HHsearch 1.5 NAME c7zc1K_ FAM FILE c7zc1K_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7zc1K_.a3m DATE Sat Jul 9 08:46:32 2022 LENG 107 match states, 107 columns in multiple alignment FILT 75 out of 79 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.3653 -1.7527 SEQ >ss_dssp CCCCCCCCCCSSSSSSCCCCHHHHHHHHHHHHHTTCEEEEEEECGGGTTSSSCEECSCCCSSCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEE EEEECCC >sa_dssp EEEEEEEECCDEDCEEEECDEEDBDECBDDBCEDEBBBBABBADCEECEDEEBDDDEECCEECEDCDCABDCBDDACEDDDDCBACBAADCEEEEDDDCC BCCCEAE >ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEE EEEECCC >ss_conf 9860124311212117998989999999999977982588526888546653212447434888889999999999986987708999970788528999 9874589 >Consensus xxxxxxxxxxetxSylPxltdxxIxxQVxxlLxqGxxixiExadxrrxrxxyWxxwxlPxfxxxdxxqVlxelexclxxxpxxYVRliGfDxxxqxrxxx xivxRPx >c7zc1K_ VGDYQTVATLETFGFLPPMTQDEIYDQIAYIIAQGWSPLIEHVHPSRSMATYWSYWKLPFFGEKDLGVIVSELEACHRAYPDHHVRLVGYDAYTQSQGAC FVVFEGR >UniRef50_A4SA23(47-159:177) Ribulose bisphosphate carboxylase small chain n=6 Tax=cellular organisms RepID=A4SA23_OSTLU E=6e-13 s/c=0.66 id=39% cov=89% ---------FETFSFLPPLSDAEISKQVQYLLNNGWTPCIEfedsahaytDGHGWANMDTsinagyydnrYWVMWKLPMYGCQNPDEVIAEINTCIKCFP DCYVRVAGFDNIKQVQCSAFLA---- >UniRef50_P14960(7-103:139) Ribulose bisphosphate carboxylase small chain n=408 Tax=cellular organisms RepID=RBS_GUITH E=6e-33 s/c=1.45 id=31% cov=90% -----------AFSFLPDLTDEQIVKQIQYAISKNWALNVEWTDDPHPRNAYWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVesCC LSFIVQRP- >UniRef50_B8HQJ5(438-531:650) Carbonate dehydratase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HQJ5_CYAP4 E=5e-06 s/c=0.56 id=20% cov=86% -------------SYAPVPSggiEADVVQQVRQLIAQGCQIGLEFADERRFKTSSWQ--SGATLQTRQESEVFAALESFLAEHAKDYVRLIGIDPKGKKR VAETIVHRP- >UniRef50_B4WNZ5(374-454:455) Ribulose bisphosphate carboxylase, small subunit, putative n=2 Tax=Cyanobacteria RepID=B4WNZ5_9SYNE E=6e-07 s/c=0.68 id=20% cov=75% -----------------------VQQQLQSVLSSGDRIAIEHSDQRRFRMNSWQ----PYAAVDTANQVEAKerLQHCLSEFSNYYIRLIGINTRTKQRT AELIVHRP- >UniRef50_O30711(457-541:661) Carbon dioxide concentrating mechanism protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=O30711_SYNP2 E=5e-16 s/c=1.00 id=22% cov=78% ----------------------DVAGQIAALASQGCSFTAEHASTRRFKTQSWL--GAGFVEGHSANQILANIQAIAAQFPNEYVQLIAVDPNSKTRAAE IIIQRP- >UniRef50_C5SC11(34-118:119) Ribulose bisphosphate carboxylase small chain n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SC11_CHRVI E=5e-15 s/c=0.97 id=25% cov=75% --------------------------QLEHCLHRGCIIAIEHAERVQAAYTAWEPWEPPSCYSGDMAAVHGAIARCRQAHCDHHIRLSVEDVSYHSR-LA LMVHRP- >UniRef50_A9RL69(1-50:60) Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RL69_PHYPA E=2e-06 s/c=1.07 id=20% cov=48% --------------------------------------------------------KLSMLKCHDSTYVLKEIEKYKKTFFTYYVCILGFDNVNHVQISR FLAAKP- >UniRef50_B4WNX1(500-581:872) Ribulose bisphosphate carboxylase, small subunit, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNX1_9SYNE E=4e-13 s/c=0.92 id=20% cov=78% ----------------------EVAQAVGRIIRSGNHVGVEFADKRRYRSGIWQT--APSINASSESAAVNQLQRFLDQNADKYVRIFGVNIQTKTRGAA TTIHKP- >UniRef50_Q7XYK5(71-185:252) Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2 (Fragment) n=6 Tax=Chlorarachniophyceae RepID=Q7XYK5_BIGNA E=3e-30 s/c=1.15 id=31% cov=98% --DPANNLKYETMSYTNVFTEQDIAAQINYMIQNGLIPCVEFdkggqifrehsRMPGYYDGRYWTMWKLPMFGATDAGAVMREIAECKQNNPDSFIRVLG FDNIKQVQCMGFLASRP- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 1592 * * 1542 * * * * * * 1623 * * 1 0 * * * * * * 1617 0 0 G 2 * * * * * 582 * * * * * * * 1592 * * * * * * 2 0 * * * * * * 1617 0 0 D 3 * * 0 * * * * * * * * * * * * * * * * * 3 0 * * * * * * 2019 0 0 Y 4 * * * * * * 2066 * * * * * 1754 * * * * * * 1105 4 0 * * * * * * 2019 0 0 Q 5 902 * * * * * * * * * * 2115 * 2096 * * * * * * 5 0 * * * * * * 2019 0 0 T 6 * * * * * * * * * * * 2196 * * * 2369 766 * * * 6 0 * * * * * * 2190 0 0 V 7 * * * * * * * 1644 * * * 1530 * * * * 2616 2551 * * 7 0 * * * * * * 2349 0 0 A 8 2818 * * * * 3065 * * 3417 2815 * * 1435 * 2909 * * * * * 8 0 * * * * * * 2637 0 0 T 9 * * * * * * * * 633 * * * * * 1994 * 3266 * * * 9 0 * * * * * * 2640 0 0 L 10 * * * * 682 * * * * 3776 * * * * * * * * * 1719 10 0 * * * * * * 2638 0 0 E 11 * * * 0 * * * * * * * * * * * * * * * * 11 0 * * * * * * 2638 0 0 T 12 2944 * * * * * * * * * * * * * * * 201 * * * 12 0 * * * * * * 2756 0 0 F 13 * * * * 780 * * * * 1558 3680 * * * * * * * * * 13 0 * * * * * * 2934 0 0 G 14 * * * * * 4474 * * * * * * * * * 66 * * * * 14 0 * * * * * * 3408 0 0 F 15 * * * * 1731 * * * * * * * * * * * 3689 * * 687 15 0 * * * * * * 3395 0 0 L 16 3664 * * * * * * * * 314 * * * * * * 4674 3689 * * 16 0 * * * * * * 3395 0 0 P 17 * * * * * * * * * * * 4674 58 * * * * * * * 17 0 * * * * * * 3395 0 0 P 18 2839 * 2674 * * * * * * * * * 878 * 6212 * 4872 3160 * * 18 0 * * * * * * 3488 0 0 M 19 * * * * 4826 * * * * 614 3119 * 3920 * 4372 4033 * 5597 * * 19 0 * * * * * * 3591 0 0 T 20 * * * * * 4750 * * 6101 * * 3204 4372 * * 1908 930 * * * 20 99 3920 * 1585 585 * * 3591 1000 0 Q 21 4300 * 726 3247 * 6179 * * * * * * 3858 4627 3918 * 4321 * * * 21 52 4823 * 1000 1000 * * 3873 1000 0 D 22 1882 * 2938 1679 * * * * 4372 4984 * 4889 * 3101 * 4715 * 5828 * * 22 0 * * * * * * 3902 0 0 E 23 5395 * 2160 1607 * * * * 5348 * * * * 1824 * 3746 5371 5756 * * 23 0 * * * * * * 4295 0 0 I 24 * * * * * * * 1111 * 3120 5389 * * * * * * 1328 * * 24 0 * * * * * * 4376 0 0 Y 25 2063 * * 3930 * * * 5276 4775 3697 4883 * * 3511 4349 3616 4246 2130 * 5493 25 0 * * * * * * 4376 0 0 D 26 3612 * 3754 3158 * 4282 * * 1403 * * 5690 * 2803 4788 4782 3890 * * * 26 23 * 5961 * * * * 4370 0 0 Q 27 5176 * * 3046 * * * * 5786 * * * * 263 * * * * * * 27 0 * * * * 0 * 4500 0 1000 I 28 * * * * * * * 2084 * 2715 * * * * * * * 709 * * 28 0 * * * * * * 4501 0 0 A 29 3143 * 2659 2770 * 5193 5185 5239 5735 5509 * 4474 * 3071 1920 * 4980 * * * 29 0 * * * * * * 4502 0 0 Y 30 3692 * * 6270 5298 4148 4615 * * * 6288 5555 * 3227 4578 2780 * * * 1124 30 0 * * * * * * 4502 0 0 I 31 3409 4135 * * * * * 2513 * 874 3600 * * * * * * 5194 * 5753 31 0 * * * * * * 4501 0 0 I 32 4855 * * * 5978 * * 2112 * 744 4059 * * * * * * 4031 * * 32 0 * * * * * * 4501 0 0 A 33 2101 * 3910 * * * 4615 * 4479 * 5814 2601 * 5101 2521 2369 4827 * * * 33 0 * * * * * * 4502 0 0 Q 34 * * * * * 5555 * * 2753 * * 2214 * 1026 4615 3592 * * * * 34 0 * * * * * * 4502 0 0 G 35 * * * * * 191 * * 4189 * * 4207 * * * 6065 * * * * 35 0 * * * * * * 4502 0 0 W 36 * 3245 5210 * 5158 7010 4413 * * 4576 * 5193 * 5239 * * * * 1313 1804 36 0 * * * * * * 4502 0 0 S 37 3184 * * 5472 * 5733 5176 2367 4075 5553 * 3876 * 5264 2066 3575 3774 4143 * * 37 0 * * * * * * 4501 0 0 P 38 5509 * * * 4860 * * 1441 * 4752 5639 * 1453 * * * * 2710 * * 38 0 * * * * * * 4502 0 0 L 39 3459 1977 * * * 1259 * * * 4523 * 4647 * * * 3067 4860 * * * 39 0 * * * * * * 4502 0 0 I 40 3882 * * * * * * 2028 * 1661 5756 * * * * * 3007 2229 * 6106 40 0 * * * * * * 4502 0 0 E 41 * * * 0 * * * * * * * * * * * * * * * * 41 31 5544 * 3170 170 * * 4502 1000 0 H 42 * * 5534 * 1630 * 1307 * * * * * * * * * * 5046 3728 2783 42 102 3875 * 3474 136 * * 4496 1641 0 V 43 1007 * 5014 3799 * 5537 * * * * * 6377 * * 4170 3177 2660 4584 * * 43 48 4947 * 3629 122 * * 4496 1344 0 H 44 5232 * 1071 2560 * 4810 3954 * 6003 * 4788 4441 * * * 3087 6377 * * * 44 54 4771 * 3974 95 * * 4496 1590 0 P 45 3966 * 2950 3535 * 5626 * * 2561 * * 6185 1763 5197 4612 3465 4921 5038 * * 45 31 5557 * 4207 80 * * 4641 1349 0 S 46 * 5818 3973 4085 * 2611 * * * * * * 2805 * 1134 4788 * 4612 5626 * 46 37 5318 * 4170 82 * * 4641 1176 0 R 47 5638 * * 5094 5963 * 2427 * * * * * * 3854 1099 * * * * 2235 47 23 * 5963 * * * * 4638 0 0 S 48 3317 * * * 1712 * * * * 5437 * 5603 2651 5261 * 5613 * * * 1535 48 21 6087 * 4170 82 * 0 4622 1000 1000 M 49 4610 * 2155 6139 5367 * * * 2757 * 3964 6901 * 4685 1321 5611 5960 * * * 49 0 * * * * * 0 4622 0 1000 A 50 4390 * 4518 5367 * 2841 * * * * 5183 2088 * 5960 * 3351 1807 4601 * 4610 50 0 * * * * * 0 4622 0 1000 T 51 5640 * * * * 3732 3950 * 3943 * * 3353 * 4902 2175 2032 3068 * * 4096 51 30 5603 * 3322 152 * 0 4622 1000 1000 Y 52 4610 * * * 5160 * * 4128 * * * * * * * 1585 5219 4615 * 1081 52 0 * * * * * 0 4622 0 1000 W 53 * * * * * * * * * * * * * * * * * * 0 * 53 0 * * * * * 0 4622 0 1000 S 54 6813 * 4845 2698 * * * 5942 4262 4312 * * 5367 1794 * 4693 2089 4225 * 4521 54 220 * 2825 * * * 0 4622 0 1000 Y 55 * 4936 * 5076 * * * 6131 * 2736 1459 * 4039 * * 2580 2925 5208 * 5457 55 81 * 4190 * * * 0 4476 0 2671 W 56 * 2175 * 5735 4057 3600 * * * 5659 * * * * * * * * 855 4481 56 59 * 4644 * * 875 1136 4393 0 2960 K 57 4507 * * 3605 * 1946 * * 1239 * * 6236 * * 5121 3178 4708 * * * 57 58 * 4658 * * 2403 302 4500 0 2541 L 58 3462 5817 * * * 4465 * * * 956 5279 4741 2500 * * 6012 4360 5233 * * 58 218 * 2834 * * 852 1165 4563 0 2542 P 59 3819 * * * * 4805 * 3986 * * * * 307 * * 5502 * * * * 59 34 * 5420 * * 1553 601 4563 0 2544 F 60 4129 5826 * * 3347 * 5207 4909 * 2952 1509 * * 5062 * 3594 2804 * * 5063 60 46 * 4988 * * 413 2006 4582 0 2158 F 61 4650 4517 * * 1087 5089 * 2052 * 3519 * * * * * * 6088 4961 * 4602 61 0 * * * * 931 1073 4648 0 1720 G 62 4603 * 2287 4581 * 1475 * * 4641 * * 3828 6260 4236 4004 4125 * * 6200 4557 62 0 * * * * 0 * 4682 0 1282 E 63 2617 2008 5831 2668 * 3231 * 3511 * 4776 * * * * * 2943 5269 5227 * * 63 0 * * * * * * 4660 0 0 K 64 5027 * 5227 * 5732 3838 3938 6198 3458 * * 5879 5266 2918 3115 3286 1898 * 5472 * 64 33 * 5472 * * * * 4660 0 0 D 65 * * 1199 4011 * 5877 6329 * * * * 3084 * 4496 3061 2916 4101 * * * 65 0 * * * * * 0 4626 0 1000 L 66 2048 * * 2287 * 4597 5963 5458 * 5005 4549 6409 2067 * * 3056 6346 5935 * * 66 19 * 6219 * * 0 * 4601 0 1000 G 67 1735 * 3437 6460 * 4307 * 5252 * * 6560 3275 5656 4042 4908 2064 4258 * * * 67 20 6179 * 1000 1000 0 * 4847 1000 1000 V 68 2329 * * 1863 * 4802 * * * * * * 6014 1579 5338 5760 5038 4510 * 5474 68 0 * * * * * * 4863 0 0 I 69 3209 * * * * * * 2780 * 4833 * * * * * * * 492 * * 69 22 6014 * 4524 64 * * 4863 1000 0 V 70 * 5363 * 5289 4334 * 4605 2707 * 956 3157 * * * * * * 4058 * 5748 70 0 * * * * * * 4800 0 0 S 71 1859 * * 6227 4716 3674 * * 3608 4740 5861 4309 6232 3840 3686 2726 4083 * * 4777 71 40 * 5185 * * * * 4800 0 0 E 72 2158 * * 781 * * 6080 * 4585 * * 4840 * 4891 5521 5170 5686 * * * 72 38 5258 * 1000 1000 * 0 4749 1000 1000 L 73 5356 * * * * * * 1565 * 1024 * * * * * * * 2777 * * 73 0 * * * * * 0 4833 0 1000 E 74 3477 * * 1252 * 3436 4954 * * * * 3211 * 2536 4566 5517 6671 6477 * * 74 0 * * * * 0 * 4833 0 1000 A 75 1854 * * 2116 * 4440 4439 * 3945 * * 3585 * 4336 3813 3845 4010 * * * 75 0 * * * * * * 4881 0 0 C 76 2792 748 * * 3568 * * 3854 * * * * * 5386 * * 6971 5296 5652 5085 76 0 * * * * * * 4881 0 0 H 77 4662 * * 6542 * * 4225 4365 3136 1238 * * * * 2038 * 4495 5498 * * 77 0 * * * * * * 4881 0 0 R 78 2185 * 4543 6377 * * * * 1657 * * * * 2742 3566 2671 * 5868 * * 78 0 * * * * * * 4881 0 0 A 79 2024 5069 4501 1530 * 5748 6282 * * * * 6502 * 3673 4790 4589 3681 4122 * * 79 0 * * * * * * 4881 0 0 Y 80 * 5398 * * 1977 * 1662 * 5638 * * 2866 * * * * * * * 2005 80 0 * * * * * * 4729 0 0 P 81 3486 4711 6628 5232 5154 * * * 5510 * * 4925 865 4703 5202 3187 5137 * * * 81 0 * * * * * * 4729 0 0 D 82 4513 * 1736 4436 * 1769 * * 4231 * * 2422 * 5443 * 6071 4695 * * * 82 0 * * * * * * 4729 0 0 H 83 2479 3546 3622 1866 * 3838 2802 * 4657 * * 5096 * * * 4422 * * * 4302 83 0 * * * * * * 4729 0 0 H 84 * * * * 3469 * 3122 * * * * * * * * * * * 5090 386 84 0 * * * * * * 4717 0 0 V 85 * * * * * * 5500 1511 * * * * * * * * * 674 * * 85 0 * * * * * * 4717 0 0 R 86 * 5107 * * * * 6095 * 3839 * * * * 4528 246 * * * * * 86 0 * * * * * * 4717 0 0 L 87 * 4879 * * * * * 2506 * 1047 3139 * * * * * * 2377 * * 87 0 * * * * * * 4717 0 0 V 88 4229 * * * 3663 * * 1764 * 2489 6404 3447 * * * 4807 4679 2205 * * 88 0 * * * * * * 4717 0 0 G 89 1925 5494 * * * 590 * * * * * * * * * 6110 * 4807 * * 89 0 * * * * * * 4717 0 0 Y 90 * * * 4807 1174 * * 1676 * * * * * * * * 5922 3152 * 3660 90 0 * * * * * * 4717 0 0 D 91 5905 * 121 * * * * * * * * 3974 * * * * * * * * 91 0 * * * * * * 4717 0 0 A 92 2918 * * 6023 * * * 5311 * * * 1643 2030 5854 6252 3200 3513 4820 * * 92 0 * * * * * * 4465 0 0 Y 93 3788 * * * 5011 4647 6510 3513 2763 * 6232 3503 * 3606 5697 2881 4082 2763 * 3926 93 62 4563 * 1000 1000 * * 4465 1176 0 T 94 2360 * * * * 4449 4818 5056 2663 * * 4439 * * 2466 3342 2803 4982 * 4820 94 0 * * * * * * 4465 0 0 Q 95 * * * 4563 * 3854 3342 * 1608 * * 5466 * 1481 4023 * 5695 * * * 95 0 * * * * * * 4465 0 0 S 96 * 4628 * * 6510 5952 * * 4677 * 5809 * * 4201 2360 2023 3231 1869 * * 96 26 5783 * 1000 1000 * * 4465 1000 0 Q 97 * 4047 * 3831 * * * * 5522 * * * * 1323 1160 * * * * * 97 161 4636 3933 1000 1000 * * 4465 1158 0 G 98 4900 2429 * * * 2942 * 2957 * 6049 * * * * 5731 5715 3347 1432 * * 98 0 * * * * 0 * 4322 0 1747 A 99 2038 5825 * * 4918 5825 5518 4035 * 2925 2574 * * * * 2710 * 2708 * * 99 0 * * * * * * 4460 0 0 C 100 2496 4173 * 1581 * 3623 * * * * 5825 * 5986 * 4980 1921 5456 * * * 100 0 * * * * * * 4460 0 0 F 101 3770 * * 6010 1140 * * 3347 7170 3415 5003 6101 * 6244 * 6185 3335 3935 * 5562 101 0 * * * * * * 4460 0 0 V 102 * * * * * * * 1227 * 1890 4276 * * * * * 3438 2651 * * 102 0 * * * * * * 4460 0 0 V 103 2515 * * * * * * 1449 * * * * * * * 5045 * 1223 * * 103 0 * * * * * * 4460 0 0 F 104 4890 * * * 3481 * 1769 * * * * 3969 * 1305 * 4379 * * * 3910 104 0 * * * * * * 4468 0 0 E 105 * * 6150 5202 * * * * 2173 * * * * 4639 521 * * * * * 105 0 * * * * * * 4409 0 0 G 106 * * * * * 3651 * * * * * * 120 * * * * * * * 106 0 * * * * * * 4381 0 0 R 107 * * * 2043 * * * * 1670 * * * * 2545 1880 * * * * * 107 0 * * 0 * * * 2833 0 0 //