HHsearch 1.5 NAME d1cf7a_ FAM FILE d1cf7a_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1cf7a_.a3m DATE Wed Mar 10 06:29:01 2010 LENG 67 match states, 67 columns in multiple alignment FILT 104 out of 187 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4654 2.3792 SEQ >ss_dssp CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC >sa_dssp EEEEECDDDBDEDADDCBEEDEECDADBDDACEEBEDCECDDBDCBBEECCEEDDBDEDEEDBACDE >ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEC >ss_conf 9412468999999999974189982509999998486621018889988643234522358842109 >Consensus sRxekSLxxLtxkFlxlxxxxxxxxvxLxxaaxxLxvxxkRRiYDIxNVLExiglixKxxknxxxWx >d1cf7a_ SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWK >UniRef50_C3Y2E5(108-142:159) Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3Y2E5_BRAFL E=0.0002 s/c=1.33 id=36% cov=54% SRRDKSLGAMSQKFIMLFLASNVKDISLETAAKVL-------------------------------- >UniRef50_B8BWH6(219-290:493) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BWH6_THAPS E=2e-14 s/c=1.11 id=32% cov=97% -RKDKSLSVLCQSFMELYRNAPPCtegqdngaIIEICELSTHLDVK-RRRIYDIINIMEALNIVSRMKKNTYRW- >UniRef50_A2FQN4(46-98:266) Putative uncharacterized protein n=2 Tax=Trichomonas vaginalis RepID=A2FQN4_TRIVA E=3e-05 s/c=0.94 id=24% cov=81% ------------KFLDYCNSNGEVSIKITDVCDKFGF-QRRRFYDLASILQAFGILEKSNMDTVKW- >UniRef50_Q4SD06(245-304:441) Chromosome 14 SCAF14645, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4SD06_TETNG E=3e-10 s/c=1.10 id=33% cov=91% -----SLAERLRRFLELMLASPDHLVDVRRLMAGTESSTD-RMDDITGVLEDIRLIEKQSAHRFKW- >UniRef50_A8BQ51(20-77:422) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BQ51_GIALA E=2e-05 s/c=0.86 id=35% cov=82% ---------LTRKFFAIACNHEEPfGFTIKEVCDKLAI-ESRRLYDLINVLEALGIIIKQQGPHY--- >UniRef50_A2DUK2(14-77:241) Putative uncharacterized protein n=2 Tax=Trichomonas vaginalis RepID=A2DUK2_TRIVA E=5e-07 s/c=0.87 id=32% cov=97% -RRQDSFTASTHKLIHYCSSDKNGVYSLNKLCTKLGFHQ-RRFYDVINVLNTVGFCTKRDSTKLQW- >UniRef50_A2F7K8(18-77:224) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2F7K8_TRIVA E=1e-05 s/c=0.85 id=25% cov=91% -----SLKSVAEKVIGFFNSQISTIFDINDVSIKLNV-PKRRLYDVLNIMAPLGLVGRNGRGRYIW- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 4743 * * * * * * * * * * * * * * 441 2144 * * * 1 0 * * * * * * 3604 0 0 R 2 * * * * * * * * 3863 * * * * * 103 * * * * * 2 0 * * * * * * 4184 0 0 H 3 4614 6595 6285 6712 3899 * 7270 * 1438 6271 5939 * * 4506 2551 2810 5772 6695 * 3849 3 0 * * * * * * 4225 0 0 E 4 * * 1565 1185 * 5777 * * 5832 * * 5322 * 3481 4684 * 5482 6536 * * 4 0 * * * * * * 4225 0 0 K 5 4131 * 4774 * * 6562 5438 * 946 5958 * 3619 * 5280 4139 3652 3809 5448 * * 5 0 * * * * * * 4236 0 0 S 6 4790 * * * * 5084 * * * 6182 * * * * * 180 4729 * * * 6 0 * * * * * * 4490 0 0 L 7 * * * * 4952 6047 * * * 114 6102 * * * * 6192 * * * * 7 0 * * * * * * 4515 0 0 G 8 3234 * * 4276 * 1126 5656 * 5598 4766 * 6254 6189 4849 6041 3721 4215 4331 5051 5612 8 0 * * * * * * 4498 0 0 L 9 4364 6780 5696 3370 5638 * * 3235 6305 1476 4358 5700 * 4798 4393 3948 6929 3395 * 6918 9 20 6212 * 1000 1000 * * 4498 1000 0 L 10 * * * * * * * 3675 * 499 3309 * * * 5104 5060 5528 4953 * * 10 0 * * * * * * 4530 0 0 T 11 3456 2226 * * * * * * * 4073 * 6374 * * * 2612 1156 6454 * * 11 0 * * * * * * 4543 0 0 T 12 5141 * 5705 3657 * * 4768 4462 2339 6354 * 6415 7325 1880 2188 5232 4792 6706 * * 12 0 * * * * * * 4561 0 0 K 13 6427 * * * * 4093 * * 1258 * 6328 3297 * * 1617 4605 5904 * 6199 * 13 0 * * * * * * 4590 0 0 F 14 * * * * 206 * * 5726 * 4042 * * * * * * * 4226 * * 14 0 * * * * * * 4612 0 0 V 15 6831 7173 * * 5787 * * 2115 * 1405 3260 * * * 6505 6367 * 2118 * * 15 10 7229 * 2000 415 * * 4612 1000 0 S 16 2868 * 4032 3182 * 4842 4094 5756 2870 * 3986 3951 * 3126 4353 3316 4692 7290 * 7337 16 14 6665 * 0 * * * 4612 1000 0 L 17 5756 6904 * 5111 4609 * 5227 4584 5948 704 4384 * * 7086 4804 * * 4931 * 3627 17 10 * 7206 * * * * 4612 0 0 L 18 4896 3993 * * 2024 * * 3624 * 2205 3569 6156 7220 7139 * * 5049 4272 * 2594 18 17 6429 * 2000 415 * 0 4613 1000 1000 Q 19 5931 5777 4953 4762 6374 5249 * 5165 3314 2170 5742 3259 3525 3273 3150 4032 6648 * 6629 * 19 17 * 6407 * * 0 * 4613 0 1000 E 20 3364 4589 3462 2387 * 4875 * * 5434 * 6716 3305 * 3635 4148 2569 5173 3813 * 7110 20 28 6655 6700 3170 170 978 1023 4619 1000 1576 A 21 2566 * 4882 4944 5798 5260 5778 * 6114 * 6204 3830 6459 4448 5010 1440 4429 * * 3311 21 27 5735 * 2699 241 0 * 4611 1668 1511 K 22 5205 * 4992 2753 * 4374 * 5697 3706 * * 4396 1356 4292 4889 3299 5756 7410 * * 22 73 4961 5873 3652 120 * * 4612 1683 0 D 23 4586 6008 2023 3178 * 3949 5337 5705 3867 6425 6567 3197 4005 6976 6922 4071 4211 3949 * 5558 23 0 * * * * 0 * 4605 0 1097 G 24 * 3926 4612 4416 * 1490 4698 * 4765 5531 5695 3383 4031 4175 4677 4174 4613 5231 * * 24 78 4757 6014 1496 631 * * 4612 1885 0 V 25 6104 4930 5029 3934 * 5113 5866 2664 * 2980 5529 4589 * * 4981 3093 2720 2624 * * 25 33 5465 * 2605 259 0 * 4612 1658 1000 L 26 5474 5702 6441 6009 4358 * * 2170 * 2384 5341 * * * * 5100 * 1432 6689 4858 26 15 6552 * 3459 138 * * 4708 1000 0 D 27 * 6070 1450 4431 * 5403 6857 6897 5215 6665 * 3466 4575 6841 * 2021 3478 6919 * 6699 27 8 7441 * 1000 1000 * * 4708 1000 0 L 28 * * * * 6467 * * 2024 * 639 6516 6099 * * 5737 * * 4145 * * 28 12 6919 * 0 * * * 4708 1000 0 K 29 5571 4878 1989 3186 * 5985 6717 6381 4420 * * 1825 * 6204 3852 3702 5209 5666 6586 * 29 19 * 6277 * * * * 4708 0 0 L 30 3772 * 2943 2043 * * 5417 4637 2991 4439 6868 6619 * 4011 4072 3959 4357 4242 6325 * 30 9 7299 * 1000 1000 0 * 4700 1000 1000 A 31 965 6099 6552 * * * 5737 3681 5307 2932 6295 * * * * 4505 5016 3037 * * 31 0 * * * * * * 4708 0 0 A 32 981 3872 * 4547 6138 * * * 6498 3394 5109 * * * * 2992 3927 4586 * * 32 36 6573 6138 3170 170 * * 4708 1000 0 D 33 2893 * 3017 3148 * * * 4543 2333 6382 5980 4903 * 4058 4754 3733 3162 5215 * 6022 33 0 * * * * * 0 4594 0 1000 T 34 3535 7286 * 2863 * 4081 5700 4459 2179 5481 5127 5821 * 4697 3469 4908 3418 3454 * 6700 34 0 * * * * * 0 4594 0 1000 L 35 6584 * * * 4673 * * * * 380 4935 * * * 6286 * 4081 3690 * * 35 117 3815 7140 2908 206 * 0 4594 2044 1000 A 36 2944 5816 3890 3885 * 1508 5404 4460 4588 4285 * 3595 6156 * 4569 3952 * * * * 36 125 4245 5038 3025 189 0 * 4597 1998 1557 V 37 5361 * * 6831 3973 6097 * 4158 4124 4642 5526 6667 * 6337 3717 4213 3403 1099 * * 37 815 * 1213 * * 0 * 4604 0 1000 R 38 6233 * 3579 4734 5569 4228 3173 5484 2108 * 5724 4389 * * 2156 4103 3705 * * * 38 759 2709 1966 1398 688 0 * 4347 2428 4062 Q 39 6669 * 5121 1905 * * 6424 * 3878 * * * 3128 1639 4976 3921 3843 6396 * * 39 53 * 4794 * * 0 * 4692 0 3205 K 40 * * 4282 6821 * * * 5882 1089 6814 * 5760 * * 1466 5762 * 4475 * * 40 231 3080 5085 2747 233 0 * 4548 2350 1449 R 41 * * * * * * * * 4532 * * * * * 64 * * * * * 41 0 * * * * 0 * 4770 0 1000 R 42 * * * * * * * * * 5612 * * * * 30 * * * * * 42 30 * 5612 * * * * 4828 0 0 I 43 * * * * 3721 * * 1220 * 1483 4516 * * * * * * 3418 * * 43 0 * * * * 0 * 4812 0 1000 Y 44 * * 4054 * * * * * * * * * * * * * * * * 90 44 0 * * * * * * 4828 0 0 D 45 * * 0 * * * * * * * * * * * * * * * * * 45 0 * * * * * * 4828 0 0 I 46 * * * * * * * 522 * 4809 * * * * * * * 1900 * * 46 0 * * * * * * 4828 0 0 T 47 2270 * * * * * * 3046 * 5058 5678 * * * * * 1396 2047 * * 47 0 * * * * * * 4828 0 0 N 48 * * 4997 * * 5114 * * * * * 155 * * * 4585 * * * * 48 0 * * * * * * 4828 0 0 V 49 4898 6455 * * * * * 2130 * * * * * * * * 6176 488 * * 49 0 * * * * * * 4828 0 0 L 50 * * * * 4356 * * * * 167 4052 * * * * * * * * * 50 0 * * * * * * 4828 0 0 E 51 4828 6556 7095 550 * * * 6744 5191 * * 5818 * 5025 5984 3571 5393 5542 * 4898 51 0 * * * * * * 4828 0 0 G 52 2643 * 4054 * * 1439 * * * * * * 5655 * * 1476 4986 * * * 52 0 * * * * * * 4828 0 0 I 53 5163 * * * 5878 * * 1367 * 1591 4524 * * * * * 7244 2431 * * 53 0 * * * * * * 4828 0 0 G 54 6346 * 4299 4317 * 1076 3924 * 3898 * 5871 3704 * 4336 3571 4271 * * * * 54 0 * * * * * * 4828 0 0 L 55 4905 * * * 4211 * * 3460 * 711 4228 * * * * * * 2918 * 5303 55 0 * * * * * * 4651 0 0 I 56 6415 4735 * * 5952 * * 996 * 3551 4804 * * * * * 5042 1828 * * 56 30 5604 * 2372 310 * * 4651 1511 0 E 57 5295 * 6113 1453 * 4409 6246 5708 2835 * * 6044 * 3865 4587 3654 2894 4793 * * 57 0 * * * * * * 4651 0 0 K 58 * * * * * * * * 493 * * * 5936 * 1872 * * * * * 58 47 4957 * 2644 252 * * 4651 1718 0 K 59 6325 5707 6552 4470 6702 4882 * 3595 2407 3778 4841 5251 * 3615 3201 4556 2996 3768 5481 6681 59 28 5699 * 2148 369 * * 4800 1301 0 S 60 2634 6647 5177 6244 * 2630 5089 * 4877 6990 * 3623 6701 4728 3752 1649 5456 6524 * * 60 18 6340 * 2322 322 * * 4837 1000 0 K 61 4191 6027 5019 * * 5695 6648 6597 645 6464 5762 * * 5889 3654 5177 5956 4320 * * 61 0 * * * * * * 4837 0 0 N 62 6206 6653 4289 * * 4580 3831 * * * * 854 3411 6251 * 3713 3703 * * * 62 0 * * * * * * 4713 0 0 S 63 3364 5084 * 5854 * * 3320 * 2268 4938 6799 3470 * 3417 3391 3280 3619 5434 * 5647 63 15 6577 * 0 * * * 4811 1000 0 I 64 6318 5490 * * 2800 * * 2265 * 4923 5844 * * * * * * 2353 * 1444 64 0 * * * * * * 4805 0 0 Q 65 5688 6107 * 6145 * * 5696 4780 1804 5478 6448 6815 * 2520 2347 3606 3571 5059 * * 65 0 * * * * * * 4672 0 0 W 66 * * * * * * * * * * 5365 * * * * * * * 35 * 66 0 * * * * * * 4633 0 0 K 67 * * * * * * * * 1122 * * * * 3537 1138 * * * * * 67 0 * * 0 * * * 3034 0 0 //