HHsearch 1.5 NAME d1biaa1 FAM FILE d1biaa1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1biaa1.a3m DATE Tue Mar 9 19:37:01 2010 LENG 63 match states, 63 columns in multiple alignment FILT 114 out of 1662 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4429 1.4767 SEQ >ss_dssp CCCCHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECSCC >sa_dssp EDEDDCBEEACECADECCDCCBDCABDECECEDDCADECADCADEDECEBCDCEEEBBBBEEE >ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC >ss_conf 960379999999998189722999999838994799999999998898899865885135898 >Consensus MkxxxrxxxIlxlLxxxxxxsxxeLAxxlxvSxxTixrxixxLxxxGxxIxsxxgxGYrLxxp >d1biaa1 MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPEP >UniRef50_Q4A0K6(8-71:363) Putative transcriptional regulator n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q4A0K6_STAS1 E=3e-06 s/c=0.82 id=24% cov=100% MLERHVKLIRLMLINRNQFLNADEIARYLNVSNRTARNDIQYINSEILDdlIVSVKGRGYKLNQ- >UniRef50_C8P0U5(1-64:308) Putative uncharacterized protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0U5_ERYRH E=3e-05 s/c=0.77 id=24% cov=100% MSKLSNALVMLDVLSARSVVPLSELADLLEISERGVQRLKGELESVGYEITTVmgPGGGYVLES- >UniRef50_C6D7L7(1-66:687) PTS modulated transcriptional regulator, MtlR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7L7_PAESJ E=0.0008 s/c=0.68 id=21% cov=98% MRISSRSRRILElLLRNDHDLTAAQIAEEIQVSSRTVHRELAAveeiLRAEGARLLKKSGSGIRLQ-- >UniRef50_UPI0001BC3641(431-488:493) putative transcriptional regulator n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3641 E=0.0008 s/c=0.78 id=22% cov=81% --------KILDCIAEDKYISVKKIAEKIDISRRTVENNIKKMKESDIVVrHGSPKNGY----- >UniRef50_B7GVE1(10-68:303) DeoR-like helix-turn-helix domain protein n=2 Tax=Acinetobacter RepID=B7GVE1_ACIB3 E=0.0008 s/c=0.76 id=24% cov=81% --------NIITRLNRGEYLDSNELTLDFGVTKKTIQRDIERLSIAGLPlvIDEKTRKFY----- >UniRef50_Q15RI4(2-55:156) Transcriptional regulator, AsnC family n=6 Tax=Proteobacteria RepID=Q15RI4_PSEA6 E=2e-05 s/c=0.93 id=15% cov=87% MKLDKFDREILRVMQKDATVSMAELSQKVGLSHTPCWRRVKRMEADGIILQKVT--------- >UniRef50_C9A9A3(12-70:497) Putative uncharacterized protein n=3 Tax=Enterococcus casseliflavus RepID=C9A9A3_ENTCA E=4e-05 s/c=0.84 id=24% cov=92% -KSTVRWLQILSEFEKNEICSASQLAEVTTSTTRTIGKDISQINEYfcGLILITSTNQGY----- >UniRef50_C9LNI8(1-57:211) CBS domain protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LNI8_9FIRM E=0.0003 s/c=0.81 id=18% cov=79% --------EITRIVRENGPITGEMIAQRLHVTRSALRGDLAVL-LSGEVIAARRRLGY----- >UniRef50_C6D8A8(10-66:264) Transcriptional regulator, DeoR family n=2 Tax=Paenibacillus RepID=C6D8A8_PAESJ E=1e-06 s/c=0.95 id=18% cov=81% --------AILQLLKQQGRITIQELVERFDCSEATARRDLEHMEATYPIIRTIGGAMY----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 5078 43 * * * * * * * * * 1 0 * * * * * * 6275 0 0 K 2 4469 * 4342 4423 * 5591 * * 1016 3469 * * * 4481 4102 4203 3899 * * 5102 2 0 * * * * * * 6707 0 0 D 3 5433 * 3573 3549 5241 5453 * 3921 3118 2759 * 4659 4424 4769 3338 3426 3542 5132 * * 3 0 * * * * * * 6732 0 0 N 4 3965 * 3383 3829 * * 3380 * 5862 5221 * 1835 * 4225 4067 3142 3023 * * * 4 50 6068 5726 2322 322 * * 6709 1000 0 T 5 5110 * 6063 2373 * 5711 5495 4948 3117 4778 * 4182 3842 3170 * 2947 2969 4494 * * 5 0 * * * * 0 * 6696 0 1000 V 6 * * * * 5107 6140 * 5091 2525 3581 5679 5501 * 5888 1089 5582 4636 3639 * * 6 0 * * * * * * 6632 0 0 P 7 4234 * 3856 2998 * * 5163 4735 3205 2944 6071 5690 5163 2423 2965 * 5033 5598 5582 * 7 0 * * * * * * 6635 0 0 L 8 5422 * 6587 4217 2860 6291 4892 4931 3829 1481 4296 5151 * 3889 4407 6315 * 5717 * 4589 8 0 * * * * * * 6810 0 0 K 9 4214 * 5797 3303 7371 7031 5441 4870 2041 * 6665 6770 * 2296 2469 5654 3989 6226 * 6219 9 0 * * * * * * 6854 0 0 L 10 * * * * 6692 * * 786 6222 2237 3939 * * * 6308 * 6837 3349 * * 10 0 * * * * * * 6851 0 0 I 11 6841 * * * 5853 * 6607 2216 * 812 4106 * * * 6450 * * 3346 6496 * 11 11 6986 * 0 * * * 6864 1000 0 A 12 4015 * 3579 2743 * 7022 5308 4918 3105 5873 4591 4204 * 3097 2682 4797 3829 5738 * 6348 12 19 6876 7795 0 * * * 6863 1000 0 L 13 3653 6751 * 5710 4128 * 5347 3075 6227 1305 4340 * * 5383 4610 5445 * 3652 * 4139 13 46 5825 6201 0 * * 0 6868 1652 1000 L 14 * 6535 * * 5072 * * 2951 * 462 4746 * * 6188 * * * 4233 * * 14 56 4717 * 292 2449 0 * 6857 2904 1717 A 15 4197 6362 5302 3891 6773 7119 6771 5760 2445 4558 4422 3330 * 2616 3074 3291 6966 6631 * 5483 15 74 4324 * 990 1010 * * 6863 2936 0 N 16 3525 * 2915 2551 * 6283 5832 * 3334 5066 * 3045 * 2945 5018 3424 3985 * * 6360 16 105 3831 * 1247 789 * * 6863 3599 0 G 17 6097 * 2435 4147 * 2814 4311 * 3874 4651 * 2543 6224 4584 2945 4163 5525 6746 * * 17 49 4914 * 309 2376 * * 6863 2486 0 E 18 3940 * 3380 2928 * 2423 5255 * 3348 5361 * 4550 3368 3695 3794 4283 6437 6656 * 6573 18 49 5187 7444 385 2094 * * 6863 2082 0 F 19 5071 6496 * 4591 2449 4447 7203 4634 3944 4880 7032 6013 3240 * 3476 3840 4672 4196 4456 3125 19 12 6951 * 0 * 0 * 6868 1000 1000 H 20 3820 5182 * * 5575 * 4828 2097 6642 2358 3849 * 5812 6437 6680 * 4512 2264 6225 4927 20 0 * * * * * * 6863 0 0 S 21 * * 5800 6159 * 5171 5749 * 4207 6972 * 3832 4666 * 4888 1416 1550 * * * 21 0 * * * * * * 6869 0 0 G 22 2231 6892 * * 7013 2679 * 3549 6425 3850 4546 5709 6234 4617 6069 3357 4757 2638 * 5489 22 0 * * * * * * 6869 0 0 E 23 3200 * 3776 2693 * 4375 5982 5400 2958 7000 5538 3897 5938 3333 4121 3190 4142 6450 * * 23 14 6658 * 2585 263 * * 6869 1000 0 Q 24 3973 * 2780 1223 * 6667 5015 * 4046 * 6758 6764 6587 3089 4426 5749 5604 6633 6918 6546 24 0 * * * * * * 6869 0 0 L 25 6383 * * * 6550 * * 1863 * 738 4917 * * * * * * 3838 * * 25 0 * * * * * * 6869 0 0 G 26 698 5674 * 7132 * 4100 * 5008 * * 4205 * * * * 2503 5482 6099 * * 26 0 * * * * * * 6869 0 0 E 27 4131 * 2639 2086 * 5156 5888 * 2848 5575 * 3992 6658 3331 3104 5161 5280 * * * 27 0 * * * * * * 6869 0 0 T 28 3818 6446 6882 3164 * * 3959 3816 2837 3852 4557 5138 * 3313 2693 4397 5273 5732 * 4840 28 15 6587 * 2807 222 * * 6869 1000 0 L 29 * 5761 * * 2589 * * 4078 * 797 4786 * * * * 6525 4706 3928 * 5079 29 11 7062 * 2322 322 * * 6869 1000 0 G 30 6925 6861 3585 3191 6366 1597 3860 * 3725 * * 2609 * 4762 5945 4209 5554 * * 6546 30 0 * * * * * * 6869 0 0 M 31 4908 4214 * * 6364 * * 2330 6627 3149 4100 * * * 5796 5408 5109 1195 * 6234 31 0 * * * * * * 6869 0 0 S 32 4652 * 5033 * * * 6536 * * * * 4441 5316 * * 516 2751 * * * 32 0 * * * * * * 6869 0 0 R 33 4556 * 3925 3090 * 6153 5296 5325 3227 5636 5704 4882 4400 4113 1640 4673 4380 5913 * * 33 0 * * * * * * 6869 0 0 A 34 2993 * 6069 5195 * 5361 * 5947 3591 * 4979 5654 4243 4151 1672 3088 3857 4398 * * 34 0 * * * * * * 6869 0 0 A 35 3466 * * * * 5613 6651 6958 * 6353 * 6784 4925 6530 * 3407 549 5140 * * 35 0 * * * * * * 6869 0 0 I 36 3484 5298 * * 5548 * * 1300 * 3782 * * * * * * 5909 1441 * * 36 0 * * * * * * 6869 0 0 N 37 5406 * * 6796 5622 6391 4106 5694 4310 5186 * 6962 * 3857 1394 3895 5939 4292 3768 3129 37 0 * * * * * * 6869 0 0 K 38 * * 5229 4576 6518 6836 6743 * 3031 5822 * 2634 * 4733 1144 4248 4931 5267 * * 38 0 * * * * * * 6869 0 0 H 39 4352 * 1278 3275 5501 * 3640 6133 * 4125 5865 5411 * 7140 3672 6353 * * * 3024 39 0 * * * * * * 6869 0 0 I 40 6724 6450 * * 4528 * * 1168 6457 1970 3859 * * * 6530 * * 2792 * * 40 8 7580 * 2000 415 * * 6869 1000 0 Q 41 2930 * 3683 3457 * 4503 5167 5241 2345 6472 6546 3741 * 3670 4034 2901 5869 5865 * * 41 18 6353 * 2000 415 * * 6869 1000 0 T 42 3107 * 4147 2689 4832 6226 5665 3563 3286 5486 * 5157 * 4059 3735 3313 3770 5271 6751 5462 42 102 3877 * 2034 404 * * 6869 3514 0 L 43 * 6214 * * * * * 2931 * 360 3712 * * * * * * * * * 43 30 5615 * 1775 499 * * 6869 1557 0 R 44 4495 6173 6002 1639 * 7046 6724 * 3200 5760 6364 3127 6353 4545 2645 4859 4216 5004 * * 44 57 4686 * 1673 543 * * 6869 2432 0 D 45 3237 6966 2942 1651 * 6425 5685 6054 2865 6061 * 5486 6756 3230 5844 3746 * 6796 * * 45 72 4361 * 1637 560 * * 6869 2949 0 W 46 2944 * 4431 2506 6765 6261 6758 6366 3634 3243 4153 4520 * 3625 6021 3633 5573 5639 6962 3444 46 39 5222 * 1985 420 * * 6869 2347 0 G 47 * * 4845 * 5698 424 * 6319 6544 * * 4099 7109 4202 * 5433 5298 * * 6828 47 127 4755 4411 1678 541 * * 6869 2559 0 V 48 3504 * * 4596 3769 * 5716 2451 5195 2585 6422 * 6069 6591 * * 5212 2681 5681 2627 48 163 4862 3791 2218 349 336 2269 6887 2285 2771 D 49 4321 * 4554 3380 * * * 2763 3994 3626 * 5838 2778 5052 3143 5873 4037 3183 * 5289 49 67 5279 5693 1919 443 200 2948 6914 1609 3502 V 50 5292 * 6333 * 6795 * * 977 5314 2098 * * * * * 6587 * 2507 * * 50 133 4569 4449 1536 610 * 0 6951 2602 1891 F 51 5427 * 4085 2487 6537 5810 4596 3843 3563 4946 * * * 3291 3636 4625 4555 3007 * 3431 51 67 5287 5649 1263 777 1600 577 6903 1587 3262 T 52 2890 * 5734 6396 * 3991 * 6316 4390 5294 * 5422 * 5815 3654 1387 3266 4473 * 4878 52 26 * 5784 * * 2669 247 6873 0 3114 V 53 3598 * 4177 3165 * 5684 4712 3445 3081 6357 * 5289 6202 4535 5256 3131 3904 2649 * 5510 53 29 5627 * 1000 1000 1330 732 6929 1521 3521 P 54 4914 * 5393 6739 * 4828 5414 * 2733 * * * 2071 3513 2367 5226 2837 6279 6069 6539 54 70 6264 4859 0 * 583 1588 6929 1000 2810 G 55 5009 * * * * 801 5175 * 2937 * * 3594 * 5746 3630 4661 * * * 6044 55 76 6169 4747 1000 1000 0 * 6937 1000 2787 K 56 6335 * 6009 3954 * 3720 4806 6223 2011 4178 * 5346 * 4789 1905 5282 5529 4235 * 4295 56 71 4377 * 2034 404 0 * 6516 2251 2013 G 57 4844 * * 6102 * 121 * * * * * * * * * 6068 * 5935 * * 57 43 5084 * 2673 246 * * 6509 1563 0 Y 58 5366 * * * 5364 * * 3449 * * * * * * * * * 4109 * 318 58 20 * 6216 * * * * 6494 0 0 S 59 * 5222 * 6133 5677 * 5254 4462 2880 5110 5158 * * 4102 1089 5063 4902 4521 6552 5102 59 33 5467 * 878 1133 0 * 6240 1634 1000 L 60 6074 * * * * * * 3485 * 394 6083 * * * * * 5671 4457 6021 4661 60 0 * * * * * * 6261 0 0 P 61 2884 * 5488 2232 * * * 6109 4201 3490 * 4253 2824 3177 4118 4422 5669 4529 * * 61 0 * * * * * * 5983 0 0 E 62 * * 5577 1636 * 5409 2963 4907 2755 * * 4154 * 3412 4399 2982 * * * * 62 0 * * * * * * 5896 0 0 P 63 * * * * * * * * * * * * 0 * * * * * * * 63 0 * * 0 * * * 4376 0 0 //