HHsearch 1.5
NAME  c8c29v_
FAM   
FILE  c8c29v_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c8c29v_.a3m 
DATE  Sat Jul 29 15:51:47 2023
LENG  31 match states, 31 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.5420  3.7264 
SEQ
>ss_dssp
CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
>sa_dssp
EEEEDEEEEEEEEEDDDEDEEDEDDEEEDEE
>ss_pred
CHHHHHHHHHHHHHHHCHHHHHHHHHHCCCC
>ss_conf
9166878999999840318998886731789
>Consensus
lexiaqltxltxxivsgplvixllairkgnl
>c8c29v_
LEVIAQLTVLTLTVVSGPLVIVLLAVRKGNL
>UniRef50_Q8WI31(4-33:33) Photosystem II reaction center protein ycf12 n=3 Tax=cellular organisms RepID=YCF12_PSINU  E=0.0003 s/c=1.54 id=74% cov=100%
-ELIAQLTFLTSIIVSGPLVIALLAIRKGNL
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
L 1    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

E 2    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1176	0	0	

V 3    *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	3
       0	*	*	*	*	*	*	1176	0	0	

I 4    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1176	0	0	

A 5    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1176	0	0	

Q 6    *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1176	0	0	

L 7    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1176	0	0	

T 8    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	8
       0	*	*	*	*	*	*	1176	0	0	

V 9    *	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	9
       0	*	*	*	*	*	*	1176	0	0	

L 10   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1176	0	0	

T 11   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	11
       0	*	*	*	*	*	*	1176	0	0	

L 12   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	1000	*	*	*	*	12
       0	*	*	*	*	*	*	1176	0	0	

T 13   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	1000	*	*	*	13
       0	*	*	*	*	*	*	1176	0	0	

V 14   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	14
       0	*	*	*	*	*	*	1176	0	0	

V 15   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	15
       0	*	*	*	*	*	*	1176	0	0	

S 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	16
       0	*	*	*	*	*	*	1176	0	0	

G 17   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1176	0	0	

P 18   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1176	0	0	

L 19   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1176	0	0	

V 20   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	20
       0	*	*	*	*	*	*	1176	0	0	

I 21   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1176	0	0	

V 22   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	22
       0	*	*	*	*	*	*	1176	0	0	

L 23   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1176	0	0	

L 24   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1176	0	0	

A 25   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1176	0	0	

V 26   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	26
       0	*	*	*	*	*	*	1176	0	0	

R 27   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	27
       0	*	*	*	*	*	*	1176	0	0	

K 28   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1176	0	0	

G 29   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1176	0	0	

N 30   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1176	0	0	

L 31   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	0	*	*	*	1176	0	0	

//