HHsearch 1.5 NAME d1cooa_ FAM FILE d1cooa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1cooa_.a3m DATE Mon Mar 8 17:21:19 2010 LENG 81 match states, 81 columns in multiple alignment FILT 105 out of 199 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4050 -0.1022 SEQ >ss_dssp CCHHHHSBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCCTTCCCSSSSCSTTCCC >sa_dssp ECDBACECADEBECEEEAADBADECEAECAACAACDDBEEBBEDEEBCEEBDECADDBAEDDECDDDCEBEECDCEDEEEE >ss_pred CCHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCC >ss_conf 940553618973999999999998688859999829999999477989899999999999838322787889996210069 >Consensus xxxlLxxpIxxLxLSxRxxnxLxxxgIxTvxdLxxxxxxdLxxixnxGxkslxeIxxxLxxxglxlgxxxxxxxpxxxxxx >d1cooa_ FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE >UniRef50_D1R556(133-191:422) Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R556_9CHLA E=2e-08 s/c=1.03 id=24% cov=73% ----LDEPIHILGLSQHAEKCLEKNGKCLIQDLLKADTQDLIFLKGMGQGHIDEIQQTLKKY------------------- >UniRef50_D1C4N8(92-146:193) Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4N8_SPHTD E=7e-07 s/c=1.00 id=24% cov=60% -------PIEELDLSPRVLRLLHRYGLHTIAAVERVDEATLMLLPNFDARARHEV-------------------------- >UniRef50_B1YES5(11-65:67) Putative uncharacterized protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YES5_EXIS2 E=0.0008 s/c=0.81 id=25% cov=69% -----------LVLAKPAQRALSEHGVTTLQMLETYREDELLQWHGIGPSSIPKLRQLLAEQGLTF--------------- >UniRef50_D1CF08(240-316:785) RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CF08_THET1 E=4e-06 s/c=0.68 id=25% cov=80% -------PISKLPLSMSIIHRLELAGIKTIGDITGENFSRLQEIPRIGKVTAKRILEAIQSYSEQLPAEVE---------- >UniRef50_C6Z4I8(147-211:226) Putative uncharacterized protein n=3 Tax=Bacteroides RepID=C6Z4I8_9BACE E=2e-07 s/c=0.88 id=24% cov=77% ---LLVTPLGNLDINFRVLRALRKYNIYQLEDLLRFIKyngfDALCRIPGMGMKSVEQLYHTLKERNI----------------- >UniRef50_B6FKF7(9-60:60) Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKF7_9CLOT E=0.0009 s/c=0.86 id=23% cov=58% ---------DDIEMSSRLRNVLRRNGFESLEGVREYPKEYFIKFRNMGQATLQEL-------------------------- >UniRef50_D1VE21(890-965:1583) Serine/threonine protein kinase n=1 Tax=Frankia sp. EuI1c RepID=D1VE21_9ACTO E=1e-09 s/c=0.85 id=22% cov=95% -----DTPLDAAGLSPRAVSAAHRLNATTVGDLLTLGSKEIISLPGTGAKTRQELQSRIRQWRRSLAAAPAGTPSAATAAQ >UniRef50_A8SD09(84-167:1010) Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD09_9FIRM E=2e-08 s/c=0.72 id=19% cov=85% LNSLSYHQITEIDMSARGFHYLTLMGCTTIAQLVRLKREDFQKTANIGEKTIEIIEESTKKWLLENGY------------- >UniRef50_B2Y1Z1(277-335:340) RNA polymerase alpha chain n=3 Tax=Spermatophyta RepID=B2Y1Z1_WELMI E=2e-05 s/c=0.85 id=20% cov=74% --------IDQLGLPSKISKSLRESHIYRVSDFMNYSQQDLKNLEYSKKESIEQTLEILHKY---FGINL----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 2743 * * 1790 * 1232 * * * * * * * 2880 * * 1 0 * * * * * * 3706 0 0 D 2 * * 1305 4513 * * * * 4290 * * 1308 * * 3374 * * * * * 2 0 * * * * * * 4114 0 0 P 3 * * * 2506 * 3677 * * 3205 * * 3723 2771 3258 * 2133 4717 * * 4485 3 0 * * * * * * 4420 0 0 I 4 * * * * 4376 * * 2240 4774 1100 * 3414 * * * * * 2803 * * 4 0 * * * * * * 4793 0 0 L 5 5529 * * * * * * 4719 4535 349 * * * * * 4412 * * * 3939 5 78 4902 5685 0 * * * 5110 1000 0 L 6 4997 * 1841 4310 3704 4008 * * 4594 3965 * 3193 * * * 2612 * 4973 * 3471 6 0 * * * * * 0 5273 0 1000 R 7 3342 * 5702 4373 * * 4329 4591 2802 4747 4929 4146 * 4668 2616 4752 2101 * * * 7 0 * * * * * 0 5396 0 1000 P 8 5862 * * 5500 * 6462 5048 * 5232 * * * 1017 4557 5929 1696 5017 * * * 8 17 6424 * 1585 585 0 * 5516 1000 1000 V 9 * * * * * * * 709 * 1934 * * * * * * * 2982 * * 9 0 * * * * * * 5612 0 0 D 10 4120 * 1703 1757 * 5114 5685 * 5020 * * 4670 6355 6973 6242 3114 3792 * * * 10 0 * * * * * * 5646 0 0 D 11 4969 6382 2342 1992 6650 5350 * 4651 4842 5766 6230 3413 * 3510 4059 3862 4628 5991 * * 11 0 * * * * * * 5643 0 0 L 12 5037 * * * 4594 * * 3341 6043 413 5122 * * * * 6509 * 5416 * * 12 62 4563 * 0 * * * 5810 2121 0 E 13 * * 2124 2406 * 2011 * * 3910 * * 2647 4589 4650 6015 * * * * 6541 13 19 6289 * 1000 1000 * * 5823 1000 0 L 14 * * * * 4020 * * 3555 * 336 4441 * * * * * * 6063 * * 14 22 6016 * 2000 415 * * 5793 1000 0 T 15 6600 6194 5652 6038 * 4833 * * 5173 * * 5343 3410 * * 640 3086 * * * 15 0 * * * * * * 5793 0 0 V 16 2958 * 5386 * 5360 6137 * 4428 6753 4996 5399 6697 2949 3753 4659 4156 3458 1826 * 5954 16 0 * * * * * * 5801 0 0 R 17 6461 * * * * * 5953 * 3816 * * 6049 3503 5075 473 5128 * * * 5695 17 15 6584 * 2000 415 * * 5997 1000 0 S 18 1827 6007 * 6609 * 5760 * 2668 * 4212 * * 7118 * * 2783 2309 3415 6085 * 18 0 * * * * * * 5997 0 0 A 19 3960 * * 5423 3424 * 7240 3820 4530 2505 * 6806 * 5090 2767 4809 3583 3506 * 2943 19 0 * * * * * * 6008 0 0 N 20 6172 6216 6114 6433 5699 5744 4392 6954 3214 5336 * 985 * 6348 2888 5263 4574 * * * 20 0 * * * * * * 6008 0 0 C 21 1551 2014 * 6595 5676 5432 5594 4191 6095 4202 6429 * * * 4792 3512 6830 4703 * 5010 21 0 * * * * * * 6008 0 0 L 22 4928 5693 * * 4653 * * * * 172 5598 * * * * * * * * * 22 0 * * * * * * 5928 0 0 K 23 3324 * 4617 2853 * * 4905 6120 1603 6661 4879 4903 * 6053 2719 4516 4702 5825 * * 23 0 * * * * * * 5928 0 0 A 24 3612 * 6079 3625 * 5946 5215 * 2349 4844 * 4172 * 5695 1645 3485 5110 5644 * 6037 24 7 7775 * 1000 1000 * * 5949 1000 0 E 25 1600 6037 6869 3549 * 6514 4319 4045 * 4162 3897 3516 * 6150 4415 3345 6622 4931 * 5234 25 0 * * * * * * 5949 0 0 A 26 6964 * 4436 4655 * 897 5267 * 3869 * * 2122 6446 5952 * 5853 * * * * 26 19 6226 * 3585 126 * * 5947 1000 0 I 27 4959 5096 * * 4299 * * 695 5287 4012 * * * * * * * 2776 * 4765 27 0 * * * * * * 5947 0 0 H 28 * 5978 4017 3952 3513 6324 3279 * 3507 3702 7046 3038 * 5514 4591 6299 2572 4569 * 3753 28 0 * * * * * * 5947 0 0 Y 29 * * * * 5047 * * * 4896 4347 * 4920 * 5969 3899 3349 722 5982 * 4301 29 0 * * * * * * 5947 0 0 I 30 5132 * * * * * * 2159 * 1944 6192 * * * * * 5007 1283 6427 5623 30 0 * * * * * * 5947 0 0 G 31 3335 * 4586 2160 * 1637 * * 6048 5616 * 4675 * 4453 3295 3975 * * 6722 5722 31 0 * * * * * * 5947 0 0 D 32 5043 * 984 2391 * 6167 5725 * 5652 * * 5308 * 2763 * 4749 6523 * * * 32 0 * * * * * * 5947 0 0 L 33 6226 * * * 4701 * * 4692 * 346 * * * * * * * 3023 * * 33 0 * * * * * * 5947 0 0 V 34 2883 4364 * 5996 5722 * * 3451 5440 1703 5272 6083 * 6053 6167 5192 4570 2229 * 7096 34 28 5725 * 2000 415 * * 5947 1000 0 Q 35 3542 * 3546 4626 * 3833 5584 * 2614 6074 5642 4184 * 3086 2620 3424 4552 5180 * * 35 0 * * * * * * 5947 0 0 R 36 5147 4575 * 5977 4180 * 6192 3943 3219 1892 4390 5114 * 4563 4538 6427 * 3762 7515 2733 36 0 * * * * * * 5947 0 0 T 37 * * 3232 5733 * 4727 6651 5969 4669 5547 * 3428 3372 * 5725 1912 1856 * * * 37 0 * * * * * * 5947 0 0 E 38 4807 * 3313 2109 4846 4853 * 6170 2680 5134 6830 * 4133 3198 3589 4619 5263 6083 6682 6053 38 23 5969 * 2000 415 * * 5947 1000 0 V 39 3361 * 2939 2133 * 5085 6472 * 3959 * 5750 4022 7254 3771 3635 3111 3735 6964 * * 39 31 6722 6428 1585 585 * * 5947 1000 0 E 40 4598 * 1463 2082 * 5498 * * 4952 * * 5340 * 3724 3999 4843 4586 5020 * 4829 40 49 6465 5517 2000 415 * 0 5946 1000 1000 L 41 * * * * 4867 * * 3458 * 349 3972 * * * * * * 5271 * * 41 0 * * * * 1512 623 5936 0 2075 L 42 5469 5948 * 4101 6849 * * 3242 3382 1642 3677 * * 4785 3219 4451 5123 5033 * 4456 42 0 * * * * 0 * 5944 0 1635 K 43 3605 5725 5285 3621 5978 5838 6076 * 2246 5611 7065 3229 * 4615 2375 2799 5553 * * * 43 0 * * * * * * 5947 0 0 T 44 5434 6565 * * 3419 * * 1480 6206 2275 4027 5750 * * * 6061 4138 3224 5377 6471 44 0 * * * * * * 5947 0 0 P 45 5736 * 5498 4764 * * 3520 5652 2274 6081 * 4977 2082 6206 2102 4669 * 6747 6438 5722 45 0 * * * * * * 5947 0 0 N 46 * * * * 6222 1177 5616 * * * * 1165 * * 5977 5689 * * * 4545 46 0 * * * * * * 5947 0 0 L 47 5652 * * * 2134 * * 2330 * 1694 3199 * * * * 5929 6205 3246 * * 47 11 * 6994 * * * * 5947 0 0 G 48 6078 * 5432 * * 249 5996 * 5048 * * 5649 6336 * * 4567 * * * * 48 0 * * * * * 0 5951 0 1000 K 49 3763 * 5321 3187 * 5380 * 5503 2361 * 5968 4204 2637 3766 2938 5348 7062 3948 * 5720 49 0 * * * * * 0 5951 0 1000 K 50 4607 * * 4591 * 4564 6466 * 837 6307 5212 * * 5019 3650 4564 4809 4060 * 5977 50 0 * * * * 0 * 5951 0 1000 S 51 3219 5982 6317 * * 5589 5978 5652 * 5750 * 6222 * 5197 4871 1051 2183 6446 * * 51 0 * * * * * * 5947 0 0 L 52 3743 6911 * 7001 6454 * * 2305 6588 1399 4307 * * * 3901 6317 5747 2940 * 5225 52 0 * * * * * * 6017 0 0 T 53 3672 * 2795 1856 5968 6008 6010 * 3867 6648 * 3885 6302 3096 3482 4217 5197 6975 * * 53 0 * * * * * * 6017 0 0 E 54 5091 * 5595 743 * * * 4004 4744 5209 5104 * * 3279 4081 5695 * 6008 * * 54 0 * * * * * * 6017 0 0 I 55 6223 6364 * * * * * 860 * 1846 * * * * * * 4798 3193 * * 55 0 * * * * * * 6017 0 0 K 56 5307 * 6472 2262 * * 6123 3860 2316 3171 * * * 3943 2588 6054 5897 3753 * 5474 56 0 * * * * * * 6070 0 0 D 57 3357 * 2681 1702 * * 5163 6889 3790 5852 * 4107 * 3619 3433 4511 5253 6511 * * 57 0 * * * * * * 6061 0 0 V 58 2261 6524 * 4642 * 4681 * 3610 2091 3965 6183 6695 * 7014 3422 3361 4458 4223 * * 58 0 * * * * * * 6057 0 0 L 59 * * * * 4603 * * 3673 * 487 4125 * * * 5227 * 5546 4021 * * 59 24 5911 * 0 * * * 6063 1428 0 A 60 2862 * 3550 2853 5935 4041 4700 5304 2496 5114 * 3970 * 4484 3365 4780 5399 5267 * * 60 19 * 6273 * * * * 6062 0 0 S 61 3461 * 4835 1927 5780 5659 * 4805 2113 4793 * 6192 * 2975 4918 3881 * 5782 * 6598 61 17 * 6394 * * * 0 6044 0 1000 R 62 6595 * 5459 5966 3432 * 4420 5618 3426 1930 5529 5271 6033 * 3435 5341 * 6561 4342 2352 62 32 * 5496 * * * 0 6048 0 1790 G 63 4065 * 6403 * * 717 * * 6268 5385 * 2810 * 4853 4843 4168 6019 * * * 63 18 6348 * 0 * * 0 5962 1000 2174 L 64 5382 * 6127 4728 4510 * 6286 3700 5197 873 5196 * * 5801 3804 * * 4720 * 4005 64 14 * 6697 * * 496 1781 5910 0 2174 S 65 3621 6348 6693 3489 5791 * 3046 6154 3224 * * 4466 5548 3745 2934 2652 3697 * 5647 5707 65 30 * 5607 * * 0 * 5793 0 1648 L 66 * * * * 1923 * * 6022 * 817 5066 5201 * * * 6254 5685 4474 * 5742 66 12 * 6888 * * 0 * 5810 0 1000 G 67 3867 * * 5562 * 649 * * 3327 * * 3129 4532 * * 6009 * * * * 67 31 * 5541 * * * 0 5399 0 1000 M 68 3466 * 4735 4330 4909 * * 3662 * 4641 1224 * * 5888 5942 3517 4493 5633 * 4143 68 0 * * * * 1000 1000 5574 0 1522 R 69 3440 * 2356 2804 * * * * 3271 * * 3304 4021 * 2741 3693 5338 * * 4283 69 0 * * * * 0 * 5287 0 1000 L 70 5542 * * * * * * 2571 4217 1748 * 4024 4163 4988 * 5149 4151 2415 * 4719 70 0 * * * * * * 5219 0 0 E 71 4551 5271 2883 1610 * * 4761 * 5029 * * * 1692 * * 3455 * * * * 71 35 5389 * 3459 138 * * 5017 1000 0 N 72 * * 2409 2002 * 1500 * * * 4272 * 3576 * * * 3777 * * * * 72 0 * * * * * * 4731 0 0 W 73 3110 * * * 4058 4855 3062 * * * * 4240 * 5043 4278 3470 3196 * 2163 3154 73 0 * * * * * * 4484 0 0 P 74 4428 * 2724 3295 * * * * * 1994 * 4199 1876 * * 3559 4736 * * * 74 0 * * * * * * 4268 0 0 P 75 * * * 3209 * * 3702 4130 * * * * 594 * * 3392 * * * * 75 0 * * * * * * 4109 0 0 A 76 2554 * 3629 1700 * * 3533 * 4052 * * * 3756 * * 2182 * * * * 76 0 * * * * * * 3652 0 0 S 77 2379 * * 3935 * * * * 3872 * * 2697 * * 3714 1466 3612 * * * 77 0 * * * * * * 3509 0 0 I 78 2039 * 3157 3736 * * * 3776 3752 3238 * * * * * * 2917 2442 * * 78 0 * * * * * * 3409 0 0 A 79 726 * * 2419 * * * * * * * * 3367 * * 3165 * * * * 79 0 * * * * * * 3339 0 0 D 80 1899 * 1404 1498 * * * * * * * * * * * * * * * * 80 0 * * * * * * 3032 0 0 E 81 * * 1754 1440 * * * * * * * 2902 * 2313 * * * * * * 81 0 * * 0 * * * 2846 0 0 //