HHsearch 1.5 NAME d1bmlc1 FAM FILE d1bmlc1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1bmlc1.a3m DATE Mon Mar 8 18:40:12 2010 LENG 112 match states, 112 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.0 EVD 0.3887 -1.3054 SEQ >ss_dssp CCSSCEEEEEEEEEESSSCCEECCCCCEEECCCCCEEEEHHHHHHHHHHHHTTTCCSGGGCEEEEEECTTCEEECTTCCEECCCTTCEEEECCSSCCCEE EEEEEEEEECCC >sa_dssp EEECABABADBCBCBDEEEEDCECDECDCDAEEDECDBCDEEBCECACECBDCECECEEDDCCCDCBCEDDDBCBEEEEDCEDDEECABDADBEEDCDAD BCCCBDACDEEE >ss_pred CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEECCCCCEECCCHHEEEEE ECCEEEEEEECC >ss_conf 9653199999866770479579999998885077311128999999999998865324330677753488735311130899536883340702003303 204289865069 >Consensus xxnxsxxvixvxGxVexTnqeixikxixxdlxsxxxklxKadLLkAIxxqlxxxxxxxxxxxexVDFaxDAxltxxxxxlyxAxxngSVxlxxxxiqeyl LsGHVilrxxxx >d1bmlc1 SVNNSQLVVSVAGTVEGTNQDISLKFFEIDLTSRPHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFL LSGHVRVRPYKE >UniRef50_B9DW72(43-148:286) PauA protein (Streptokinase) n=15 Tax=Streptococcus RepID=B9DW72_STRU0 E=6e-28 s/c=1.18 id=38% cov=93% --NKITFAINVDGFVEGSNQEILIRGIHHVLTDQNQKIvTKAELLDAIRHQMV--LLQLDYSYELVDFAPDAQLLTQDRRLLFANQNfeESVSL-EDTIQ EYLLKGHVILR---- >UniRef50_Q9ZFE3(42-142:400) Streptokinase n=1 Tax=Streptococcus dysgalactiae subsp. equisimilis RepID=Q9ZFE3_STREQ E=7e-28 s/c=1.23 id=36% cov=89% ----SNIVITVSGLVKDTNEEFHIKYVDLDLNSSI--LQKEQLLQAINYRIKQTFENKK--LKAVDFAKDARLTDWEENLYIANpSNGSVDLGKQGIKEY RLTGHVIL----- >UniRef50_C5WGK4(1-94:372) Truncated streptokinase n=1 Tax=Streptococcus dysgalactiae subsp. equisimilis GGS_124 RepID=C5WGK4_STRDG E=2e-27 s/c=1.31 id=42% cov=85% ----------MTGRVQETGQEVYIKFIDYDINTAVYS--KADLLKAVQHQLSSSRFTRQ--FQVVDFDKDARVTNRYGDLYIAGTDGSVNFGKDEVQQYL LSGHVILK---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 V 2 * * * * * * * * * * * * * * * * * 0 * * 2 0 * * * * * * 1000 0 0 N 3 * * * * * * * * * * * 0 * * * * * * * * 3 0 * * * * * * 1519 0 0 N 4 * * * * * * * * 1041 * * 960 * * * * * * * * 4 0 * * * * * * 1519 0 0 S 5 * * * * * * * 1599 * * * * * * * 578 * * * * 5 0 * * * * * * 1909 0 0 Q 6 * * * * * * * * * * * 1620 * 1537 * * 1599 * * * 6 0 * * * * * * 1909 0 0 L 7 * * * * 1599 * * 1620 * 1537 * * * * * * * * * * 7 0 * * * * * * 1909 0 0 V 8 1599 * * * * * * * * * * * * * * * * 578 * * 8 0 * * * * * * 1909 0 0 V 9 * * * * * * * 610 * * * * * * * * * 1537 * * 9 0 * * * * * * 1909 0 0 S 10 * * * * * * * * * * * 1599 * * * 1537 1620 * * * 10 0 * * * * * * 1909 0 0 V 11 * * * * * * * * * * 2050 * * * * * * 399 * * 11 0 * * * * * * 2131 0 0 A 12 1966 * 1961 * * * * * * * * * * * * 2025 2050 * * * 12 0 * * * * * * 2131 0 0 G 13 * * * * * 0 * * * * * * * * * * * * * * 13 0 * * * * * * 2131 0 0 T 14 * * * * 1961 * * * * 2025 * * * * 2050 * 1966 * * * 14 0 * * * * * * 2131 0 0 V 15 * * * * * * * * * * * * * * * * * 0 * * 15 0 * * * * * * 2131 0 0 E 16 * * * 963 * * * * 2025 * * * * 2050 * * * * * * 16 0 * * * * * * 2131 0 0 G 17 * * 2025 2050 * 963 * * * * * * * * * * * * * * 17 0 * * * * * * 2131 0 0 T 18 * * * * * * * * * * * * * * * 1961 428 * * * 18 0 * * * * * * 2131 0 0 N 19 * * * * * 2050 * * * * * 399 * * * * * * * * 19 0 * * * * * * 2131 0 0 Q 20 * * * 2025 * * * * * * * * * 407 * * * * * * 20 0 * * * * * * 2131 0 0 D 21 * * 1966 427 * * * * * * * * * * * * * * * * 21 0 * * * * * * 2131 0 0 I 22 * * * * 2025 * * 963 * * * * * * * * * 2050 * * 22 0 * * * * * * 2131 0 0 S 23 * * * * * * 2025 * * 1961 * * * * * 1966 * * * 2050 23 0 * * * * * * 2131 0 0 L 24 * * * * * * * 427 * 1966 * * * * * * * * * * 24 0 * * * * * * 2131 0 0 K 25 * * * * * * * * 428 * * * * * 1961 * * * * * 25 0 * * * * * * 2131 0 0 F 26 * * * * 1007 1961 * * * * * * * * * * * * * 2025 26 0 * * * * * * 2131 0 0 F 27 * * * * 1966 * * 1005 * * * * * * * * * 2025 * * 27 0 * * * * * * 2131 0 0 E 28 * * 1038 1966 * * 1961 * * * * * * * * * * * * * 28 0 * * * * * * 2131 0 0 I 29 * * * * * * 1961 1966 * 2025 * * * * * * * * * 2050 29 0 * * * * * * 2131 0 0 D 30 * * 428 * * * * * * * * * * * * * * 1961 * * 30 0 * * * * * * 2131 0 0 L 31 * * * * * * * 2050 * 399 * * * * * * * * * * 31 0 * * * * * * 2131 0 0 T 32 * * * * * * * * * * * 1038 * * * * 963 * * * 32 0 * * * * * * 2131 0 0 S 33 * * 1961 * * * * * * * * * * * * 995 2050 * * * 33 0 * * * * * * 2131 0 0 R 34 2050 * * * * * * * * * * * * 1961 1966 2025 * * * * 34 0 * * * * * * 2131 0 0 P 35 * * * * * * * 2025 * * * 1961 1966 * * * * 2050 * * 35 407 * 2025 * * * * 2131 0 0 H 36 * * * * * * 1585 * * * * * * 1563 * * * * * 1607 36 0 * * * * * 0 1851 0 1000 K 37 * * * * * * * * 574 * * * * * * 1607 * * * * 37 574 * 1607 * * 0 * 1851 0 1000 L 38 * * * * * * * 1599 * 578 * * * * * * * * * * 38 578 1599 * 0 * * 0 1909 1000 1000 E 39 * * * 1537 * * * * * * * * * 1620 * * 1599 * * * 39 0 * * * * 0 * 1909 0 1000 K 40 * * * * * * * * 0 * * * * * * * * * * * 40 0 * * * * * * 2131 0 0 A 41 407 * * 2025 * * * * * * * * * * * * * * * * 41 0 * * * * * * 2131 0 0 D 42 * * 1007 1961 * * * * * * * * * 2025 * * * * * * 42 0 * * * * * * 2131 0 0 L 43 * * * * * * * * * 0 * * * * * * * * * * 43 0 * * * * * * 2131 0 0 L 44 * * * * * * * * * 0 * * * * * * * * * * 44 0 * * * * * * 2131 0 0 K 45 * * 1961 * * * * * 1007 * * * * 2025 * * * * * * 45 0 * * * * * * 2131 0 0 A 46 0 * * * * * * * * * * * * * * * * * * * 46 0 * * * * * * 2131 0 0 I 47 * * * * * * * 399 * * * * * * * * * 2050 * * 47 0 * * * * * * 2131 0 0 Q 48 * * * * * * * * * * * 2025 * 1007 1961 * * * * * 48 0 * * * * * * 2131 0 0 E 49 * * * 1966 * * 1005 * * * * * * * * * * * * 2025 49 0 * * * * * * 2131 0 0 Q 50 * * * * * * * * * * * * * 407 2025 * * * * * 50 0 * * * * * * 2131 0 0 L 51 * * * * * * * 2025 * 1007 1961 * * * * * * * * * 51 0 * * * * * * 2131 0 0 I 52 * * * * * * * 1966 2025 * * * * * * 2050 * 1961 * * 52 428 * 1961 * * * * 2131 0 0 A 53 1495 * * * * * * * * * * * * 1592 * 1673 * * * * 53 0 * * * * * 0 1815 0 1000 N 54 * * * * * * * * * * * 1495 * * * 1673 1592 * * * 54 0 * * * * 0 * 1815 0 1000 V 55 * * * * 2025 * * * * 1961 * * * * 2050 * * 1966 * * 55 0 * * * * * * 2131 0 0 H 56 * * * 2025 2050 * 1966 * * 1961 * * * * * * * * * * 56 0 * * * * * * 2131 0 0 S 57 * * * * * * * * * * * 2025 * 1961 * 1966 2050 * * * 57 0 * * * * * * 2131 0 0 N 58 * * * * * * * * 2025 1961 * 1966 * * 2050 * * * * * 58 0 * * * * * * 2131 0 0 D 59 * * 963 * * * * * 2025 * * * * 2050 * * * * * * 59 963 * 1038 * * * * 2131 0 0 D 60 * * 960 * * * * * * * * * * * * * * * * 1041 60 0 * * * * * 0 1519 0 1483 Y 61 * * * * * * * * * * * * * * * 1041 * * * 960 61 0 * * * * 0 * 1519 0 1483 F 62 * * * * 1007 * * * * 2025 * * * * * * * * * 1961 62 0 * * * * * * 2131 0 0 E 63 * * * 963 * * * * 2025 * * * * 2050 * * * * * * 63 0 * * * * * * 2131 0 0 V 64 2025 * * * * * * * * 1961 * * * * * * * 1007 * * 64 0 * * * * * * 2131 0 0 I 65 * * * * * * * 1966 * * * * * * * * * 427 * * 65 0 * * * * * * 2131 0 0 D 66 * * 0 * * * * * * * * * * * * * * * * * 66 0 * * * * * * 2131 0 0 F 67 * * * * 0 * * * * * * * * * * * * * * * 67 0 * * * * * * 2131 0 0 A 68 399 * 2050 * * * * * * * * * * * * * * * * * 68 0 * * * * * * 2131 0 0 S 69 * * * * * * * * 1038 * * * 1961 * * 1966 * * * * 69 0 * * * * * * 2131 0 0 D 70 * * 0 * * * * * * * * * * * * * * * * * 70 0 * * * * * * 2131 0 0 A 71 0 * * * * * * * * * * * * * * * * * * * 71 0 * * * * * * 2131 0 0 T 72 * * * * * * * * * * * * * 1961 1038 * 1966 * * * 72 0 * * * * * * 2131 0 0 I 73 * * * * * * * 1966 * 993 * * * * * * * 2050 * * 73 0 * * * * * * 2131 0 0 T 74 * * * * * * * * * 1961 * * * * * * 428 * * * 74 0 * * * * * * 2131 0 0 D 75 * * 995 * * * * * * * * 2050 * * * * 1961 * * * 75 0 * * * * * * 2131 0 0 R 76 * * * * * * * * * * * * * 1961 1007 * * * 2025 * 76 0 * * * * * * 2131 0 0 N 77 * * 1961 2025 * * * * * * * 1966 * * * * * * * 2050 77 0 * * * * * * 2131 0 0 G 78 * * * 2025 * 1007 * * * * * * * * 1961 * * * * * 78 0 * * * * * * 2131 0 0 K 79 * * 2050 * * * * * 1966 * * 2025 * * 1961 * * * * * 79 0 * * * * * * 2131 0 0 V 80 * * * * * * * * * 427 * * * * * * * 1966 * * 80 0 * * * * * * 2131 0 0 Y 81 * * * * * * * * * 1961 * * * * * * * * * 428 81 0 * * * * * * 2131 0 0 F 82 * * * * 963 * * 1038 * * * * * * * * * * * * 82 0 * * * * * * 2131 0 0 A 83 0 * * * * * * * * * * * * * * * * * * * 83 0 * * * * * * 2131 0 0 D 84 * * 1966 * * 2050 * * * * * 993 * * * * * * * * 84 407 2025 * 0 * * * 2131 1000 0 K 85 * * * * * * * * 1966 * * * * 1961 * 2025 2050 * * * 85 0 * * * * * * 2131 0 0 D 86 * * 1007 * * * * * * * * 993 * * * * * * * * 86 428 1961 * 1000 1000 * * 2131 1000 0 G 87 * * * 1961 * 428 * * * * * * * * * * * * * * 87 0 * * * * * * 2131 0 0 S 88 * * * * * * * * * * * * * * * 0 * * * * 88 0 * * * * * * 2131 0 0 V 89 * * * * * * * * * * * * * * * * * 0 * * 89 0 * * * * * * 2131 0 0 T 90 * * 2025 * * * * * * * * 2050 * * * 1961 1966 * * * 90 0 * * * * * * 2131 0 0 L 91 * * * * 2050 * * * * 399 * * * * * * * * * * 91 428 * 1961 * * * * 2131 0 0 P 92 * * * * * 632 * * * * * * 1495 * * * * * * * 92 0 * * * * 0 * 1815 0 1000 T 93 * * * 1961 * * * * 1038 * * * * * * * 1966 * * * 93 0 * * * * * * 2131 0 0 Q 94 * * 1005 * * * * * * * * * * 995 * * * * * * 94 0 * * * * * * 2131 0 0 P 95 * * * 2050 * 2025 * * * * * * 1966 * * * 1961 * * * 95 0 * * * * * * 2131 0 0 V 96 * * * * * * * 993 * * * * * * * * * 1007 * * 96 0 * * * * * * 2131 0 0 Q 97 * * * * * * * * 2025 * * * * 407 * * * * * * 97 0 * * * * * * 2131 0 0 E 98 * * * 399 * * * * * * * * * 2050 * * * * * * 98 0 * * * * * * 2131 0 0 F 99 * * * * 1966 * * * * * * * * * * * * * * 427 99 0 * * * * * * 2131 0 0 L 100 * * * * * * * * * 407 * * * * 2025 * * * * * 100 0 * * * * * * 2131 0 0 L 101 * * * * * * * * * 0 * * * * * * * * * * 101 0 * * * * * * 2131 0 0 S 102 * * * * * * * * 1961 * * * * * * 1007 2025 * * * 102 0 * * * * * * 2131 0 0 G 103 * * * * * 0 * * * * * * * * * * * * * * 103 0 * * * * * * 2131 0 0 H 104 * * * * * * 0 * * * * * * * * * * * * * 104 0 * * * * * * 2131 0 0 V 105 * * * * * * * * * * * * * * * * * 0 * * 105 0 * * * * * * 2131 0 0 R 106 * * * * * * * 427 * * * * * * 1966 * * * * * 106 0 * * * * * * 2131 0 0 V 107 * * * * * * * * * 427 * * * * * * * 1966 * * 107 0 * * * * * * 2131 0 0 R 108 * * * * * * * * 1607 * * * * * 574 * * * * * 108 0 * * * * * * 1851 0 0 P 109 * * * * * * * * * * * * 0 * * * * * * * 109 0 * * * * * * 1000 0 0 Y 110 * * * * * * * * * * * * * * * * * * * 0 110 0 * * * * * * 1000 0 0 K 111 * * * * * * * * 0 * * * * * * * * * * * 111 0 * * * * * * 1000 0 0 E 112 * * * 0 * * * * * * * * * * * * * * * * 112 0 * * 0 * * * 1000 0 0 //