HHsearch 1.5 NAME d1au7a1 FAM FILE d1au7a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1au7a1.a3m DATE Mon Mar 8 16:20:25 2010 LENG 58 match states, 58 columns in multiple alignment FILT 100 out of 1943 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.5 EVD 0.4353 0.8682 SEQ >ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC >sa_dssp EEEDECDEEBDECADECBEEDDCBDEECBDEBBEECECEDDCADDCACDCDEDEDEEE >ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC >ss_conf 9787689999999999999878988899999999857998797798688888852069 >Consensus rxRtxftxxQxxxLexxFxxxxxPsxxxxxxLaxxxxlxxxqVxxWFxNrRxrxkrxk >d1au7a1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK >UniRef50_C4QL50(312-362:712) Paired box protein pax-6, putative (Fragment) n=2 Tax=Schistosoma mansoni RepID=C4QL50_SCHMA E=0.0003 s/c=0.91 id=25% cov=90% -----IELKKKEITRSEFERTHYPDLIIREQLAESMLIPESRIQVWFSNRRAKWRR-- >UniRef50_A8XIF9(582-636:688) Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8XIF9_CAEBR E=0.0007 s/c=0.82 id=27% cov=97% RTRLVFTDTQKAKLVDSFKRNPNPPPEHMAQLAVRLHLDLPTVRNFFVNYRRRLK--- >UniRef50_C3XQD6(250-293:453) Paired box protein n=5 Tax=Branchiostoma RepID=C3XQD6_BRAFL E=2e-06 s/c=1.22 id=23% cov=76% -KRSTFTPDQLEALEQAFNRGHYPtDPFNRDNMSNKVDLSQTRVQ-------------- >UniRef50_Q4RFH1(193-244:654) Chromosome 8 SCAF15119, whole genome shotgun sequence. (Fragment) n=4 Tax=Tetraodontidae RepID=Q4RFH1_TETNG E=0.0005 s/c=0.88 id=21% cov=91% ------SKEQLAELKASYLKNHFVTDAEIARLMKLTHLTKGEIKKWFSDTRYNQRNSK >UniRef50_A2QJG0(228-284:327) Contig An04c0190, complete genome n=7 Tax=Trichocomaceae RepID=A2QJG0_ASPNC E=2e-05 s/c=0.88 id=27% cov=95% RRRGNLPKPVTDILRAWFHEhldHPYPSEEDKQMFMTRTGLTISQISNWFINARRRQ---- >UniRef50_A3EYA3(82-139:289) Homeodomain transcription factor Hox3b n=2 Tax=Strigamia maritima RepID=A3EYA3_9MYRI E=4e-11 s/c=1.19 id=27% cov=102% RSRTAYTQSQLVELEKEFHFNRYLCRPRRVELASMLNLTERQIKIWFQNRRMKNKKIK >UniRef50_Q54X22(171-228:327) Homeobox protein 8 n=1 Tax=Dictyostelium discoideum RepID=HBX8_DICDI E=0.0003 s/c=0.79 id=25% cov=102% KTRSRKTKEHKDQLENLFNSNPFPDAIEKEIIAYQFDMSVEQIVTWFKHKRENLKKAQ >UniRef50_A7TFV1(160-216:323) Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TFV1_VANPO E=5e-06 s/c=0.92 id=25% cov=98% RKRRRTSSQESDILHAHFSVSPILDKETRSKLSKLCSMSEKAVQIWFQNKRQALKR-- >UniRef50_C3YSA5(62-119:287) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YSA5_BRAFL E=6e-06 s/c=0.89 id=27% cov=88% -------PHQVQLLEGVYQATKMPDSAQKNVIATFVGVGSKQVQTWFQNRRSRDRRV- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 1276 * * * * * 768 * * * * * 1 0 * * * * * * 6062 0 0 R 2 4220 * 6259 4710 * 5453 4321 * 2461 * 4481 4995 3472 5410 2145 4233 3140 4856 * 5410 2 0 * * * * * * 6123 0 0 R 3 5036 * * * * 5964 * * 3152 * * * * * 250 * * * * * 3 45 * 5036 * * * * 6354 0 0 T 4 5746 5974 * 5630 5271 6457 5264 5046 3948 4717 6331 4436 4995 4984 4243 4185 1180 4879 5026 6218 4 46 5664 6394 1585 585 0 * 6377 1000 1646 T 5 5460 * * 4988 6389 6130 5777 4155 3668 5188 * 4117 6401 5712 1913 2948 2954 2985 * * 5 18 6315 * 0 * * 0 6585 1000 1000 I 6 6354 * * * 1028 * * 3289 5298 2452 5144 * 4794 * 5341 * 5778 * 5492 4121 6 14 6677 * 1585 585 * 0 6583 1000 1000 S 7 5672 * 4012 6569 * 6766 6182 * 4490 * * 4329 5739 5037 6519 1732 1219 * * * 7 17 6394 * 1000 1000 0 * 6575 1000 1000 I 8 4250 * 2549 3455 * * * 5369 2621 4748 * 5124 2493 3848 4915 3850 4321 4915 * * 8 14 6745 * 0 * * * 6586 1000 0 A 9 3713 * 3095 1970 5046 5767 5043 5136 4167 4422 * * * 4091 4612 4174 4063 5121 5055 3875 9 28 5683 * 0 * * * 6586 1150 0 A 10 4789 * * 3254 6461 * 4884 * 6392 5586 * * * 535 * 5302 4604 5365 * * 10 15 * 6580 * * * * 6586 0 0 K 11 6720 5933 * 4401 6178 * 6483 3801 3063 1553 5429 5752 * * 3995 5100 3759 2744 * 6272 11 0 * * * * * 0 6579 0 1000 D 12 3475 * 3653 2743 * 4743 5048 * 3129 4872 6701 4186 4639 3208 2653 4718 5677 5213 * 6807 12 0 * * * * 0 * 6581 0 1000 A 13 2579 6532 * 3547 5637 5841 * 2229 3677 3592 4391 6760 * 5667 4487 5684 4525 2992 * 6094 13 0 * * * * * * 6678 0 0 L 14 * * * * * * * * * 140 3434 * * * * * * * * * 14 0 * * * * * * 6657 0 0 E 15 * 6579 4605 1026 * * 4939 * 3173 3864 * 3933 * 4153 3307 * * 5487 * * 15 0 * * * * * * 6657 0 0 R 16 2320 * 4221 3840 6604 4228 * * 2699 6662 6984 4462 * 3703 2999 3046 5096 5921 * 5220 16 0 * * * * * * 6657 0 0 H 17 3105 4739 * 4562 4150 * 4632 3572 4922 3468 * 5718 * 6579 5770 3412 3901 3043 3778 3366 17 12 6877 * 0 * * * 6657 1000 0 F 18 * * * * 482 * * * * 6291 * * * * * * * * 5921 1972 18 30 5588 * 1585 585 * * 6657 1438 0 G 19 3151 * 4350 2922 * 5807 5200 6542 3308 4319 5113 3418 * 2486 3696 3562 5237 6604 * * 19 68 4434 * 1977 423 * * 6657 2722 0 E 20 5083 6633 5721 2555 5674 * 5006 3570 2705 5164 5068 5022 * 3151 3323 4612 3418 4752 * 6586 20 84 4141 * 764 1282 * * 6657 2399 0 H 21 5333 4185 3274 5727 6647 4182 3256 * 3987 * * 1693 * 5003 6231 3249 3550 * * 5581 21 11 7054 * 1585 585 * * 6657 1000 0 S 22 5084 6190 4031 * * 4864 3590 * 3500 * 6896 3649 1753 3106 3436 4192 4578 * * * 22 30 5591 * 711 1361 * * 6657 1640 0 K 23 * 5359 * 6485 3664 * 3032 6915 2956 6859 * 3806 * 6346 3877 4821 3979 6561 6401 1538 23 0 * * * * * * 6657 0 0 P 24 6232 * * * 6473 * * 3651 * 2897 6346 * 539 * * 5998 * 4463 * * 24 32 5515 * 678 1416 * * 6657 1730 0 S 25 5771 6870 2816 5085 * 4073 * * 5387 * * 3273 6193 5077 6735 1476 2302 * * * 25 0 * * * * * * 6657 0 0 S 26 3512 * 6635 3305 4407 5005 6792 5240 2706 4941 5978 4837 3490 4466 3277 3520 3707 4523 * 7373 26 0 * * * * * * 6657 0 0 Q 27 3258 6161 3278 1868 5258 6872 5006 4989 3451 6716 * 6043 4733 4341 4465 4589 4199 5650 * 4544 27 0 * * * * * * 6657 0 0 E 28 5018 * 4173 1550 * 5430 6193 7006 4341 4042 5583 6986 * 2686 3564 6671 3250 4891 * * 28 0 * * * * * * 6657 0 0 I 29 4782 4116 * * * * * 2542 2801 3659 4151 6370 * 4871 1637 6561 4853 5033 * 6401 29 0 * * * * * * 6657 0 0 M 30 3798 5047 3737 2325 5527 6017 5251 6699 2791 4366 4849 3898 * 3197 5078 4437 5549 4796 * 6231 30 0 * * * * * * 6657 0 0 R 31 3872 * 4894 2377 6903 5238 5849 4346 3060 3744 6295 6986 * 2990 3180 4317 3640 5477 * * 31 0 * * * * * * 6657 0 0 M 32 6161 * * * 6190 * * 2112 * 706 4038 * * * * * * 5025 * 4785 32 0 * * * * * * 6657 0 0 A 33 721 5559 * * 6320 3935 * 5314 * 6735 5749 * * 6636 6485 2864 4521 4688 * * 33 0 * * * * * * 6657 0 0 E 34 3264 6735 4937 2672 * 5366 6636 5887 2326 5356 4780 3702 * 5077 3662 4051 4050 4027 * 5802 34 0 * * * * * * 6657 0 0 E 35 3994 * 4868 2265 * * 5794 5565 2692 3527 4833 6320 * 3244 3130 4872 4343 4869 5921 6295 35 0 * * * * * * 6657 0 0 L 36 4028 4299 * * 4155 4803 * 3059 * 1358 5100 5743 * * * 4964 2695 4275 * * 36 33 5480 * 2000 415 * * 6657 1837 0 N 37 6161 6606 3683 4647 * 1469 4273 * 3523 * 5727 2108 * 5018 4863 4575 * * * * 37 97 3948 * 3289 156 * * 6657 2998 0 L 38 6346 6636 * * 6295 * * 3069 * 835 2926 * * * 6084 5347 * 3128 * * 38 14 6672 * 0 * * * 6657 1000 0 E 39 6911 * 3115 3983 * 6161 5761 * 4513 * * 4440 3100 5055 6904 1773 2113 6401 * * 39 0 * * * * * * 6657 0 0 K 40 4318 * 4348 2186 5192 * 5624 5698 3304 4565 6517 6714 2999 5028 3862 5996 4368 3399 * 3906 40 0 * * * * * * 6652 0 0 E 41 4939 5138 4614 3327 6646 5087 5029 * 2616 5181 * 5105 6182 3953 2210 3021 3839 5562 * * 41 0 * * * * * * 6652 0 0 V 42 5812 6395 6646 3595 * * 5911 6689 5245 5731 * 4077 * 1334 3702 4093 3419 3045 * * 42 42 5756 6663 2338 318 * * 6652 1660 0 V 43 * * * * * * * 1172 * 5345 * * * * * * 5706 965 * * 43 27 5737 * 2322 322 0 * 6643 1000 1000 R 44 4547 6395 * 4526 * 6431 5656 6810 2387 6540 * 3928 * 2280 2273 4872 4020 4634 5473 5462 44 0 * * * * * * 6652 0 0 V 45 5977 6835 * 5723 5155 5056 6541 3031 3697 5735 5441 2168 * * 4206 3974 3825 2270 * 5155 45 0 * * * * * * 6644 0 0 W 46 * * * * 4418 * * * * * * * * * 5735 * * * 130 5615 46 0 * * * * * * 6644 0 0 F 47 * * * * 121 * * 5984 * 4775 * * * * * * * * * 5155 47 0 * * * * * * 6644 0 0 C 48 3610 5579 * 4708 6855 6033 4911 5465 2682 5533 4527 5644 * 1452 4047 3875 * 6145 * 5061 48 13 * 6799 * * * * 6643 0 0 N 49 5428 * 5543 4496 * 6255 5529 * 4079 5724 * 515 * 4942 4604 * 5350 * * * 49 0 * * * * * 0 6638 0 1000 R 50 3723 * * 6255 5724 * 4208 * 2566 6306 6051 4429 * 3877 1294 6246 4069 * 6316 4879 50 16 6514 * 2000 415 * 0 6638 1000 1000 R 51 * * * * * * * * 4630 5684 * 5906 * * 115 * * * * * 51 0 * * * * 0 * 6633 0 1000 Q 52 1832 6332 * 4489 * * * 4488 4513 6306 5847 3872 * 3093 2389 3830 4518 6047 * 4706 52 0 * * * * * * 6636 0 0 R 53 4038 * * 4645 * * 6462 * 1488 5601 6594 4940 6830 6707 1377 4925 5744 6293 * * 53 20 6194 * 1585 585 * * 6683 1000 0 E 54 3691 6455 3227 2473 6399 5321 6292 4376 6371 3236 4399 4065 * 3505 * 3797 6425 4975 3938 4950 54 0 * * * * * * 6506 0 0 K 55 5075 * * 5965 * * * * 836 * 5613 * * * 1421 * * * * * 55 0 * * * * * * 6455 0 0 R 56 4971 * * 6006 * * * * 1331 * 5765 3630 * 5976 1255 5572 * * * * 56 0 * * * * * * 6118 0 0 V 57 2717 * * * * * * 5138 4979 1742 2757 * * 4952 * 3811 3220 4020 * 3870 57 0 * * * * * * 5277 0 0 K 58 * * * 4861 * * * * 512 * * * * 2748 3116 * * * * * 58 0 * * 0 * * * 5088 0 0 //