 1000 0 V 32 * * 4842 * * * 5031 3558 3216 5969 6504 4451 * 4049 4062 6095 1244 3156 * * 32 0 * * * * * * 6976 0 0 P 33 2968 * * * * * * 2665 * 1503 * * 6319 * * * * 1518 * * 33 0 * * * * * * 6976 0 0 V 34 5574 * * 4172 * * 4856 6685 2016 5084 4663 6737 * 3209 2349 6861 2668 3794 * 6468 34 0 * * * * * * 6976 0 0 D 35 * * 192 * * * 6468 * * * * 3957 * 5600 * * 6407 * * 5931 35 14 6685 * 0 * * * 6976 1000 0 K 36 1975 * 3504 4700 * 4899 * 4112 2371 5931 * 4282 6538 4897 6619 2944 4455 4776 * * 36 0 * * * * * * 6976 0 0 N 37 4015 * 3327 4152 3001 * 4053 6080 4980 * * 2042 * 4393 5915 3521 5501 * 5508 3153 37 0 * * * * * * 6909 0 0 G 38 6578 * 4804 * * 546 4737 * 5793 * * 2621 * 5756 6734 5444 * * * * 38 15 6598 * 2322 322 * * 6909 1000 0 H 39 4735 * 6214 6652 6336 6312 3763 * 5519 4525 * 641 * 3684 6594 5918 5546 7024 * * 39 19 6273 * 1000 1000 * * 6909 1000 0 F 40 3371 * 6285 5982 6379 6463 * 3957 6849 4484 * * 611 * 6287 6839 4785 6599 * 6542 40 15 * 6574 * * * * 7154 0 0 I 41 5228 * 6326 * * * * 2053 * 1784 5625 * * * * * * 1340 * 6140 41 0 * * * * 0 * 7142 0 1000 S 42 2507 * 3473 3885 * 5902 * 5054 3321 6376 * 4511 3178 * 5243 2726 2835 4823 * * 42 25 6524 7350 0 * * * 7154 1000 0 G 43 4120 * 3037 6548 * 875 6740 * * * * 2503 * * 6230 4798 6179 5984 * * 43 8 * 7512 * * 0 * 6647 0 1000 M 44 3693 * * 5103 6720 4451 * 3274 4349 2794 4033 5352 * 2350 5024 4399 4872 2982 * 5564 44 0 * * * * 0 * 6614 0 1000 Q 45 2908 * 3462 3495 * 4000 6376 5343 4357 5497 * 3794 3975 3925 6169 3956 2075 * * * 45 52 5188 6957 1774 499 * * 6603 2203 0 G 46 4931 * 3367 * * 3613 6161 3287 * 4605 * 3812 * 5500 6548 6602 5749 1005 * * 46 128 3562 * 1879 458 0 * 6597 3339 1000 L 47 3758 * 5039 4261 * * 6543 3750 4536 2600 * 3670 6420 3994 3580 3678 2600 4048 * 6605 47 0 * * * * * * 6585 0 0 S 48 3415 * * 4255 2132 5195 6971 2842 5605 3456 6213 * * 6712 * 4152 4705 3416 3103 6427 48 86 4114 * 850 1167 * * 6557 3030 0 F 49 3813 * 4698 3688 3382 5397 5542 5631 5437 3990 4843 5545 * 6069 5502 2676 2322 3188 * 7383 49 56 5080 6870 1076 928 * * 6559 1773 0 T 50 3186 * * * 4567 5571 * 4335 * 3268 6560 3655 6302 6722 * 2658 2187 2447 * * 50 83 4154 * 1765 503 0 * 6576 3030 1000 Q 51 4203 * 2618 4537 6383 4111 6303 4446 6642 6742 * 3521 3822 3858 6186 2307 2963 5557 * * 51 57 4698 * 829 1194 * * 6576 2511 0 N 52 4300 * 5059 4800 * 3078 * 4303 5623 3846 * 2065 5388 4433 * 2451 3167 5568 * * 52 19 6252 * 1000 1000 * * 6580 1000 0 G 53 4763 * 4227 4928 * 1289 5271 5071 4849 4432 5909 3336 4912 6410 * 3477 4355 5505 * 6705 53 43 5103 * 2979 196 * * 6580 2282 0 V 54 2681 * 5335 * 5004 4158 5455 4237 4104 3646 6649 4750 5334 3903 * 3002 3226 2854 * 6731 54 70 4762 6533 353 2203 * * 6580 2297 0 P 55 3665 * 3519 5787 4652 2801 * 6737 4045 3903 * 4059 3312 5533 * 3564 3068 3189 * * 55 58 4664 * 2510 278 0 * 6523 2975 1000 V 56 4240 * * 6233 6391 4688 5033 2769 * 3206 5597 5080 4898 5360 * 3496 2264 2377 * * 56 71 4386 * 1136 876 * * 6580 3007 0 S 57 3671 * 4730 5239 5668 6721 6450 3844 4106 4743 5767 3746 4857 4096 5052 3040 2367 3056 * * 57 34 5420 * 3526 131 * * 6537 1759 0 I 58 3650 * 5350 5200 4006 3873 * 3417 6225 2780 6106 6446 3831 5021 * 2450 3472 4520 * 4581 58 16 6541 * 2000 415 * * 6498 1000 0 S 59 3851 * 4509 4205 * 5478 5580 5095 4410 5051 * 5504 4035 4907 6445 1820 2137 4493 * * 59 42 5110 * 2216 350 * * 6498 2280 0 P 60 2688 * 4824 5484 5469 3160 * 4861 4034 4308 5667 5465 2804 5209 4822 3899 3324 3440 * * 60 84 4151 * 1707 528 * * 6498 3254 0 I 61 4827 * * 4471 5670 * * 3333 4451 4405 4740 5319 4820 5143 4959 4517 1906 2343 4576 * 61 79 4226 * 1349 720 * * 6515 3002 0 T 62 * * 3862 3233 * * * * 5771 6067 * 6621 * 4573 5356 3423 772 5374 * 6342 62 60 4626 * 1686 537 * * 6520 2119 0 E 63 5676 * 1524 2872 * 4719 5270 * 4741 * * 2272 6067 4831 * 4271 4080 5216 * * 63 92 4014 * 1217 811 * * 6520 3095 0 Q 64 2452 * 4127 3617 5983 4335 4865 * 3456 6742 6365 3393 3750 3702 * 3289 3867 4930 5951 * 64 112 3744 * 795 1239 * * 6520 3287 0 P 65 3727 * 2273 5706 * 4572 4853 * 5119 * * 2074 2903 3539 6238 4154 5857 * * 4349 65 27 5764 * 0 * * * 6520 1598 0 D 66 6411 * 5403 * * 85 * * * * * 5523 * * * * * * * * 66 0 * * * * * * 6520 0 0 S 67 5909 * 5321 2943 * 4613 5607 2712 4476 6731 6328 5441 * 4896 5405 3549 2699 2133 * * 67 49 4915 * 1049 953 * * 6523 2044 0 Y 68 2040 7079 * 6593 5719 * * 4731 * 5424 * * * * * 5058 5053 4198 * 877 68 0 * * * * * * 6523 0 0 T 69 5634 * * 3471 7005 6510 6563 3826 4203 6534 * 6368 * 3264 5323 3222 1185 5353 * 6377 69 15 6593 * 0 * * * 6523 1000 0 A 70 1156 * * * 5532 6675 * 3864 * 5247 4725 6450 * 5005 * 4890 3569 2362 * 4968 70 0 * * * * * * 6523 0 0 T 71 4617 * 5293 3603 * * 6376 5714 4337 7268 6791 3712 7032 3904 5617 2767 1321 5601 * 5923 71 0 * * * * * * 6523 0 0 V 72 5657 * * * 3990 * * 2382 * 1334 5491 * * * * * * 1795 * 5772 72 0 * * * * * * 6523 0 0 V 73 4819 * * * * * 5601 4883 3503 * 6580 6113 5555 5204 4818 3284 840 4271 * * 73 165 3213 * 0 * * * 6523 3404 0 G 74 3435 * 5076 * * 1386 * * * 7536 * 4326 * * * 1216 6693 * * * 74 20 6200 * 0 * * * 6523 1517 0 N 75 6670 * 4614 5424 4798 5101 5581 * 5483 4480 * 3542 * 4384 6251 3430 907 * * * 75 18 6347 * 1000 1000 * * 6523 1000 0 S 76 4260 * 6251 4636 6329 5313 5031 5439 1969 4206 6723 4853 * 2710 4551 4459 2667 4290 * * 76 0 * * * * * * 6523 0 0 V 77 1146 * * 4693 5724 5068 * 7556 4970 7536 6286 6634 3409 4830 * 3091 3673 3831 * * 77 14 6733 * 0 * * * 6523 1000 0 G 78 6470 * 6178 4252 6756 216 * 7534 6655 * * * * 5397 * 6268 * * * * 78 0 * * * * * * 6633 0 0 D 79 5523 * 3932 3774 * * * 3108 3194 5058 * 3810 * 4291 6460 2768 2029 4089 * * 79 0 * * * * * * 6633 0 0 V 80 1849 * 5833 * 4277 5376 4592 4559 4806 5032 * * * 5571 * 3817 3499 1944 * 4695 80 0 * * * * * * 6633 0 0 T 81 5136 * 3916 4913 * * * 3878 5768 5329 6505 3213 * 4020 4330 3466 1537 3743 * 5584 81 0 * * * * * * 6633 0 0 I 82 6671 * * * 4069 * * 1523 * 2318 * * * * * * * 1388 * * 82 0 * * * * * * 6633 0 0 T 83 3665 * 5454 6119 * 4784 * 4337 5431 * 4602 5237 * 5148 5678 2661 1033 6298 * * 83 0 * * * * * * 6663 0 0 P 84 1019 * * * 6260 5411 * 5381 * 4736 * * 2158 * * 6214 6335 2658 * * 84 18 6351 * 0 * * * 6478 1000 0 Q 85 5169 * 5205 4120 6414 * 6632 * 4508 5910 4399 * * 2375 3991 2116 2050 5057 * * 85 0 * * * * * * 6478 0 0 V 86 5125 * * * 6499 * * 1693 * 2320 * * * 5517 * 6035 6031 1328 * * 86 25 5871 * 1181 839 * * 6423 1671 0 D 87 4283 * 2590 4649 * 2389 * * 6426 * * 1268 6129 4321 * 4713 5481 * * * 87 18 * 6338 * * * * 6385 0 0 T 88 5329 * 4684 * * 888 * * 6923 * * 2164 * * * 3296 3991 * * * 88 0 * * * * * 0 6373 0 1000 L 89 4420 * 4265 3743 * * 6507 3331 3420 3861 5888 4664 * 4418 4908 3727 2585 2512 * * 89 42 * 5135 * * 0 * 6284 0 1000 I 90 3815 * 3378 5945 * 7150 5655 3425 * 5866 7116 4362 3483 6221 6195 2114 2295 3788 * * 90 0 * * * * 968 1033 6224 0 1668 L 91 4210 * * * 3975 * * 2811 4791 1234 4852 * * 3594 * 6530 6270 3135 * 5404 91 0 * * * * * 0 6214 0 1000 S 92 1398 * 3825 5421 * 5914 * * 4658 * * 4537 4868 * * 1759 3616 5959 * * 92 0 * * * * 0 * 6176 0 1000 T 93 4313 * 3496 5221 * 3193 * 3892 4398 4421 4397 4209 5415 5335 * 3286 2207 3403 * * 93 0 * * * * * * 5925 0 0 L 94 2937 * 3426 3998 * * * 5240 * 1997 * * * 5308 * 2998 2919 2697 * * 94 0 * * * * * * 5750 0 0 Q 95 3798 * 4329 * * * * * 3009 * * 4591 2397 2110 * 3519 2901 3838 * * 95 0 * * * * * * 5549 0 0 K 96 2736 * * * * * * 3710 2188 4460 * * 4861 4824 * * 3304 1567 * * 96 0 * * * * * * 5418 0 0 K 97 * * 3522 * * * * * 1797 * * 5394 * * 2737 1728 3253 4486 * * 97 0 * * * * * * 5181 0 0 I 98 4331 * * * 3180 * * 2901 * 2235 * * * * * * * 1018 * * 98 0 * * * * * * 5181 0 0 S 99 3982 * * * * 4179 * * * 4520 * 2827 * 3104 * 2669 1240 * * * 99 0 * * * * * * 5068 0 0 L 100 * * * * 1881 * * 4080 * 927 * * * * * * * 2804 * * 100 0 * * * * * * 4835 0 0 F 101 2338 * * * 3264 * * 1957 * 2095 * * * * * * 3297 3256 * * 101 0 * * * * * * 3981 0 0 P 102 * * 3293 * * * * * * * * * 155 * * * * * * * 102 0 * * * * * * 3981 0 0 V 103 * * * * * * * * * * * * * * * * * 0 * * 103 0 * * 0 * * * 2226 0 0 //