HHsearch 1.5 NAME c7vpdE_ FAM FILE c7vpdE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7vpdE_.a3m DATE Sat Aug 6 08:33:33 2022 LENG 77 match states, 77 columns in multiple alignment FILT 104 out of 162 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.0 EVD 0.4742 2.1489 SEQ >ss_dssp CCTTSSCSHHHHHHHSSSHHHHHHHHHHHHHHHHHHTCTTCCCTTCCCCSSCCCSSCCHHHHHHHHHHHCCCCCCCC >sa_dssp EDEEDCDDECACEDCEDEEDBEEBBDEBBEDADCDDEDEEEDDEEDDCCECECEEECEBDDBACCABDEDECEEEEE >ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHC >ss_conf 97547417999831688558999999999998643333100000455762115667886679999987388475229 >Consensus xxmxxPsiddllxkvdsryxLVxlAAKRARqIxxxxxxxxxxlxxgxxpxvxxxxxxKpvxiALxEIaxgkvxxexl >c7vpdE_ EGIINPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREINAGLLTSEAI >UniRef50_Q04EL5(3-100:107) DNA-directed RNA polymerase subunit omega n=2 Tax=Oenococcus oeni RepID=RPOZ_OENOB E=6e-06 s/c=0.53 id=36% cov=99% --LMYPSVDELLNKVDSRYKLIALASKRAKELEElprlkdellklkreekptdrdkkQIQEIAAQLETLVGPTLDNYKSVKPIGRALEEINAGNVQIDPV >UniRef50_C7MNJ3(3-78:86) DNA-directed RNA polymerase, omega subunit n=4 Tax=Coriobacteriaceae RepID=C7MNJ3_CRYCD E=4e-11 s/c=0.91 id=32% cov=96% --LIEPKIDQLLEETDNdRFLLCAIASRRAHDINDMLRGQRDRAIQLQTAVeIARASNKKPLSIAFDEISKGEVSWD-- >UniRef50_Q3YSH8(1-63:138) DNA-directed RNA polymerase subunit omega n=5 Tax=canis group RepID=RPOZ_EHRCJ E=3e-06 s/c=0.83 id=32% cov=77% -------VEECMGRTNNKFKLVILASQRAHDLNS-----------GACPVIKHKNG-KNTVIALKEIAAKQLDVSSL >UniRef50_B9MR33(2-67:77) DNA-directed RNA polymerase, omega subunit n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR33_ANATD E=2e-10 s/c=1.01 id=28% cov=87% --LLRPGLDELLKYVDNKYTLSVLVAKRARQLLQQAQKKVD---------ITNFNSDKYVTMAVNEVASGKISYKYV >UniRef50_Q14IC5(1-65:72) DNA-directed RNA polymerase subunit omega n=19 Tax=Gammaproteobacteria RepID=RPOZ_FRAT1 E=2e-07 s/c=0.88 id=30% cov=79% -------VEDCLDKVETRFDLVVLASMRANKI----------LKNGYSESMENEKKEKATVVALREIAESEITPEQI >UniRef50_B0S136(1-58:65) DNA-directed RNA polymerase subunit omega n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=RPOZ_FINM2 E=5e-05 s/c=0.84 id=29% cov=77% --MINPSFKKLSEINNSRYALCVMVSKRAR-----------MLIDGKETKLKKAKAQ-PVTTALEEVMEKKV----- >UniRef50_A8TKF0(1-63:145) RNA polymerase, omega subunit n=4 Tax=Proteobacteria RepID=A8TKF0_9PROT E=4e-07 s/c=0.89 id=27% cov=77% -------VEDCIVQIPNRFDLVMAAAQRARDISA-----------GSAITVDRDNDKDPVV-SLREIADQTVNAAVL >UniRef50_A8VRS5(3-68:137) tRNA pseudouridine synthase B n=2 Tax=Bacillus RepID=A8VRS5_9BACI E=4e-09 s/c=0.95 id=27% cov=87% --MLKPSIDSLMTKINSKYTLVTISSQRARELRDYPETAS---------MTVRSTSPNFVGRALEEIDQEILGYKKL >UniRef50_UPI00016C01ED(1-88:93) hypothetical protein Epulo_06790 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01ED E=6e-05 s/c=0.55 id=34% cov=92% --MLEPSYSQLMEKINedagtqmitSRYSIIIATAKRARQIIELINQEASGDLrdrrkvDEALEFKERLKSTKPTSIAVLELYRGDI----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 0 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1896 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 2151 0 0 I 3 * * * * * * * 2700 * 2802 562 * * * * * * 5295 * * 3 0 * * * * * * 4762 0 0 I 4 3494 5890 * 4807 * * * 2241 5980 1512 4730 3284 * * * 5587 3704 4548 * * 4 0 * * * * * * 4778 0 0 N 5 * * 4015 2603 6166 * 4808 * 3194 * * 2330 * 4559 3315 4559 * * * 2117 5 0 * * * * * * 4778 0 0 P 6 * * * * * * * * 5197 * * * 122 * * 4221 * * * * 6 0 * * * * * * 4784 0 0 P 7 3897 * 5223 3955 * 4529 * * 5521 * * * 2502 * 5491 920 6147 * * 4826 7 0 * * * * * * 4812 0 0 I 8 6294 * 6555 * 5094 * * 1317 * 3399 4594 * * * * * 7012 1515 * 4261 8 0 * * * * * * 5261 0 0 D 9 4662 * 1230 1614 * 7109 * * 5094 * * 3288 * * * 5277 6707 4912 * * 9 0 * * * * * * 5261 0 0 E 10 4629 * 1362 2374 * * * 6371 3389 * * 4415 * 4206 5168 3460 4947 6511 * 7162 10 0 * * * * * * 5261 0 0 L 11 4582 1903 * * * * * 4632 * 738 5924 * * * * * 5533 6268 * * 11 0 * * * * * * 5261 0 0 L 12 7162 * * 6325 * * * 2853 6620 872 3009 * 6511 5547 6488 5617 4962 3938 * * 12 0 * * * * * * 5261 0 0 E 13 5199 * 2456 1688 * 6997 * * 2411 6580 6555 5332 6630 4085 5975 3443 4505 5835 * * 13 14 6660 * 3459 138 * * 5261 1000 0 A 14 5864 * * 4671 * 5924 4459 4996 1297 4471 * 4440 5133 3328 3561 6555 6877 3385 * 5353 14 0 * * * * * * 5261 0 0 T 15 3963 6293 * * * 5143 * 2008 5935 5681 6862 5530 * * * 5062 2890 1317 * 6173 15 75 4296 * 1721 521 * * 5259 2038 0 D 16 * * 1251 2909 * 3626 * * 5032 6413 * 2968 2801 5264 * 5248 * * * * 16 61 4591 * 2720 237 * * 5259 2041 0 S 17 * * 4978 * * * * * * * * 1410 * * * 813 5471 * * * 17 30 5621 * 2267 336 * * 5274 1420 0 K 18 * 6498 6124 * * * * * 1581 * * * 4514 6542 859 * 6940 * * 5238 18 0 * * * * * * 5302 0 0 Y 19 * * * * 1552 * * * * * * 5352 * * * * * * * 657 19 0 * * * * * * 5302 0 0 S 20 3107 * 4192 2920 * 4244 * 4742 4426 3976 6461 5248 * 5913 3886 2182 3338 4533 * 6311 20 0 * * * * * * 5302 0 0 L 21 * * * * 5607 * * 3773 * 217 5466 * * * * 6124 * 6765 * * 21 0 * * * * * * 5302 0 0 V 22 3717 3610 * * * * * 3334 * * * * * * * 5516 4633 555 * * 22 0 * * * * * * 5302 0 0 I 23 3803 * * * * 6311 4275 2199 * 2524 3518 4802 * 6313 * 5416 3505 2150 * * 23 0 * * * * * * 5302 0 0 Y 24 2260 * * * 4852 * * 4098 * 1198 4021 * * * * * 5515 2657 * 5620 24 0 * * * * * * 5302 0 0 A 25 647 * * 6477 * 5139 * 5245 * * * * * * * 3888 3950 2617 * * 25 0 * * * * * * 5302 0 0 A 26 708 * * * * 6264 * 6313 5670 * * * * * * 2035 4049 4713 * * 26 0 * * * * * * 5302 0 0 K 27 6363 * * 5006 * * 4490 * 628 5688 6192 * * 3528 2950 * * 6785 * 7149 27 0 * * * * * * 5302 0 0 R 28 * * * * * * * * * * * * * 5865 75 * 5990 * * 5806 28 0 * * * * * * 5302 0 0 A 29 167 * * * * * * 5858 * * * * * * * 4799 5334 5000 * * 29 0 * * * * * * 5302 0 0 R 30 * 5159 * * * * 3423 * 3850 5389 * 6192 * 5031 522 5352 * 6812 * 6468 30 42 * 5133 * * * * 5302 0 0 Q 31 5744 * 3465 2454 * 7270 7337 * 3905 5390 6949 * * 839 6420 * * 5963 * 6622 31 88 * 4078 * * * 0 5280 0 1688 I 32 * * * * * * 5069 709 * 1662 5113 * * * * * * * * 6219 32 203 * 2932 * * * 0 5283 0 2702 N 33 2869 * 4249 4449 6062 6302 * 4740 5713 4903 * 1958 * 3454 2968 3988 4613 3902 * * 33 195 * 2987 * * * 0 5255 0 3164 A 34 2698 * 2894 2522 * 6985 * * 4240 * * 3520 * 3542 4741 2563 4878 4557 * 5613 34 248 5942 2822 4524 64 * 0 5250 1000 3466 Y 35 * * 6037 3241 * 1405 * * 4558 4899 3713 5714 * 3724 * * 5575 * * 2099 35 111 * 3760 * * * 0 5159 0 3795 Y 36 2525 * 4680 4123 4700 6227 * 3498 5459 3168 5395 5598 4705 4262 4814 3001 4246 5153 * 3654 36 268 3773 3373 1839 473 3665 118 5057 1754 3899 S 37 4224 5591 4568 2174 * * 3916 5600 3702 5502 * 3710 4352 2501 3956 4201 4780 * * 5726 37 93 * 4002 * * 3039 187 5074 0 3763 Q 38 4163 * 3592 3244 3563 4972 3747 5636 4068 * 5691 3872 3366 3119 5741 4559 3010 * * * 38 102 * 3878 * * * 0 5025 0 3867 L 39 3554 * * 2784 * * 5857 5196 3750 1220 5374 3719 * 4145 * 5551 4516 * * * 39 95 * 3972 * * * 0 4955 0 4023 G 40 3207 * * 5381 * 2036 3748 4521 4516 4378 * 3597 4334 4493 3017 5098 5434 4023 * * 40 129 * 3546 * * * 0 4916 0 4096 E 41 3472 * 2109 1708 * 3958 * 4480 5415 4081 * * * * * 4397 3975 3851 * * 41 277 * 2515 * * 4421 69 4780 0 4218 G 42 3477 * * * * 1814 5232 3973 * 4848 4808 3873 * 4689 4569 4131 2430 3771 * * 42 46 * 4996 * * 2936 202 4549 0 4450 L 43 2987 * 3964 4982 * * * 5358 * 843 * * 4544 5494 * 5404 4172 4262 * * 43 118 5336 4214 0 * 2159 366 4728 1000 4415 L 44 4316 5094 * 3376 3644 4709 * 1832 5125 2412 3968 * * * 4112 5350 * 4002 * * 44 188 4330 3791 1924 441 2411 301 4774 1698 4409 E 45 2994 * 1611 2365 * 5182 6605 * 5879 5395 * 3603 5145 3326 5626 * 4513 * * * 45 238 4781 3111 0 * 2135 373 4766 1000 4392 Y 46 * * 4434 4245 * 740 3455 * 6597 4351 4864 4339 * * * 4940 5618 * * 6065 46 0 * * * * 4199 81 4671 0 4400 V 47 2228 * 3317 3556 4490 * 6528 3639 4301 6348 * 4750 * 4861 * 2965 * 2681 * 4411 47 0 * * * * 3362 148 4728 0 4424 G 48 4558 6514 4216 2358 * 2979 * * 3461 3647 5569 * 2792 5813 3493 5052 4373 5730 5013 * 48 0 * * * * 2583 263 4773 0 4389 P 49 3483 * 5663 4496 * 4359 * 5284 6746 5561 * * 659 * * 6116 4413 4803 * 6482 49 24 5896 * 0 * 2366 311 4830 1000 4333 L 50 6544 * 6176 7004 4881 * 6825 4220 3388 1388 3399 * 4622 4651 5578 4952 3819 3691 * 5879 50 31 5546 * 0 * 2352 314 4916 1000 4127 V 51 5342 * * 5741 * * * 2786 5468 2645 3702 * * 4567 * * 3278 1296 * * 51 52 * 4824 * * 2548 271 5014 0 3847 D 52 4527 * 2947 2475 * 6365 4870 4622 4009 4601 6016 5357 4275 4203 5285 3194 3589 3427 * * 52 0 * * * * 1612 572 5071 0 3719 T 53 4697 * 4593 2694 * 5000 3590 * 3535 * 6339 3311 5806 7088 3090 2793 3678 4064 * 5219 53 67 * 4453 * * 2272 335 5099 0 3672 H 54 3357 * 3718 3011 4579 4507 6478 * 3882 3864 * 7183 3739 6407 3519 5341 3777 3929 4909 3452 54 83 * 4166 * * 1280 765 5066 0 3465 V 55 4567 6174 2656 3121 6434 * 5696 * 2132 * * 3453 5491 6417 3609 3349 4651 4438 * 5635 55 51 * 4853 * * 1347 720 5113 0 3467 H 56 4221 7133 3921 5023 * 2482 6578 * 4493 5599 * 2775 * 6483 4422 1716 4146 5430 * * 56 48 7578 5196 0 * 600 1556 5148 1000 3222 E 57 6153 * 2112 2687 6628 * 5631 * 2196 6487 5806 2874 5080 5185 5106 * 4225 5005 * 6085 57 16 * 6510 * * 498 1776 5196 0 2662 K 58 6571 * 4530 * * * 5917 * 285 6622 * 3953 * * 4878 * * * * * 58 74 5570 5102 2000 415 0 * 5218 1000 1876 P 59 6173 6819 6078 3962 5176 * * * * 6154 * 3993 731 * 6459 3625 4627 5963 * 4566 59 0 * * * * 0 * 5288 0 1916 L 60 * * * * * * * 3688 * 2154 * * 4014 * * 6203 2751 1078 * * 60 35 * 5379 * * * * 5298 0 0 S 61 * 6292 * 5348 * 3047 * 6229 6488 6460 * 5978 * 6325 * 1873 2239 1772 * * 61 26 * 5789 * * 0 * 5297 0 1565 I 62 5351 6429 * * * * * 1625 4370 3873 3832 5324 * 4293 3767 5503 3908 2347 5778 * 62 0 * * * * 0 * 5298 0 1448 A 63 127 * * * * * * * * * * * * * * 3897 5855 * * * 63 0 * * * * * * 5298 0 0 L 64 6543 * * * 4490 * * 3830 * 672 2952 * * * * * 5001 3533 * * 64 0 * * * * * * 5298 0 0 R 65 * * 4229 1661 * * 4425 5351 3808 5823 6361 5050 * 4431 1510 7081 6543 * 6321 * 65 0 * * * * * * 5298 0 0 E 66 * * * 52 * * * * * * * * * 5861 5805 * * * * * 66 0 * * * * * * 5298 0 0 I 67 * * * * 4339 * * 596 * 2759 5576 * * * * * * 3056 * * 67 0 * * * * * * 5298 0 0 N 68 968 * 4246 4975 6955 4607 5471 4824 * * 5145 3826 * 5983 4586 5446 * 5257 7298 3544 68 0 * * * * * * 5298 0 0 A 69 1939 * 3045 1956 * 5222 5858 * 5003 * 6939 4819 * 4087 4824 3333 4379 * * * 69 0 * * * * * * 5271 0 0 G 70 * * 3012 4993 * 609 5872 * 4076 6462 * 5082 * 5227 6438 5284 6950 * * * 70 0 * * * * * * 5271 0 0 L 71 6121 * 4939 4566 5078 * 5342 6650 1077 3072 4909 5224 * 6107 4598 5679 3602 5093 * 7253 71 0 * * * * * * 5267 0 0 L 72 * * * * * * * 1705 * 2145 6412 * * * * * * 1174 * 6358 72 0 * * * * * * 5236 0 0 T 73 6046 * 3217 * * 3955 * 5793 3530 5347 5374 3444 * 5883 4104 2724 1869 4188 * 6311 73 0 * * * * * * 5082 0 0 S 74 3692 5718 * * 3244 * 5608 4227 * 3808 5242 * 3048 5333 6210 4252 6706 3979 4552 1742 74 0 * * * * * * 5010 0 0 E 75 4302 * 2481 1353 * 5087 * * 2784 * * * * 3413 5600 3728 6155 * * * 75 0 * * * * * * 4919 0 0 A 76 4671 * 2730 * 5482 6102 2771 4284 4326 5224 5068 4012 4656 5275 4244 3494 4780 2879 * 5188 76 0 * * * * * * 4604 0 0 I 77 * * * * * * * 2160 * 897 4236 * * * * * * 2426 * * 77 0 * * 0 * * * 4396 0 0 //