HHsearch 1.5 NAME d1cf7b_ FAM FILE d1cf7b_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1cf7b_.a3m DATE Wed Mar 10 06:30:53 2010 LENG 82 match states, 82 columns in multiple alignment FILT 59 out of 63 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4097 -0.2258 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCCSSCEEBCCCC >sa_dssp EEDDECBCDCACDCAEEDDDBCBDDAADCBBDDCCECEECEEEDCDECCEDACDCADCAAEEBCEEEBBCCEEEDADCDCEE >ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC >ss_conf 9425899999999999808836999999999998301356777441015669999999999999857786328678871179 >Consensus xxGLrxxSxkVcexVxxkxxTtYxeVAdeLvxexxxxxxxxxxdxxxdxkNIRRRVYDaLNVLxAxxIIxKxkKxIxWxGlp >d1cf7b_ GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLP >UniRef50_A0CYJ2(90-169:287) Chromosome undetermined scaffold_31, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CYJ2_PARTE E=4e-16 s/c=1.07 id=39% cov=94% -KSLKKWSLKYiskrVEKELQNHTVGYSEICQKLTDEMTKEMEGHQDYGLKDVKNLRRRVYDALNVMISVGIVVKEKKLMR----- >UniRef50_A2FFL4(10-82:220) Putative uncharacterized protein n=2 Tax=Trichomonas vaginalis RepID=A2FFL4_TRIVA E=8e-11 s/c=0.93 id=34% cov=90% ---LKALAPRLLELLLELGETTSESIATILINNLIQENPH-----SFSQETVRRRIYDVINVLSATGIIEKDGKKLNWRGL- >UniRef50_A2E943(22-89:223) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2E943_TRIVA E=5e-14 s/c=1.16 id=36% cov=84% ---LNNLATPIYKIITKKVTTTYQEVADIFVATLDKDTLEESKD-----KTLRRRVYDVINVLIAADLLEKNNKQI------ >UniRef50_B6AES5(70-155:274) Transcription factor E2f/dimerisation partner domain-containing protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AES5_9CRYT E=1e-16 s/c=1.02 id=33% cov=96% ---LRQVAVKICSLLKVWRISTHNDIADILIMEYLGPVDQErynydilyQKSRESSEKSIRKRVYDAINVLISATIIGRSGKSITWQGI- >UniRef50_A0DQU5(50-117:230) Chromosome undetermined scaffold_6, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0DQU5_PARTE E=9e-11 s/c=1.00 id=38% cov=78% --GLKEMSKTVCEIIKNQKKTNLQLILSEI---------KKLHPQSTNTVNQSRRVYDCLNVMMAMGIIKKSDK-------- >UniRef50_Q5CGM8(10-85:198) DP transcription factor CG4654-PA n=1 Tax=Cryptosporidium hominis RepID=Q5CGM8_CRYHO E=3e-16 s/c=1.14 id=39% cov=90% ------FSHRVCEKVSAIKVASYHEMTEHLINMELGDGPGRSKNP--EAKNIRRRVYDVLNVLLAIGVVRRSvgvGKNLIWAGL- >UniRef50_Q8SRS9(17-76:212) TRANSCRIPTION FACTOR OF THE E2F/DP FAMILY (DIMERIZATION PARTNER) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRS9_ENCCU E=6e-08 s/c=0.98 id=27% cov=73% --GLKYITQAVFQVLRENGACTYSFICKNIV--------------FPNTETLNRRIYDVLNVMKAVRLVDKKGKR------- >UniRef50_A0DAV5(149-224:357) Chromosome undetermined scaffold_43, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0DAV5_PARTE E=4e-18 s/c=1.21 id=39% cov=94% -KGLRNLSVKVRDIVLELKSTSYKDVAQRLIQDLGSDGQIVELDNPKDEQNIKRRVYDALNVMIASKVLRKDGKRVI----- >UniRef50_A0D614(191-259:409) Chromosome undetermined scaffold_39, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0D614_PARTE E=9e-12 s/c=1.03 id=35% cov=84% ---LKYLSWQVHKLVGSQRETTYKQMADQL------ASEISKSSLSSDSKNLKRRVYDSINVMVALGVLEKQKKIII----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1947 0 0 K 2 * * * * * 4841 * * 1029 * 4257 * * * 2076 * * * 2431 * 2 0 * * * * * * 3139 0 0 G 3 * * * * * 230 * * * * * * * * * 2762 * * * * 3 0 * * * * * * 3532 0 0 L 4 * * * * * * * * * 54 4778 * * * * * * * * * 4 0 * * * * * * 4020 0 0 R 5 * 5157 * * * * * * 1567 * * 4065 * * 799 * * * * * 5 0 * * * * * * 4052 0 0 H 6 4391 * * 3744 4127 5194 1805 5633 4745 * * 3108 * 3043 4427 * * * * 2593 6 0 * * * * * * 4052 0 0 F 7 * * * * 1337 * * 3371 * 1863 3399 * * * * * * 3588 4779 5784 7 0 * * * * * * 4100 0 0 S 8 2227 * * * * * * * * * * * * * * 480 3848 * * * 8 0 * * * * * * 4100 0 0 M 9 5075 * * * 4638 * 4622 5926 3039 3357 2404 * 5080 4864 4231 4191 3307 3101 5179 4388 9 0 * * * * * * 4100 0 0 K 10 3859 5804 * 5794 * * * 4822 1168 6228 4063 * 5152 3634 2348 * 4777 * * * 10 56 6563 5175 4087 87 * * 4105 1000 0 V 11 * * * * * * * 2468 * 5064 * * * * * * * 412 * 4731 11 55 4731 * 2000 415 * 0 4074 1000 1000 C 12 * 967 * * 4821 * 5177 * 3231 3680 5167 * * * 5699 4800 * 3915 5210 3951 12 0 * * * * * 0 4074 0 1000 E 13 4991 * 3843 1137 * * * * 3013 * 5167 4385 * 2912 * 4417 3946 * * * 13 0 * * * * * 0 4074 0 1000 K 14 * * * 5167 * * * 2001 1157 2451 * * * 5127 * * 5210 4821 * * 14 0 * * * * * 0 4074 0 1000 V 15 * * * 4731 * * * 2756 * 2384 * * * * * * * 683 * * 15 0 * * * * 0 * 4074 0 1000 Q 16 * * * 2661 5034 5203 * * 1816 3564 * * * 2509 2968 3904 5152 5843 * * 16 0 * * * * * * 4105 0 0 R 17 3078 * 5257 1547 * * * * 5152 * * 3979 * 3693 3349 3046 4544 3604 * * 17 0 * * * * * * 4105 0 0 K 18 * * * 4566 5959 * 5119 4648 962 3491 * 3354 * 3974 5198 * * * 3604 * 18 0 * * * * * * 4105 0 0 G 19 5216 * * 5175 * 1590 4034 * 2040 * 5407 4355 * 5119 3013 4555 * 4592 * * 19 0 * * * * * * 4105 0 0 T 20 4882 * * 3190 * * 5444 3141 3932 4169 5216 * * 4934 3926 3471 1966 2972 * * 20 0 * * * * * * 4105 0 0 T 21 3904 3859 * * * * * * * 5175 * * * * * 3604 478 4788 * * 21 39 * 5216 * * * * 4105 0 0 S 22 * * * * * 4638 * * * * * 2894 * * * 1871 857 * * * 22 0 * * * * 0 * 4077 0 1000 Y 23 * 5225 * * 5119 * 4458 6225 * 3962 * * * 4766 * 5089 * * * 405 23 0 * * * * * * 4105 0 0 N 24 5198 * * 5089 * * 4648 * 2350 * * 1484 * 3452 6031 2518 4766 4975 * * 24 0 * * * * * * 4105 0 0 E 25 * * 2337 738 4350 * * 5260 * 4782 * * * 4018 * 5093 * * * * 25 15 6554 * 2322 322 * * 4103 1000 0 V 26 * * * * * * * 1843 * 5260 3916 * * * * * * 669 * * 26 0 * * * * * * 4103 0 0 A 27 481 3368 * * * * * * * 4782 * * * * * 4979 4126 4028 * * 27 0 * * * * * * 4103 0 0 D 28 * * 821 3567 * 5244 * * 3376 * * 3656 * 3610 * 4782 5093 * * * 28 0 * * * * * * 4103 0 0 E 29 5206 * 5287 1016 * * 4665 2963 3676 * * 3829 * 3781 4342 * 6102 * * * 29 0 * * * * * * 4103 0 0 L 30 * * * * 5156 * * 2266 * 388 * * * * * * * * * * 30 194 * 2992 * * * * 4103 0 0 V 31 * 4314 * * 5740 * * 1558 * 4716 * * * * * * 3790 1056 * * 31 69 * 4426 * * * 0 3880 0 2133 S 32 1859 * 3577 3656 * 4893 5661 * 4188 * 3415 3524 * 3379 5854 2997 * 4893 * * 32 83 5408 4964 0 * * 0 3785 1000 2309 E 33 6015 * 3762 619 * * * * 3944 * 5277 3613 * 4865 * * 4244 * * * 33 85 * 4124 * * * 0 3737 0 2633 F 34 * 5851 * 3680 2461 * 4814 * * 1800 3308 * * * 5199 * * 5617 * 1990 34 44 5869 6295 1585 585 2622 256 3666 1000 2826 T 35 3588 4723 4822 * 4346 4366 * 3041 2792 2822 6249 * * 3859 4336 4070 3451 4823 * 5593 35 22 6023 * 1585 585 * 0 3734 1000 2810 N 36 3650 * 3943 4513 * 2690 5430 * 2427 4830 * 3616 * 2475 5650 3371 5802 5938 * * 36 29 * 5638 * * 2766 229 3734 0 2810 S 37 3417 * 3349 1714 * 3680 5938 * * * 4972 3378 2910 5540 * 3823 4165 * * * 37 133 3787 6002 1560 597 2734 235 3783 1981 2684 N 38 3688 * 4356 4999 4216 4370 4269 5474 * 5270 4459 2064 4471 3266 5817 3265 4895 4297 * * 38 106 5542 4344 1000 1000 2938 202 3838 1000 2616 N 39 6146 * 3039 3114 * 4599 * 5217 4326 3800 * 2767 2485 4325 4052 3521 * 5431 * 6296 39 72 6359 4775 0 * 1955 430 3777 1000 2782 H 40 * * 5142 3957 * 2856 3401 3174 2799 5430 3513 5623 * 3358 3304 3690 * 6300 * * 40 272 3763 3349 439 1931 * 0 3841 1944 2690 L 41 3616 * * 3455 6232 4593 4309 3907 3126 3515 * 4449 3792 3587 5110 4036 4200 4176 * 4250 41 150 3336 * 2247 341 1865 463 3758 1891 3034 A 42 3636 6380 3475 5338 * 4454 5363 * 4109 3620 * 3260 3923 2556 * 2650 5128 4174 * * 42 30 5587 * 0 * 2168 363 3757 1000 2844 A 43 4814 * 3482 4787 * 5651 4125 6352 2772 5387 * 2639 2786 6369 * 3198 4568 4874 * 3716 43 70 5458 5347 2120 377 1829 477 3756 1204 2662 D 44 4536 * 1122 3024 * 5417 5824 * * * * 3163 3551 6275 * 3940 5984 * * 4551 44 174 3901 4417 1825 478 1267 775 3946 1608 2566 S 45 3941 * 4412 3273 5991 3301 * 4484 * 4367 * 3571 4418 2297 3220 3963 3871 * * * 45 59 * 4649 * * 933 1070 3886 0 2587 A 46 3550 * 5407 3087 4782 * * 4738 3524 3330 * 5424 5551 3048 4360 2275 5611 4673 * 4936 46 111 4397 5242 0 * 2303 327 3988 1412 2207 Y 47 * 6379 * * 2749 5408 * 5616 2243 * * 4747 4760 5365 5073 3004 4680 * * 1774 47 67 4455 * 2585 263 1281 765 3957 1203 2166 D 48 * * 1066 2534 * * * 5759 4847 * * 3046 * * 5660 2684 * * * * 48 0 * * * * * 0 3998 0 1861 Q 49 5118 * 6168 1210 * * 5660 4151 * * 4280 * 4984 2653 * 5091 3193 3876 * * 49 0 * * * * 350 2216 3998 0 1861 K 50 * * * 3615 * * * * 578 * * 4877 * 2817 * * 4820 4750 * * 50 0 * * * * 0 * 4079 0 1000 N 51 * * * * * * * * 5182 * * 542 * * * 3221 2486 * * * 51 0 * * * * * * 4197 0 0 I 52 * * * * * * * 687 * 2454 * * * 4796 * * 5219 2906 * * 52 82 5176 5182 0 * * * 4197 1000 0 R 53 * * * * * * * * 1881 * * 4771 * * 633 4809 * * * 6446 53 0 * * * * 0 * 4151 0 1000 R 54 * * * * * * * * 4495 * * * * * 65 * * * * * 54 0 * * * * * * 4208 0 0 R 55 * * * * * * * * * * * * * * 0 * * * * * 55 0 * * * * * * 4208 0 0 V 56 * 5236 * * * * * 2722 * * * * * * * * 5444 324 * * 56 0 * * * * * * 4208 0 0 Y 57 * * * * * * * * * * * * * * * * * * * 0 57 0 * * * * * * 4208 0 0 D 58 * * 0 * * * * * * * * * * * * * * * * * 58 0 * * * * * * 4208 0 0 A 59 592 4829 * * * * * 6051 * * * * * * * 5286 * 1939 * * 59 0 * * * * * * 4208 0 0 L 60 * * * * 4933 * * 2184 * 450 * * * * * * * 6051 * * 60 0 * * * * * * 4208 0 0 N 61 * * * * * * * * * * * 33 * * * 5459 * * * * 61 0 * * * * * * 4208 0 0 V 62 * * * * * * * * * * * * * * * * 5459 33 * * 62 0 * * * * * * 4208 0 0 L 63 * * * * 3226 * * * * 670 1919 * * * * * * * * * 63 0 * * * * * * 4208 0 0 M 64 * * * 4614 * * * 1592 4565 3047 1678 * * 5004 4575 5145 * 4313 * * 64 0 * * * * * * 4208 0 0 A 65 337 * * * * 5279 * * * * * * * * * 2455 * * * * 65 0 * * * * * * 4208 0 0 M 66 2412 * * * * * * 3433 * 2341 1759 * * * * 3662 5145 3066 * * 66 0 * * * * * * 4208 0 0 N 67 * * 2901 3797 * 1633 * * 3417 * * 2043 * 6497 3645 * 4495 * * * 67 0 * * * * * * 4208 0 0 I 68 * * * * * * * 829 * 2714 6051 * * * * * * 2036 * 5279 68 0 * * * * * * 4208 0 0 I 69 * * * * * * * 546 * 2819 * * * * * * * 2529 * * 69 0 * * * * * * 4208 0 0 S 70 4174 * 3260 2445 * 4495 * * 4287 * * * * 4310 3573 2434 2581 4026 * 6262 70 39 5236 * 2322 322 * * 4208 1000 0 K 71 * * * * * * * * 198 * * * * * 2963 * * * * * 71 38 5279 * 0 * * * 4208 1000 0 E 72 * * 1965 1718 * 5236 * * 3611 * * 4095 * 5286 5200 2468 5899 5459 * * 72 59 4650 * 1585 585 * * 4208 1129 0 K 73 4622 * 4829 * * 2001 * * 867 * * 3404 * 5880 6083 * * * * * 73 0 * * * * * * 4208 0 0 K 74 * * * * * * * * 85 * * 5279 * 5004 * * * * * * 74 0 * * * * * * 4208 0 0 E 75 5932 5043 4061 2034 * * * 5114 2650 3402 5338 2716 * 4380 4063 4460 5816 5758 * * 75 29 5664 * 0 * * * 4102 1000 0 I 76 * * * * * * * 480 * 3233 4620 5536 * * * * * 3391 * 5709 76 0 * * * * * * 3941 0 0 K 77 * * * * 5977 * 5908 2750 2114 6246 * 4752 * 5516 1631 4695 3695 4316 * 5224 77 0 * * * * * * 3890 0 0 W 78 * * * * * * * * * * * * * * * * * 4724 127 4429 78 0 * * * * * * 3487 0 0 I 79 3969 * * 4670 5340 * 5307 2220 2399 6222 4421 4350 * 3272 3670 * * 2722 * * 79 0 * * * * * * 3487 0 0 G 80 * * * * * 0 * * * * * * * * * * * * * * 80 0 * * * * * * 3335 0 0 L 81 * * * * 4127 * * 2834 * 366 * * * * * * * * * 5246 81 0 * * * * * * 3165 0 0 P 82 * * * * * * * * * * * * 0 * * * * * * * 82 0 * * 0 * * * 2360 0 0 //