HHsearch 1.5 NAME d1coka_ FAM FILE d1coka_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1coka_.a3m DATE Mon Mar 8 16:15:05 2010 LENG 68 match states, 68 columns in multiple alignment FILT 107 out of 226 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.8 EVD 0.4394 1.8077 SEQ >ss_dssp CCCCCTTHHHHHHTTCTTTHHHHHTTSTTSGGGSSSCCHHHHTTTTCCTTSHHHHHHHHHHHHHCCCC >sa_dssp EEEDEEAEEDADEBCAEEBCEDADEECAECCEEADEBDCEDACECEBDEEDDEDACEAADCCEEDEEE >ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC >ss_conf 98754389999973917799999753778899998489999986198867899999999998521259 >Consensus xpxdxsixxwLxxlgLxxYxxxFxxxGxxtlxxlxxltxeDLxxlGIxxgHrxxIlxxixxLrxxxxx >d1coka_ YHADPSLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDLKQGHDY >UniRef50_Q4SI07(842-909:912) Chromosome 5 SCAF14581, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SI07_TETNG E=4e-14 s/c=1.16 id=19% cov=99% YPLFISIGDWLDSIKMCQYKNNFLAAGYTTLDSISTMSIDDIRRIGIClLGHQRRILSSIQSLRlQLH-- >UniRef50_B3S9L0(5-64:231) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S9L0_TRIAD E=6e-05 s/c=0.81 id=26% cov=68% -----TLQSWLESFGCSNFYNHFKTRGYDNLQKCCNIGNDDLNVMGIQQR------------------ >UniRef50_A9V9A3(1355-1417:1487) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V9A3_MONBE E=0.0002 s/c=0.75 id=22% cov=93% -----SLPELLAKLNLHNYVQVFAQQEVD-LCTFLSLSEEDMKQLGVSTfGARRKMAMAIKELRELRSY >UniRef50_Q9VMJ4(47-102:944) CG9098, isoform A n=8 Tax=melanogaster group RepID=Q9VMJ4_DROME E=0.0003 s/c=0.83 id=13% cov=57% -------------------------QEFSTVDDVVDITDKELKQFGVRGAHRQRMVNSLLGVR----- >UniRef50_Q4RG97(913-971:1212) Chromosome 12 SCAF15104, whole genome shotgun sequence. (Fragment) n=7 Tax=Coelomata RepID=Q4RG97_TETNG E=0.0003 s/c=0.79 id=22% cov=87% ---DMNISQFLKSLGLDHLRDIFEREQI-TLDVLADMGHEELKEIGINAyGHRHKLIKGVERL------ >UniRef50_C3Z6V6(78-139:173) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z6V6_BRAFL E=4e-09 s/c=1.01 id=18% cov=91% ------VLEWLGAMGLEQYHSTLVENGYDAIDFITDITWEDLQEIGITKLGMHSIQFTLCHSRKLEE- >UniRef50_B2VYV8(80-142:843) Putative uncharacterized protein n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VYV8_PYRTR E=7e-08 s/c=0.93 id=21% cov=93% -PTQPNLAAVLDRLGLAEYLHVLTDNGFHNWETVVDITEDDLTTLNFKLGHRRLLQREIATYR----- >UniRef50_A8WG24(405-465:622) Zgc:172142 protein n=2 Tax=Danio rerio RepID=A8WG24_DANRE E=0.0002 s/c=0.77 id=22% cov=40% YTGPKDLSEFLEQIGFSKYLPLLEEQ------------------------------------------ >UniRef50_C3Z7L5(5-62:2207) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z7L5_BRAFL E=1e-05 s/c=0.88 id=20% cov=74% ---------------CGQYAEIFHRFGFETLQSVCQLQLHTLQQMGVKPEDCEKILENVSVLKQ---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * 1405 * * * * * * * * * * * * * * 684 1 0 * * * * * * 3706 0 0 H 2 * * * * * * 3594 * * * * 4035 506 * * * 4027 3463 * * 2 0 * * * * * * 4301 0 0 A 3 1561 3993 * * * 4348 * * * 4695 * * 4177 3854 * 2433 2674 4499 * * 3 0 * * * * * * 4890 0 0 D 4 * * 830 3422 3064 * * * * 3417 * * 4691 3437 * * * * * * 4 54 * 4773 * * * * 5060 0 0 P 5 4760 3574 4266 4630 * 4218 4745 3758 2904 3652 4226 * 2075 4559 * 5032 * * 4478 * 5 0 * * * * * 0 5171 0 1000 S 6 5253 * 3240 5742 * 6202 * * * * * 3387 * 5406 * 885 2515 * * * 6 0 * * * * 0 * 5558 0 1000 L 7 4908 * * * * * * 1620 * 1896 * * 5661 * * * * 1502 * * 7 0 * * * * * * 5798 0 0 V 8 3822 5278 5705 2726 5237 4840 * * 6923 4201 6239 * 3523 4213 4250 2481 3306 3215 * 6118 8 0 * * * * * * 5798 0 0 S 9 3377 * 3027 2247 * 5223 * 5482 4086 * 5916 4986 * 3208 6192 2340 4129 4733 * * 9 0 * * * * * * 5798 0 0 F 10 * * * * 2366 * * 5234 * 4446 * * * * * * * 5906 530 5369 10 0 * * * * * * 5854 0 0 L 11 * * * * 4382 * * * * 71 * * * * * * * * * * 11 0 * * * * * * 5859 0 0 T 12 2915 * 3371 2614 * 4639 4591 5107 3119 6270 5797 4622 5965 4264 3965 3939 3581 5974 * 6226 12 0 * * * * * * 5859 0 0 G 13 3048 * 4482 3819 * 3949 * * 4874 4293 * 5253 * 4388 3125 1617 3740 5370 * * 13 0 * * * * * * 5859 0 0 L 14 * 6099 * 6118 4531 * 5930 1510 * 1079 5223 * * * 5632 * * 4642 * * 14 0 * * * * * * 5859 0 0 G 15 5193 6164 5561 * * 787 3915 * 2918 * * 4135 6618 6397 4817 4474 * * * * 15 17 6453 * 1000 1000 * * 5859 1000 0 C 16 * 3413 * * 5188 * * 5243 * 560 2525 * * * * * * * * * 16 0 * * * * * * 5877 0 0 P 17 4162 5577 3923 2208 * 3535 4932 * 4420 4678 * * 3439 3843 * 2033 5077 * * * 17 0 * * * * * * 5877 0 0 N 18 5349 4811 5165 2378 * * 4423 * 3603 * 4988 3906 * 1706 3460 4225 6005 6539 * 6037 18 0 * * * * * * 5877 0 0 C 19 * 4805 * * 4238 * * * * 5629 * * * * * * * * * 166 19 0 * * * * * * 5877 0 0 I 20 2400 * * 4119 * 6120 5447 3101 3358 3033 * * * 5267 4537 4172 3653 2805 * 4947 20 0 * * * * * * 5773 0 0 E 21 4327 * 2122 2401 * 4426 5562 * * 5787 * 4902 3110 3236 6297 2998 4628 6443 * * 21 0 * * * * * * 6510 0 0 Y 22 3944 * * 5283 * 6018 3629 4153 3972 2579 6175 2503 6418 * 5111 2941 3704 4076 * 5121 22 0 * * * * * * 6529 0 0 F 23 * * * * 288 * * * * 2637 5617 * * * * * * * * * 23 0 * * * * * * 6538 0 0 T 24 3953 * 5385 3218 6554 * 4223 3232 4377 2500 4954 5810 * 4648 4562 4216 3099 3242 * * 24 0 * * * * * * 6538 0 0 S 25 3908 * 2855 2321 * 5444 5155 * 3837 4154 * 3880 * 4011 3059 3389 4028 6496 * * 25 13 * 6829 * * * * 6538 0 0 Q 26 2215 * 6313 3837 4639 4497 4506 * 6430 * * 1924 * 2245 5439 4324 6094 * * * 26 14 * 6659 * * * 0 6536 0 1000 G 27 6241 * 4880 3502 * 440 6048 * 5736 * * 4122 * 6483 5320 * * * * * 27 0 * * * * 922 1082 6625 0 1586 L 28 * 6041 * 5568 2238 * * 2988 * 2697 * * * * * * * 3295 6028 1497 28 17 * 6388 * * 0 * 6481 0 1000 Q 29 4511 5010 1533 3886 6107 5736 5468 5140 5135 5702 * 3977 * 6163 5536 2993 3360 5203 * 5017 29 199 * 2955 * * 0 * 6628 0 1000 S 30 6502 5915 2780 6015 5411 4216 * * 5714 * * 4138 * 6211 5292 2200 1316 * * * 30 43 * 5086 * * 0 * 6278 0 3545 I 31 5248 * * * 4478 * * 3045 * 1178 3133 * 4032 * * * * 2843 4910 5803 31 21 * 6131 * * 0 * 6474 0 1696 Y 32 4299 6318 2348 1756 * 4239 4944 * 4531 * * 4906 * 3652 3362 4090 5712 * * 5182 32 0 * * * * 0 * 6097 0 1000 H 33 3547 * 3104 4982 3630 5550 5328 5146 4915 3433 5812 5506 * 2607 5297 3292 3196 4473 * * 33 0 * * * * * * 6134 0 0 L 34 5499 3444 * * 5399 * * 2428 * 1436 4969 * * * * * * 1863 * * 34 0 * * * * * * 6147 0 0 Q 35 2571 4826 5847 5558 6116 6574 5955 5412 3319 2918 4718 6272 4873 4345 3743 2601 4574 4634 7724 * 35 13 * 6779 * * * * 6133 0 0 N 36 5248 * 2297 3720 5851 4560 3540 6386 6512 4420 7049 3063 * 3239 3484 3723 3943 * 6755 7274 36 0 * * * * 0 * 6134 0 1000 L 37 * 5850 * * 5089 * * 2273 * 1024 2872 * * * * * 4589 4008 * 6137 37 28 5678 * 0 * * * 6132 1260 0 T 38 5114 * 5786 3852 * 3766 * 6275 5725 6526 5540 3295 * 4458 5591 2689 1241 * * * 38 0 * * * * * * 6132 0 0 I 39 4018 * 3204 1780 * * 3832 4433 4362 3951 4195 5592 3965 5427 * 4710 6142 4627 4227 * 39 0 * * * * * * 6132 0 0 E 40 4166 * 2300 1399 * 4804 6322 * 5106 * * * 5290 3436 5213 3054 5694 * * * 40 19 6275 * 0 * * * 6132 1000 0 D 41 5682 5694 521 4228 * * 4815 5128 5611 * * * * 4180 5565 6305 5341 6290 * * 41 0 * * * * * * 6132 0 0 L 42 * * * * 4671 * * 4497 * 291 4358 * * 5540 * * * 5112 * * 42 0 * * * * * * 6132 0 0 G 43 5325 * 3042 3669 * 6204 5206 4821 2417 3961 * 3751 4648 2835 4208 4449 3865 5342 * * 43 0 * * * * * * 6234 0 0 A 44 2593 6428 3270 2552 * 5103 7427 * 4399 5485 * 4608 * 3345 3710 3268 4087 4223 * 6411 44 0 * * * * * * 6234 0 0 L 45 5653 * * * 5066 * * 2199 * 1098 2120 * * 5510 * * * 6242 * * 45 16 6492 * 0 * * * 6234 1000 0 K 46 * * 4406 5266 * 598 * * 3435 6647 * 3514 * 6293 5742 5483 * 5490 * * 46 0 * * * * * * 6225 0 0 I 47 * * * * 5821 * * 726 * 6024 * * 5490 * * * * 1555 * * 47 258 2610 * 0 * * * 6225 3725 0 P 48 * 4475 * 5343 5842 3707 * * 2662 4694 * 5017 2006 5029 4860 3198 2427 * * * 48 86 4104 * 0 * * * 6392 2553 0 E 49 4316 * 5683 3892 * 4060 * 4009 2977 2104 5372 4249 3399 5378 5232 4531 3405 5542 * * 49 185 3058 * 494 1787 * * 5936 3213 0 Q 50 4629 * 5813 2636 * 990 * * * 4040 * * * 2866 5237 4650 * * * 6262 50 28 5702 * 0 * * * 5895 1000 0 Y 51 3741 * 4317 4731 5452 5003 544 * * 5361 * * 4270 * * * * * * 5552 51 0 * * * * * * 5972 0 0 R 52 * 4995 * 5361 * * 3951 * 3917 * 5027 * * 2699 669 * * * * * 52 0 * * * * * * 5999 0 0 M 53 4756 * * 3667 * * 2516 4057 3027 4073 5581 5192 * 4647 1905 4778 4396 5154 * * 53 0 * * * * * * 5999 0 0 T 54 3855 * * * * * 4778 6077 1616 3458 * * 4990 3783 2262 4264 4286 4423 * * 54 0 * * * * * * 5999 0 0 I 55 * * * * * * * 652 * 1876 3947 * * * * * * 5245 * * 55 0 * * * * * * 5999 0 0 W 56 3725 * * * 4986 * * 5058 4113 1180 3838 6761 * 2859 * * * 4363 3352 * 56 0 * * * * * * 5798 0 0 R 57 5074 * 5626 3662 4927 5985 * * 1860 3574 4798 4667 * 4451 2010 3564 * 6761 * * 57 0 * * * * * * 5798 0 0 G 58 2016 * * 5398 * 2284 5248 5816 3547 4800 6704 3974 * 5834 4736 2345 4912 * * * 58 0 * * * * * * 5807 0 0 L 59 3886 * * * * * * 1101 * 1696 * * * * * * * 2665 * * 59 0 * * * * * * 5801 0 0 Q 60 3235 4909 4643 2892 * 5507 5684 * 2855 3677 * 4407 * 2252 4103 3924 * 5197 * 5674 60 0 * * * * * * 5801 0 0 D 61 3060 * 3030 2625 5673 4989 4298 4925 3609 * * 4538 * 4260 5890 3172 3744 3624 * * 61 0 * * * * * * 5651 0 0 L 62 * * * * * * 5138 5591 * 417 5968 5405 * * 5898 4220 4848 4958 * 5336 62 0 * * * * * * 5591 0 0 K 63 * * * * * * * * 1712 * * 5009 * 4548 688 * * * * * 63 50 4871 * 0 * * * 5353 1000 0 Q 64 * * * 1620 * 3510 4278 * 4023 4132 * 4879 * 1783 3753 5785 * * * * 64 0 * * * * * * 4891 0 0 G 65 * * * * 3798 3973 * * 3897 1158 * * * 3943 3550 * * 3504 * 3175 65 0 * * * * * * 4610 0 0 H 66 * * * 3078 3508 * 764 * * * * * * * 3437 * * * * 3155 66 0 * * * * * * 4590 0 0 D 67 * * 1220 1268 * * * * * * * * * * * 2687 * * * * 67 0 * * * * * * 3831 0 0 Y 68 * * * * 2023 * * * * * * * * * * * * * * 407 68 0 * * 0 * * * 2612 0 0 //