HHsearch 1.5 NAME d1cdwa2 FAM FILE d1cdwa2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1cdwa2.a3m DATE Tue Mar 9 22:11:17 2010 LENG 81 match states, 81 columns in multiple alignment FILT 105 out of 168 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.0 EVD 0.4107 0.4627 SEQ >ss_dssp CCEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHHHHHHTTBC >sa_dssp ECECECDBEBDADADAACEDCEECBDCDDEEDEBACBEBDEBEACACACDDADACACDAEDEDCBEDACEDADDCADEBEE >ss_pred CEEEEEECCCCCCHHHHHHHHCCCCEECCCCCCEEEEEECCCEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHCC >ss_conf 979999749840499999721014337721185699993898099999689769999328989999999999999998549 >Consensus NvvasxxlxxxidLxxlaxxxxxnxxYePexfpglixRxxxpxxtxlIFxsGkixitGaksxexxxxaxxxixxiLxxxrk >d1cdwa2 NMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK >UniRef50_B9LVZ5(6-84:123) TATA-box binding family protein n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LVZ5_HALLT E=3e-08 s/c=0.76 id=27% cov=95% NMVGSGSLNVELDLETLAEEIGQpQAQYNPDKYPGMYLRFEEEAPLITVYRTGKYIITGPTSEEELFDLRERFLRFL----- >UniRef50_A8BYR1(115-197:200) TATA-binding protein-like factor n=3 Tax=Giardia intestinalis RepID=A8BYR1_GIALA E=4e-06 s/c=0.63 id=22% cov=98% -ITCLTDLGHGIRLDAAAAATIsvfSSAMYQPEIMPSLqvVFKIAERNICCSVFADGQVTIVGARNIFDARDVITKLYEGLFDY-- >UniRef50_B5DW52(332-410:642) GA26713 n=2 Tax=pseudoobscura subgroup RepID=B5DW52_DROPS E=3e-18 s/c=1.17 id=28% cov=99% -VLGTCRMPWDINIVNFSKKHPENAKQDPEMHWCVTYKMQMPKATLKIFTTGSITVMAAR-VNLVESAIEHIYPLVREFRK >UniRef50_P32086(54-116:228) TATA-box-binding protein n=2 Tax=Plasmodium falciparum RepID=TBP_PLAFA E=4e-10 s/c=1.05 id=28% cov=79% NIISSANLCIDINLRLVAVS-IRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTGTRTKKD----------------- >UniRef50_Q237D3(18-104:231) TATA-box binding protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q237D3_TETTH E=6e-16 s/c=0.98 id=27% cov=96% NVVATIKMirqdgnsskqKQTFDLQEIAQK-CRNTQYNPKRFPAVFMRIKDPKATGLIYSSGNMTIVGTRSTNESQTAAERIFGIIKK--- >UniRef50_Q3LVY6(113-192:204) TATA binding protein of transcription factor IID n=2 Tax=Chlorarachniophyceae RepID=Q3LVY6_BIGNA E=3e-14 s/c=0.99 id=27% cov=100% NIFATMDYKVPINLMQIHIAFPRITKHEPEVHRGLLYYPFDTKLLVTIYASGKITITGAKSMSILERVRNNLTNMILQMR- >UniRef50_C5KGY5(127-208:213) TATA-box factor binding protein, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KGY5_9ALVE E=9e-15 s/c=0.99 id=21% cov=100% NILATYDLGSTMNLLGLsrAPAFANVVAYEPSRYPAVVLRDPGRGVTVDVFSTGRVSMKGKTSIENLCDALNEMLPHILDYR- >UniRef50_Q9VQE6(213-293:331) CG9879 n=7 Tax=Sophophora RepID=Q9VQE6_DROME E=6e-13 s/c=0.93 id=23% cov=100% NIVnASFSMPFKIDLDLMSRRHVVEVAQNRSRRPFITYTTENLGVRFAVFPTGFVLVLHSTSHCETREAIANFLPILAKLK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 0 * * * * * * * * 1 0 * * * * * * 5463 0 0 M 2 * 6939 * * * * * 1205 * 5644 3900 * * * * * * 1123 * 6353 2 0 * * * * * * 5659 0 0 V 3 6401 * * * 5878 * 6012 3764 * 3054 3638 * * 4657 * * 5003 712 * * 3 103 3857 * 0 * * * 5861 2122 0 G 4 816 2997 * * 6600 2387 * * * 6320 * * * * * 5072 6960 4541 6400 * 4 11 7101 * 2000 415 * * 5879 1000 0 S 5 * 6552 6380 * 5282 6354 5478 * 4711 5651 6248 4844 * 6047 5472 1234 1754 4281 * * 5 0 * * * * * * 5883 0 0 C 6 2513 2724 * * 2319 3066 * 4239 * 5010 5482 * * * * 7142 4368 2879 6645 4449 6 0 * * * * * * 5941 0 0 D 7 * 4396 1705 6130 * 7182 5034 * 4238 * 6826 2826 * 5222 3553 2501 4214 6297 * 4794 7 10 * 7120 * * * * 5943 0 0 V 8 4945 4637 * * 5139 * * 3329 * 1267 2676 * * * * 6106 5054 2680 * 5224 8 12 6913 * 3322 152 * 0 5947 1000 1000 K 9 5232 5589 4247 5719 7000 1546 5376 * 3327 * * 3849 2181 6280 3940 5057 6795 * * * 9 0 * * * * * 0 5947 0 1000 F 10 6081 2824 5623 6820 1823 5132 5048 4475 5290 5630 6618 7311 * 4626 4188 3971 4606 3538 4844 4468 10 13 6795 * 3700 115 0 * 5947 1000 1000 P 11 4178 6058 4500 2393 * 3756 4020 6419 3244 5583 * 3529 2233 5098 5178 5342 4624 * * * 11 0 * * * * * * 5956 0 0 I 12 * * * * 4281 * * 966 * 1855 4866 * * * * * * 2988 * * 12 0 * * * * * * 6029 0 0 R 13 6724 6873 1148 5419 * * 6151 * 4789 6435 6691 2081 5929 * 2746 4876 * * * * 13 0 * * * * * * 6029 0 0 L 14 * * * * * * * 3666 * 188 * * 6177 * * * * 5071 * * 14 0 * * * * * * 6029 0 0 E 15 4079 * 2925 1746 * 5939 4770 * 3648 5306 4959 3747 5621 5711 3188 5459 5638 4955 * 5486 15 16 * 6463 * * * * 6029 0 0 G 16 3214 * 6655 2417 * 3835 6876 6813 2655 4051 5631 4777 5761 3228 3928 5050 4144 5882 5046 7148 16 19 * 6260 * * 0 * 6016 0 1000 L 17 5199 6792 * * 3845 * * 1848 * 1059 6026 * * * * * * 3046 * * 17 86 4801 5507 518 1729 0 * 6045 2051 1408 V 18 949 6129 * 6721 * * 4208 5217 5424 5468 * 4584 * 6633 * 2738 5084 3688 * 5473 18 58 6848 5032 1000 1000 0 * 6017 1000 1641 L 19 3456 5253 5094 3091 4393 * 5221 4195 3529 2996 4497 5769 6068 4282 4337 3811 5539 3457 * 4934 19 164 * 3217 * * 0 * 6032 0 2217 T 20 2851 * 3311 2846 * 5115 4585 5060 2759 3977 6618 4095 6368 7055 3498 3864 4514 6931 * 6339 20 248 5831 2830 1000 1000 327 2303 6009 1380 3298 H 21 5481 6703 6382 6536 3488 6482 2139 3719 * 2735 4897 4280 * 6214 5004 5130 3166 * 5044 3445 21 177 5618 3398 0 * 0 * 5974 1426 3657 Q 22 4136 5755 * 5508 * 3795 * 3957 4252 2626 * * 2718 6952 3092 2780 4691 3998 * 5184 22 225 4873 3181 1022 978 190 3019 6076 2101 3138 Q 23 5770 * 2906 2661 6546 5286 6500 5181 3863 4745 5974 5201 5058 4313 2263 3863 5047 4093 6335 7068 23 113 4958 4532 2072 392 108 3797 5999 1960 3550 F 24 6854 6634 4980 4269 3255 5840 4324 4892 * * * 1075 * 4043 6349 4882 * 4156 * 4205 24 41 5152 * 1380 699 0 * 6109 2291 2387 S 25 1863 2902 * * 6144 6780 * 3853 * * 6616 * * * * 2898 2900 2181 * * 25 0 * * * * * * 6122 0 0 S 26 4632 * 3703 1475 5951 5858 * 4790 4046 6138 4582 5648 * 4196 4707 3002 3966 5565 * 6120 26 0 * * * * * * 6122 0 0 Y 27 6273 * * 5858 4089 * 6137 * * 6297 * * * 5075 * 5976 * * * 254 27 0 * * * * * * 6122 0 0 E 28 6977 * 2572 1307 * * 5334 * 4239 * 6154 1976 * 5792 5112 5858 * 6731 * * 28 30 * 5588 * * * * 6122 0 0 P 29 * * * * * * * * 4711 5846 * * 282 * 3537 6620 5276 * * * 29 21 6119 * 0 * 0 * 6103 1000 1678 E 30 5323 6120 3640 846 * 5678 * 6540 4016 6412 * 6154 * 5238 3889 3157 * * * * 30 25 5858 * 1585 585 * * 6122 1000 0 L 31 7144 * * 4908 * 6977 5443 3707 3189 2934 6160 4729 * 2418 2080 5268 4311 4452 * 6144 31 95 * 3973 * * * * 6122 0 0 F 32 6547 * * * 926 * 3171 4687 * * 5807 5506 * 5246 4900 4085 * 7357 * 2751 32 0 * * * * 551 1655 6036 0 2382 P 33 3959 6126 * * * 5084 3797 * 7207 * * 3703 690 * 6093 3883 * 5657 6145 * 33 0 * * * * 0 * 6095 0 1247 G 34 2330 4359 * * 4127 874 6369 * 6827 * 5696 * 6154 * * 4149 7001 * * 5000 34 25 5858 * 0 * * * 6122 1000 0 L 35 3299 4271 * * * 6144 * 3755 * 1062 4796 * * * * * * 2039 * * 35 26 5792 * 1000 1000 * * 6122 1000 0 I 36 * 6651 * * 4567 * * 1620 5614 4932 6651 * * * 3905 6731 2731 1882 * 4027 36 16 6461 * 1000 1000 * * 6122 1000 0 Y 37 * 5584 * * 3154 * 5372 3237 * 2748 3046 * * 6592 * * * 3203 5674 1608 37 0 * * * * * * 6122 0 0 R 38 * * 6103 5931 * * * 5956 1911 * * * * * 628 * 5300 * * 6120 38 24 5901 * 2430 296 * * 6127 1495 0 M 39 * 6514 6052 7096 3335 5693 * 2238 * 1803 3224 5642 4357 5686 6630 5062 3732 6968 * 5006 39 66 4486 * 2082 389 * * 6127 2835 0 I 40 4466 6042 4070 3402 5508 5214 5059 7045 3319 5175 6279 4476 3492 3735 2787 4461 3630 4239 6820 5931 40 76 4291 * 1745 511 * * 6127 2612 0 K 41 5840 * 2258 2453 6630 3802 6103 5880 3165 6604 6142 2825 7152 5997 4017 4175 4675 5537 * * 41 70 5692 5166 2226 347 * * 6127 1628 0 P 42 * * * 6555 * * 5265 5060 5925 4131 5165 3856 785 * 4911 4097 3809 * 5689 * 42 38 5268 * 1964 427 0 * 6093 1800 1933 R 43 4881 4526 7372 5669 * 3216 5858 * 1384 * * 4767 * 4418 3359 3256 4245 6630 * 4624 43 93 4008 * 3657 119 * * 6127 2765 0 I 44 1991 3310 * * * 5734 * 2842 * 4112 5363 * 4161 * 6419 4614 3020 2510 * * 44 16 6546 * 5285 37 * * 6121 1000 0 V 45 3645 5861 * 5560 * * * 6802 3849 4179 * 6038 * * 4721 3084 1300 2725 * 5670 45 0 * * * * * * 6121 0 0 L 46 2708 3969 * * 3293 5023 * 2787 * 1837 5963 * * * * 5390 5809 2702 * 6154 46 0 * * * * * * 6121 0 0 L 47 3335 * 6047 * * * 5454 5766 3621 1157 4444 6484 * 5614 5030 3505 3076 * * * 47 14 * 6714 * * * * 6121 0 0 I 48 6675 * * * * * * 1113 * 2680 4661 * * * * * 5883 1664 * * 48 0 * * * * 0 * 6121 0 1000 F 49 * * * * 532 * 4227 * * * * * 5891 * 6619 * 6154 * 4658 2522 49 0 * * * * * * 6121 0 0 V 50 3353 * * 6566 5606 4815 6646 * 3841 * * 4249 3788 6026 2673 1762 4263 3162 * * 50 0 * * * * * * 6121 0 0 S 51 6566 * 5861 * * 5490 * * 6427 * 5926 2751 * * * 957 1954 * * * 51 0 * * * * * * 6121 0 0 G 52 * * 6038 * * 22 * * * * * * * * * * * * * * 52 0 * * * * * * 6121 0 0 K 53 6265 * * * 4396 * * * 664 * * 4824 6427 5861 3629 3329 * 6619 * 4216 53 0 * * * * * * 6121 0 0 V 54 * 5899 * * 4814 * * 1573 * 3055 2858 * * * * * * 1690 * 4531 54 0 * * * * * * 6121 0 0 V 55 5877 * * * 6041 5588 * 2598 * 4709 4172 4589 * 4315 * 3922 2824 1619 6467 4261 55 0 * * * * * * 6047 0 0 L 56 5391 2471 * * 4807 5074 * 1593 * 3366 4390 * * * * * 6449 2042 * * 56 0 * * * * * * 6032 0 0 T 57 4557 7012 * * * * * 4481 6075 3584 4028 5538 5372 5377 5867 4851 915 3417 * * 57 41 * 5142 * * * * 6032 0 0 G 58 6023 * 6341 * 6154 175 5093 * 6596 4940 * * * * * * * * * * 58 17 6375 * 2585 263 0 * 6023 1000 1896 A 59 937 3188 * * 6055 3821 * 6266 6075 6619 * * 5567 * * 2970 4270 4522 * * 59 32 * 5521 * * * * 6032 0 0 K 60 3497 * * 6248 * * * * 1276 5148 * 4589 6498 6591 2047 6008 3034 * * 6097 60 21 * 6094 * * 0 * 6005 0 1568 V 61 6737 * 4667 5264 * 4646 * * 4776 * 6006 3242 * 4442 6106 902 3007 7053 * * 61 0 * * * * 0 * 6008 0 1000 R 62 * * 5584 2164 * * 4446 3496 3883 3837 3779 5624 3427 4738 5181 7005 4995 2508 * 5811 62 0 * * * * * * 6030 0 0 A 63 3698 5997 2937 1251 5779 * 6917 * 4727 5570 * 3967 6876 4938 4457 3256 5964 * * * 63 0 * * * * * * 6030 0 0 E 64 5321 * 1693 1668 * 5154 3958 5065 5173 5089 6860 5362 * 4683 * 4070 5018 6752 * * 64 0 * * * * * * 6007 0 0 I 65 1978 5582 * * 5495 5315 * 2756 * 1854 5508 * * * * 5205 3271 3312 * * 65 0 * * * * * * 5973 0 0 Y 66 5351 5423 5802 2983 6468 6407 3990 5517 2219 5190 5507 3873 * 3715 2437 6780 6557 5781 6656 4086 66 0 * * * * * * 5972 0 0 E 67 3684 * 3444 2581 6336 * * 5566 2896 3662 6579 4534 6098 3584 2985 3857 4431 6501 * 6376 67 0 * * * * * * 5970 0 0 A 68 728 * * * * 3405 * 4363 * 5353 * * * * * 3611 5910 2941 * * 68 0 * * * * * * 6028 0 0 F 69 2824 5051 * * 3194 5909 * 2045 * 3069 5225 * * * 4520 5140 * 2314 6196 5162 69 0 * * * * * * 6010 0 0 E 70 3179 6602 3208 2301 6346 6073 * * 3239 5252 * 3203 * 4503 2650 4333 4821 * * 6399 70 0 * * * * * * 5984 0 0 N 71 4566 6183 4702 3650 4344 5969 4574 5399 2107 4411 * 3528 * 4671 2786 4838 5020 6534 5581 4395 71 30 * 5613 * * * * 5992 0 0 I 72 4070 6717 * * 3339 * * 1157 * 2449 3923 * * * * * * 3247 * 5090 72 23 5962 * 1000 1000 * 0 5908 1000 1553 Y 73 2879 6048 * * 4640 * 6309 3530 4596 2097 5744 * * 5007 * * 5483 2981 * 2085 73 0 * * * * * 0 5760 0 1553 P 74 6277 * 3532 3693 * 6201 * * 3099 * * 4579 1072 6353 2822 5512 * * * * 74 0 * * * * 936 1067 5762 0 1553 I 75 6306 * * 4465 4472 5496 5677 1343 5211 2663 4180 * * 6785 5292 * 5113 3163 * 4448 75 0 * * * * * 0 5758 0 1000 L 76 * * * * 4698 * * 2588 * 607 * * * * * * * 2849 * * 76 0 * * * * * 0 5746 0 1000 K 77 3322 5374 6377 4477 3599 * * 4386 2663 3244 * 4647 * 3332 2674 6074 5976 5727 * 3649 77 0 * * * * * 0 5634 0 1000 G 78 5668 * 3033 1966 * 6232 * * 1998 6279 * * * 2352 3202 5568 * * * * 78 0 * * * * 0 * 5563 0 1000 F 79 5632 * * * 1381 * 3322 * * 3712 4814 5375 * * * 3830 * * * 1788 79 0 * * * * * * 5308 0 0 R 80 4762 * * 4876 * * * * 1555 * 4781 * * * 856 * * * * * 80 0 * * * * * * 4906 0 0 K 81 * * * * * * * * 0 * * * * * * * * * * * 81 0 * * 0 * * * 3670 0 0 //