HHsearch 1.5 NAME d1cwva2 FAM FILE d1cwva2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1cwva2.a3m DATE Mon Mar 8 16:27:56 2010 LENG 96 match states, 96 columns in multiple alignment FILT 109 out of 393 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4771 0.5938 SEQ >ss_dssp CBCGGGCEEEEESSEECTTSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEECCCEECSSSEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEEEC >sa_dssp EDBCEDBDBDBEDEDAECDCEDCADACADACBEEDDDDDECEBDBDCECDECDECDCDEEBCABBDACBEDEDDACADBDBEEDEBEBEDCDADBE >ss_pred CCCCCCEEEEECCCCEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEC >ss_conf 976530089976671885784018999999956437158974999973871000243487099999975664149999998682556665799979 >Consensus tvxxxxSxlxxxxxxixAdgxxxxtltxxvxDxxGnpvxgxxvxxxxxxxxxxxxttxxxGxxtxxltxtxxGxxxvtaxvxgxxxxxxxxtVtxT >d1cwva2 TIAADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFT >UniRef50_D1P141(1552-1645:2373) Putative LysM domain protein n=2 Tax=Providencia RepID=D1P141_9ENTR E=0.0002 s/c=0.50 id=24% cov=95% -LDVSKSSLNLTPSTVTAG--KPTTLKLVLKDQFGNPLVNQQTAIHVrkdkNHVVISPVTVVDDGVYQVSVSSEQADTAILSVDIGTQSL---PQTKTLT >UniRef50_C2LNI4(692-782:2323) Intimin/invasin n=7 Tax=Proteus RepID=C2LNI4_PROMI E=4e-08 s/c=0.65 id=20% cov=90% -----QQNFTITPPLSLADGKTEKTISLQVVDKQNNPIPATHVTLSADNQaqlKQTILTTDEQGKATTTMISKVAGTVTVRAKINDKMTHATT------ >UniRef50_Q8X8V7(1138-1238:2660) Uncharacterized protein yeeJ n=47 Tax=Bacteria RepID=YEEJ_ECO57 E=3e-07 s/c=0.56 id=25% cov=97% --SNAQVTLNIPAQQVVTNNSDSVQLTATVKDPSNHPVAGITVNFTMpqdvaanfTLENNGIAITQANGEAHVTLKGKKAGTHTVTATL-GNNNASDAQP VTF- >UniRef50_Q8X8V7(529-627:2660) Uncharacterized protein yeeJ n=47 Tax=Bacteria RepID=YEEJ_ECO57 E=2e-06 s/c=0.54 id=22% cov=100% TLSQKDSSVSLSSQTLSADSHSTATLTFIAHDAAGNPVIGLvlsTRHEGVQDITLSDWKDNGDGSYTQILtTGAMSGTLTLMPQLNGVDAAKAPAVVNI- >UniRef50_B2U5L0(518-620:1653) Intimin type beta n=1 Tax=Escherichia coli 53638 RepID=B2U5L0_ECOLX E=0.0002 s/c=0.45 id=25% cov=97% -IDPTISSLDPKNISLPADGQSQKKLTLKIKNRNGlfedinpddiNVLKTSEENFDVSS-KITRFSRQEAGIYTATLTaGTKSERFTITPMIYNIKLPPS TVTIS-- >UniRef50_UPI0001C41B9C(998-1092:1094) adhesin-like protein with cysteine protease domain n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B9C E=9e-06 s/c=0.54 id=21% cov=99% TVKVQTPKLTAPNKSYKVSAKTKS-LTASFKTANGKAVSGKKISFTVNGKTYSA-KTNSKGTATVNVSLNKKGTYSFTVKFAGdDTFATSSAKAKLT >UniRef50_C4UDV3(829-930:2487) Putative uncharacterized protein n=1 Tax=Yersinia aldovae ATCC 35236 RepID=C4UDV3_YERAL E=0.0002 s/c=0.46 id=19% cov=99% --SAQIALLPASKIKAAANDKDWITLTAKIVDAHNNPIKSEKIVWDAVSHqmTFSPTTkithTNDQGESEIQVASAQVGDASVSAQVvaNDLLINQDNQT LTFS >UniRef50_D1YVB6(303-392:396) Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1YVB6_METPS E=6e-05 s/c=0.54 id=21% cov=93% -----KARLSTDKATIKTTGK--ANIKVTAADCNGKAIEGATIELACTGATLepASGSADSQGAFTASFSSTTAGSYEVKATVKKSPYADGNANVTI- >UniRef50_C4UN28(540-632:842) Putative uncharacterized protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UN28_YERRU E=8e-12 s/c=0.77 id=23% cov=96% TVNAVISELITVTNNAWANGVATNSVKATVTDEQGSRLIDQVVNFSADNDAIISAtgTTDSNGEVLITLTNNTVGEAIVTASINNTELTTPTI----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 4345 0 0 I 2 3070 * * * * * * 1798 * 2491 5206 * * * * * * 1364 * * 2 0 * * * * * * 5779 0 0 A 3 4167 * 1490 * * * 5508 * 5536 * * 2427 * * * 1628 4825 * * * 3 0 * * * * * * 6165 0 0 A 4 1751 * * 4170 * 6044 * 4647 5454 * * 4909 3063 5447 * 2885 2935 3443 * 4811 4 0 * * * * * * 6184 0 0 D 5 2216 * 3908 5321 6006 3798 4604 5438 3466 4934 5541 6028 * 3830 * 2527 3286 4830 * * 5 0 * * * * * * 6265 0 0 K 6 4611 * 5720 5960 * * * 3973 1900 4369 5027 2384 5612 2743 4931 5567 3586 6080 * * 6 0 * * * * * * 6412 0 0 S 7 3351 * * * * 5099 * * * 5722 * 5764 4802 5921 * 558 4070 4495 * * 7 0 * * * * * * 6431 0 0 T 8 6159 * 3872 3208 * 6230 * 4684 4623 4069 * 3431 6197 6247 6049 2488 1719 4624 * * 8 0 * * * * * * 6525 0 0 L 9 5844 * * * 2473 * * 2392 6478 962 6167 * * * * * * 3762 * * 9 0 * * * * * * 6570 0 0 A 10 3259 * 4904 4976 * 4843 * 4033 3745 6479 * 4188 6599 5539 * 2891 1772 3027 * 6423 10 0 * * * * * * 6605 0 0 A 11 1531 * * * * 4950 * 3056 6568 3432 6514 * 3766 * * 4328 3582 2470 * * 11 0 * * * * * * 6605 0 0 V 12 4451 * 2394 4702 6651 * 6385 5723 4041 * * 3934 4958 5613 * 2075 2385 3997 * 6114 12 19 * 6258 * * * * 6624 0 0 P 13 5277 * 5957 * * 4870 * 5703 2301 * * 4120 1282 * 3970 3754 3980 4969 * * 13 0 * * * * * 0 6614 0 1000 T 14 4158 * 3229 4787 6745 4965 * 4929 4532 5270 6715 3133 3836 4541 6409 2443 2423 5628 * 5719 14 0 * * * * 0 * 6731 0 1000 S 15 4972 * 3736 4680 * 4728 * 5570 5655 6566 5596 2228 * 4790 * 2532 1749 6628 * 6136 15 37 5300 * 822 1203 * * 6731 2126 0 I 16 2358 * * * * 7032 5865 1372 6230 2711 6642 * * 5454 * 4634 * 3060 * 4851 16 0 * * * * * * 6731 0 0 I 17 4257 * 6979 4464 6890 5680 6560 2517 4652 3328 5668 5464 3182 * 5106 4889 4021 1961 6938 * 17 17 * 6452 * * * * 6773 0 0 A 18 353 * * * * 4543 * * * * 6289 6811 5482 6463 * 6469 5685 3506 * * 18 46 6457 5636 0 * * 0 6755 1000 1000 D 19 * * 991 * * 3609 * * * * * 1854 * 5219 * 4034 4743 * * 6271 19 101 6738 4094 2000 415 0 * 6733 1000 2371 G 20 3689 * 5007 * * 599 * * 6461 * * 2866 * * * 4721 6371 6409 * 5571 20 17 * 6445 * * * 0 6766 0 2950 L 21 4882 * 5403 5439 6067 5441 5422 3593 2420 4356 * 4323 * 3594 6350 2677 3117 3024 * * 21 16 * 6532 * * 0 * 6750 0 3276 M 22 3413 * 1673 2838 * 5103 6631 * 6450 * 4863 4759 * 4598 6463 2704 3005 * * * 22 31 5560 * 1627 564 * 0 6797 1718 1000 A 23 3734 * * 5201 6277 5511 7146 * 2951 4106 6619 5872 3577 3410 6641 2567 2217 4619 6952 5590 23 0 * * * * 0 * 6797 0 1000 S 24 2141 * 5849 * 6634 5204 6655 3816 5510 5788 * 3019 5379 5050 * 2442 3609 2698 * * 24 53 * 4794 * * * * 6809 0 0 T 25 5003 * 6658 5420 4131 6770 5925 4433 3762 4429 6663 4538 * 4810 5177 5134 1220 3151 * * 25 0 * * * * 0 * 6739 0 1962 I 26 4704 * * * 4665 6700 * 2151 * 1139 6008 * * * * * * 3119 6461 3452 26 0 * * * * * * 6795 0 0 T 27 6669 * 5664 3581 * * 6556 5241 3691 5156 * 6825 * 4294 5458 3461 934 4743 * 6617 27 0 * * * * * * 6795 0 0 L 28 1537 * * * 3352 5655 * 3692 * 2167 * * * * * * 6690 2277 * 5547 28 0 * * * * * * 6795 0 0 E 29 6226 * 5546 5075 * * 4839 3652 3195 4256 5606 4801 * 3993 3810 4798 1514 3591 * * 29 14 * 6713 * * * * 6795 0 0 L 30 3119 * * * 5462 * * 2681 * 1607 * * 5280 * * * 6662 1546 * * 30 0 * * * * * 0 6765 0 1000 K 31 4919 * * 4560 * * 4703 5335 1904 4617 4540 4665 * 3610 2889 6662 2899 3286 * 7014 31 8 * 7418 * * 0 * 6765 0 1000 D 32 * * 152 * * * * * * * * 4607 * * * 6185 4949 * * 6310 32 0 * * * * 0 * 6778 0 1000 T 33 2048 6759 4277 4625 6665 4978 * 4212 2464 5596 * 4635 6884 3916 5193 3202 3527 5529 * * 33 0 * * * * * * 6769 0 0 Y 34 4415 * 3208 4661 3370 * 3814 6746 3832 5560 * 2166 * 4197 6011 3431 6685 * 5666 3037 34 16 * 6529 * * * * 6769 0 0 G 35 * * 4933 * * 470 5070 * 6646 * * 2577 * 5786 6559 6719 * * * * 35 31 5565 * 2655 249 0 * 6758 1693 1000 D 36 4809 * 5161 6763 * * 4508 * 3582 4915 * 618 * 4034 5665 4878 * * * * 36 0 * * * * * * 6769 0 0 P 37 3348 * * 6713 5290 5910 * 4627 * 4052 * 6694 718 * 5949 4722 5272 4640 * 6406 37 14 6668 * 0 * * * 6769 1000 0 Q 38 5508 6595 * * * * * 1963 * 1914 6691 * * 5780 * * 6694 1292 * * 38 103 3863 * 764 1283 * * 6769 3693 0 A 39 2392 * 4652 4036 * 5412 * 5030 3311 6679 * 5671 2642 6691 5770 2196 3510 5611 * 6672 39 22 6069 * 584 1588 * * 6769 1712 0 G 40 5004 * 3082 6546 * 921 5364 6781 6722 * 6686 2322 * * * 4357 6569 * * * 40 75 4302 * 2563 268 * * 6769 2700 0 A 41 2276 * 4671 4537 * 4629 * 3317 3300 3220 5247 6645 * 2612 5309 6569 5136 3711 * 5559 41 76 4276 * 1821 480 * * 6769 2894 0 N 42 3572 * 3214 3341 * 5934 5067 5185 3677 6406 * 3448 3549 4816 5950 3361 2304 5863 * * 42 30 5624 * 1585 585 * * 6769 1767 0 V 43 5222 * 6726 6569 * 6637 * 2534 * 2862 6960 5909 * * 4965 5660 6448 875 * * 43 10 7108 * 2322 322 * * 6769 1000 0 A 44 3924 * 4949 3230 * 7407 4578 6816 4694 4610 * 3216 6804 5090 4152 2586 2428 4117 * 4415 44 0 * * * * * * 6769 0 0 F 45 6379 * * 6486 1496 5128 * 2442 * 3071 6758 * * * * 5740 * 3877 2362 * 45 43 5083 * 3044 187 * * 6769 2052 0 D 46 3767 * 3845 4214 5709 4421 5227 4192 3968 6399 * 4231 * 5733 5251 2170 2308 5097 * 5138 46 73 4332 * 3155 172 * * 6769 2956 0 T 47 2212 6759 6665 7010 6746 5396 5675 4074 6679 4597 5805 5982 6846 4479 6417 2612 2987 2427 * 5676 47 70 4686 6899 2461 289 * * 6769 2695 0 T 48 5345 * 2882 4516 * 4352 * 6714 4906 6547 * 2689 4779 5564 * 2235 2103 4812 * * 48 103 4503 5346 2045 400 0 * 6770 3026 1000 L 49 4032 * 4882 5549 * 2012 5632 4290 5535 3795 * 2338 4830 5990 6656 3358 3754 6535 * 5073 49 69 5071 5887 853 1164 0 * 6747 2093 1612 G 50 3312 * 5320 6868 * 1754 4718 4676 4287 6773 5402 4539 3452 5477 * 3733 3577 3439 * * 50 140 3430 * 1870 461 0 * 6765 4008 1714 N 51 3409 * 5582 5034 4873 3421 6886 6612 2952 6637 7321 3644 5934 5005 * 3208 1981 4202 6665 6704 51 83 4166 * 2155 367 * * 6769 3468 0 M 52 3952 * * * 4560 4076 6548 2623 4874 2071 5975 4701 5303 5532 * 5705 4092 2482 * 5040 52 153 3504 6311 1887 455 * * 6769 3980 0 G 53 3249 * 5164 6912 5795 3386 * 3680 * 7076 6365 4042 4598 5024 6094 1709 2910 4376 * 6275 53 126 3580 * 1817 482 0 * 6749 3801 1000 V 54 2881 * 3848 4130 * 5046 5877 4704 4817 4917 * 3140 3346 5418 4160 2604 3454 4770 * * 54 66 5295 5701 1405 684 * * 6769 2054 0 I 55 2495 * 4985 6542 4450 3800 * 3243 6796 4333 5851 * 4781 6662 7036 2986 2961 2845 5458 6542 55 67 4896 6382 1004 996 0 * 6755 2496 1642 T 56 6812 * 6403 6840 * 6674 * 3896 3235 4052 5500 7336 6432 5159 7289 3070 1212 3295 * * 56 183 3068 * 1824 479 0 * 6833 4553 1065 D 57 5022 * 2810 3440 * * * * * * * 4806 * 3901 4642 4667 957 6448 * 5281 57 23 5982 * 2644 251 * * 6769 1789 0 H 58 4998 * 1710 4569 * 4227 5835 5246 3966 6726 * 1979 * 4712 4607 4487 4645 5576 * 6399 58 56 5703 5715 2159 366 * * 6769 1678 0 N 59 2594 * 3930 2908 * 2609 5168 * 4367 6785 6426 4252 4766 4107 * 2521 4838 5778 * * 59 28 * 5725 * * 0 * 6754 0 1689 D 60 4636 * 2028 3978 * 6488 5731 * 4801 * * 1852 3940 3847 6668 3349 5292 * * 4641 60 137 3805 5719 2773 228 936 1067 6826 3667 1553 G 61 * * 5740 * * 27 * * * * * * * * * * * * * * 61 14 6695 * 0 * 1485 638 6817 1000 2313 T 62 5730 * 5558 3239 6214 6599 5708 2336 3752 4553 6702 4666 * 4776 4515 3988 3746 2352 * 4895 62 15 6564 * 2322 322 * 0 6815 1000 1755 Y 63 1571 * * * 4315 * * 5993 6564 6046 * * * * * 4544 3621 4768 * 1283 63 0 * * * * 934 1069 6815 0 1755 S 64 4915 * * 3693 7295 * 5265 4082 5041 4399 * 6492 * 3540 4726 3126 1193 4904 * * 64 0 * * * * * 0 6830 0 1000 A 65 1561 * * * 5491 6669 * 3216 * 4075 5399 5371 * 4713 * 4785 3436 2202 * 5063 65 0 * * * * 0 * 6826 0 1000 P 66 4461 * 5181 3590 * 6539 6804 4311 4249 5683 6698 3377 6130 4590 5743 3007 1500 5001 * 6346 66 0 * * * * * * 6778 0 0 L 67 5815 * * * 4183 6455 * 2745 * 1192 5692 * * * * 6757 * 1790 * 6495 67 31 5556 * 0 * * * 6778 1768 0 T 68 4565 * 6679 6564 6539 * 5689 5259 4137 * 6691 5571 6324 5216 4037 2374 1149 4668 * 6625 68 74 4321 * 0 * * * 6778 2775 0 S 69 3351 * 5281 * * 1610 * 6295 * 6650 5851 3803 6176 * 6630 1490 4129 * * * 69 27 5729 * 0 * * * 6778 1674 0 T 70 4243 6431 5550 5123 6779 5040 6463 4138 4895 3532 * 3319 5006 5541 * 3543 1295 6402 * * 70 49 5690 6176 0 * * * 6778 1608 0 T 71 4490 * 5724 3989 * 5569 5459 5443 2189 4318 6469 5298 6682 2729 4739 4299 2390 4274 * 6734 71 46 5652 6415 603 1551 * 0 6755 1688 1000 L 72 1438 * * 4287 6534 4972 * 5949 4232 6852 6713 5588 2838 4693 * 3169 4698 3660 * 5550 72 15 * 6563 * * 0 * 6749 0 1632 G 73 6572 * 5533 4011 * 341 * 6792 5541 5899 * * * 5848 6451 5771 5502 * * * 73 13 6853 * 1000 1000 0 * 6768 1000 1000 V 74 5243 * 3358 5255 * * 6407 3739 3757 5729 * 4095 5526 4728 4686 3028 1655 3770 * * 74 0 * * * * * * 6824 0 0 A 75 2230 * * * 3789 5081 4755 3529 5076 5141 * * * 6337 6226 4677 3630 2028 * 3151 75 16 6514 * 0 * * * 6824 1000 0 T 76 4719 * 3750 3991 * * 6821 4140 4515 5772 6890 3192 * 3943 5256 3093 1738 4075 * 6385 76 0 * * * * * * 6785 0 0 V 77 5855 6294 * * 4342 * * 1554 * 2681 * * * * * * * 1237 * * 77 0 * * * * * * 6785 0 0 T 78 4494 * 6686 6426 * 4747 * 4102 4867 * 4924 4616 * 5047 5048 2546 1003 * * * 78 0 * * * * * * 6785 0 0 V 79 962 * * * 6829 6783 * 4137 * 4997 * * 2439 * * 6502 * 2537 * 6296 79 13 6802 * 1000 1000 * * 6785 1000 0 K 80 5123 * 5488 4485 6593 6275 5812 5126 4608 6413 4592 * * 2742 3284 2652 1809 4870 6674 * 80 0 * * * * * * 6764 0 0 V 81 3257 * * * 3760 * * 2374 * 2382 6817 * * 6454 * 4919 5298 1525 * 6549 81 87 5295 4926 945 1058 * * 6762 2112 0 D 82 4514 * 2526 4990 * 2916 * * 5525 6303 * 1476 5272 5564 4831 3408 6343 5437 * 6274 82 0 * * * * 978 1023 6860 0 2612 G 83 4969 * 2616 6358 * 1136 6191 * 5428 * * 2447 * * 6294 3671 5257 * * * 83 34 6358 6510 0 * 0 * 6841 1000 1652 A 84 4559 * 4219 4957 * 3823 * 4440 3441 4091 6330 3535 6087 4950 6411 3521 2528 2567 * 5847 84 0 * * * * 0 * 6854 0 1000 A 85 2654 * 3598 5812 * 3803 5599 5364 4322 6589 6166 4401 3398 4210 6432 2579 3158 3999 * * 85 29 * 5669 * * * * 6882 0 0 F 86 4357 * 6351 6723 3123 5728 5194 3359 6239 1874 4697 4716 5112 4204 6063 3618 6098 5154 * 3536 86 39 * 5222 * * * 0 6866 0 1649 S 87 1841 * 3814 * * 4334 5339 5054 5232 * 5126 3501 4173 5087 * 2458 3645 5190 6478 5939 87 53 * 4790 * * 2000 415 6868 0 2684 V 88 2797 * 4139 * 6035 3785 * 4122 3778 4943 5348 4335 3633 4340 4972 3466 3673 2797 * * 88 0 * * * * 616 1526 6852 0 3378 P 89 2974 * 3668 4168 * 4639 6206 5176 3964 4743 * 5102 4698 3117 5186 2494 3101 4287 * * 89 60 * 4612 * * 0 * 6802 0 1710 S 90 3821 * 4028 5025 * 5991 * * 5022 * * 4212 2164 6093 * 2544 1736 5193 * * 90 30 * 5609 * * 591 1572 6771 0 2309 V 91 2286 * * 5240 5858 6159 4962 3221 4417 4328 * * 6497 3622 * 4863 3838 1715 * * 91 21 6095 * 0 * 691 1394 6789 1000 1848 T 92 * * 5162 4235 4858 * * 4573 3272 * * 4930 6141 4984 * 1980 1409 5051 * * 92 0 * * * * 0 * 6741 0 1000 V 93 3870 * * * 4419 * * 3678 5534 3187 * * * * * * * 566 * * 93 0 * * * * * * 6633 0 0 N 94 4616 * 5520 4309 * 4502 * 5279 5231 * * 3320 * 4090 * 2568 1111 * * * 94 0 * * * * * * 6444 0 0 F 95 * * * * 1191 * * 3793 * 1553 * * * 5305 * * * 3370 * 5205 95 0 * * * * * * 6252 0 0 T 96 * * * * * * * * * * * * * * * 3049 186 * * * 96 0 * * 0 * * * 5115 0 0 //