HHsearch 1.5 NAME c7ok0K_ FAM FILE c7ok0K_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7ok0K_.a3m DATE Sat Aug 28 08:28:20 2021 LENG 86 match states, 86 columns in multiple alignment FILT 53 out of 57 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4219 0.2692 SEQ >ss_dssp CCSCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSCCCSSCTTSCSCCSHHHHHHHHHHHTCCCCEEEEECTTSCEEEEECCCC >sa_dssp EEEDEEDCEEDEDCDEDCCEECDDEBCDCBBEDBEEEDECDBEDEECECEDDDCBADCACEDBCAECECEBECEEEEDCECDBDEE >ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHCC >ss_conf 94458999999641242535787889888788764598325704777887999999999973999679999889997986762009 >Consensus xxixxxxxxxxxxxxxxLTkfExARIiGxRAlQisxgApxxixxxxxxxxdPlxIAxxElxxxxiPixIrRxlPxGxxedxxvxeL >c7ok0K_ MTIDKINEIFKENWKNKLTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRIYPNGQVELISVRKI >UniRef50_Q387N1(34-120:131) DNA-directed RNA polymerase subunit, putative n=4 Tax=Trypanosoma RepID=Q387N1_9TRYP E=5e-18 s/c=1.06 id=44% cov=81% -----------------LTKYEVARIIGERARQIVNGTSVLLDSQNgcgtgnslelaegcadpfAASVDPIHITKLELLQGRIPMIVRRTWPDGRTENIP VNEL >UniRef50_Q5UQ32(191-259:396) DNA-directed RNA polymerase subunit 6 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO6_MIMIV E=2e-09 s/c=0.91 id=32% cov=79% -----------------LTYYEIVRILGTRAQQFNYGAKPLI--KGVEGMHPAKMAFVELTAKMTSFIVRRHLPGKKYEDWRIDEL >UniRef50_A6UVZ8(2-55:61) RNA polymerase Rpb6 n=7 Tax=Methanococcus RepID=A6UVZ8_META3 E=4e-09 s/c=1.16 id=40% cov=62% ----------------KYTKFEKARLLGSRALQISDGAFATVESEEKSSG---VIAMNEFKQGKLPLKVKK--------------- >UniRef50_A8MBW4(7-94:104) RNA polymerase Rpb6 n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBW4_CALMQ E=1e-19 s/c=1.11 id=38% cov=100% -TIDELYSLIRDGklpYPPRITKYEFAKIIAVRTRQLMDGAPPLVNPKEIGTSDPVAIAFEELKRGLLPFIIIRRLPNGKRVEYTLKEL >UniRef50_B1L6H7(6-80:84) DNA-directed RNA polymerase, subunit K n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6H7_KORCO E=4e-10 s/c=0.88 id=37% cov=83% ---------------KRLTKFEKVRIISVRAQQIATGSPLFLEENEIPEglTDPIELAKLELEKGKLPILIGRK-EGERVSLINIERL >UniRef50_Q24320(53-126:131) DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=24 Tax=Eukaryota RepID=RPAB2_DROME E=3e-22 s/c=1.43 id=37% cov=81% ---------------KYMTKYERARVLGTRALQIAMCAPIMVEL--DGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDEL >UniRef50_A1RWX0(2-75:81) DNA-directed RNA polymerase subunit K n=2 Tax=Thermoprotei RepID=RPOK_THEPD E=1e-14 s/c=1.09 id=46% cov=80% -----------------LTRFERARIIGIRALQISLGAPVLIQVSE-ELSDPITIAEKELELGLLPIIVVRWTPEGKIQEIPIKYL >UniRef50_D2TEV8(1-74:81) Putative RNA polymerase Rpb6 n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEV8_9VIRU E=2e-11 s/c=0.94 id=30% cov=80% --------------SSYLTRFELARLAGIVELQLQDNKTSVIDSSKTLHDQAVDI----VLNKETDIVIRRILPGDSYEDVSLKTL >UniRef50_P0C9D6(68-145:151) DNA-directed RNA polymerase subunit 6 homolog n=8 Tax=African swine fever virus RepID=RPB6_ASFM2 E=4e-10 s/c=0.85 id=31% cov=76% ----------ERITSNVLTTFEATRLVAVRAQQLAINGSTML---KKKYSSPIDIAKQELFNRKIPLLVMRcikVTPEGQ--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 T 2 * * * * * * * * * * * * * * * * 0 * * * 2 0 * * * * * * 1528 0 0 I 3 * * * * * * * 0 * * * * * * * * * * * * 3 0 * * * * * * 1767 0 0 D 4 * * 943 * * * * * * * * 2083 * * * 2035 * * * * 4 0 * * * * * * 1996 0 0 K 5 * * * 889 * * * * 2159 * * * 2083 * * * * * * * 5 0 * * * * * * 1996 0 0 I 6 * * * * 2500 * * 2589 * 1158 * * * * * * * 2260 * * 6 0 * * * * * * 2051 0 0 N 7 * * * * * * * * * * * 1544 * * * * 1330 * * 1948 7 0 * * * * * * 2051 0 0 E 8 * * * 910 * * * * * * * * * * 2260 1948 * * * * 8 0 * * * * * * 2051 0 0 I 9 * * * * * * * 1415 * 1948 * * * * * * * 1450 * * 9 0 * * * * * * 2051 0 0 F 10 * * * * 1544 * * 1948 * * * * * * * * * * * 1330 10 0 * * * * * * 2051 0 0 K 11 * * * 1969 * * * 3320 1701 * * * * * 2794 * * 2376 * * 11 0 * * * * * * 2654 0 0 E 12 * * 3055 1179 * * * * 3261 * * * * * 1985 3622 * * * * 12 0 * * * * * * 2658 0 0 N 13 * * * * 3427 3055 * 2742 * 2546 * 3788 * * * 2333 3277 3442 * * 13 185 3055 * 1585 585 * * 2658 1000 0 W 14 * * * * 2357 3474 * * * * * * * * * * 1978 * 2013 2229 14 0 * * * * * * 2658 0 0 K 15 3655 * * * * * * * 4220 * * * 1712 3990 3680 1249 * * * * 15 0 * * * * * * 2884 0 0 N 16 * * * * 4194 * * * 1613 * * 1994 2338 * 4225 3107 * * * * 16 0 * * * * * * 3007 0 0 K 17 * * * * * * 4501 * 1434 * * * * * 1504 * * 3731 * 2664 17 0 * * * * * * 3125 0 0 L 18 * * * * * * * 3711 * 494 2840 * * * * * * * * 3754 18 0 * * * * * * 3450 0 0 T 19 * * * * * * * * * * * * * * * 4999 46 * * * 19 0 * * * * * * 3456 0 0 K 20 * * * * * * * * 712 * * * * * 1818 5591 4661 * * 4449 20 0 * * * * * * 3463 0 0 Y 21 * * * * 890 * * * * * * * * * * * * * * 1119 21 0 * * * * * * 3463 0 0 E 22 * * * 0 * * * * * * * * * * * * * * * * 22 0 * * * * * * 3463 0 0 I 23 4661 * * * 5060 * * 2961 1500 4157 * * * 5453 1912 * 5830 3537 * * 23 0 * * * * * * 3463 0 0 A 24 187 * * * * * * * * * * * * * * * 4661 3604 * * 24 0 * * * * * * 3463 0 0 R 25 * * * * * * 5482 * 4077 * * * * * 153 * * 5734 * * 25 0 * * * * * * 3463 0 0 I 26 * * * * * * * 689 * 2463 * * * * * * * 2335 * * 26 15 * 6586 * * * * 3463 0 0 I 27 4146 * * * * * * 1217 * 1560 4397 * * * * * * 2981 * * 27 0 * * * * * 0 3463 0 1000 S 28 3841 * * * * 239 * * * * * * * * * 3597 * * * * 28 0 * * * * * 0 3463 0 1000 A 29 1528 * * 3530 * * * 3502 * * * * * * * 4628 2018 2388 * * 29 0 * * * * * 0 3463 0 1000 R 30 * * * * * * * * * * * * * * 84 * * 4146 * * 30 0 * * * * * 0 3463 0 1000 A 31 180 * * 4146 * * * * * * * * * * * 5017 5052 * * * 31 0 * * * * * 0 3463 0 1000 L 32 * * * * 5330 * * 5467 3521 656 6005 * * 3183 4082 * 5436 * * 5432 32 0 * * * * * 0 3463 0 1000 Q 33 * * * * * * * * * * * * * 0 * * * * * * 33 0 * * * * * 0 3463 0 1000 L 34 * * * * 4448 * * 794 * 1406 * * * * * * * * * * 34 0 * * * * * 0 3463 0 1000 S 35 1614 * * * * * * * * * 5052 4448 * 4146 * 966 * 5114 * * 35 0 * * * * * 0 3463 0 1000 M 36 5436 * 3116 * * * * 3578 5851 3377 1331 3759 * 5916 * 3497 5341 * * 3984 36 0 * * * * * 0 3463 0 1000 G 37 * 5483 * * * 468 * * * * * 1974 * * * * * * * * 37 0 * * * * * 0 3463 0 1000 A 38 346 * * * * 4657 * * 4146 * * 5088 * * * 4094 5114 * * * 38 0 * * * * * 0 3463 0 1000 L 39 4116 * * * 5124 * * * 3869 6017 * * 692 5822 5930 3484 4146 * * 5017 39 0 * * * * * 0 3463 0 1000 P 40 3345 * * * * * * 3177 * 4464 4116 * 1647 * * 4146 4657 1875 * * 40 0 * * * * 0 * 3463 0 1000 L 41 * * * * 3091 * 5453 4237 * 1388 2949 * * 6017 * 4124 2914 4157 * 4894 41 0 * * * * * * 3463 0 0 I 42 * * * 5487 * * * 1260 * 2734 * * * * * * 6031 1341 * * 42 223 5201 3104 4087 87 * * 3463 1000 0 D 43 * * 1261 1858 * * 5322 * 5650 6376 * 3565 3026 5807 * * 5325 * * * 43 57 5322 6154 2585 263 2046 400 3293 1000 2226 T 44 * * 5714 5031 * 4877 * 1955 * 2713 * * 3118 * * 3011 2866 2948 * * 44 83 5339 5000 0 * 1009 991 3302 1000 2255 S 45 * * 3922 2339 * 4652 * 5728 2477 * * 3733 3203 4036 5131 2527 4977 5676 * * 45 286 * 2473 * * 350 2215 3387 0 1941 N 46 5835 * 4694 2166 * 3551 * * 2083 4872 * 2711 5870 5412 5137 3373 4400 * * * 46 363 4103 2607 2977 196 3757 111 3473 1492 1790 L 47 3802 * 2688 * * 4908 * 2927 3440 2617 * 5417 5381 5064 * 3823 3052 3562 * * 47 158 * 3269 * * 1004 996 3459 0 2380 K 48 3185 * 5505 3213 * 1241 * 5795 3108 3955 * * 3609 * * 4142 * * * * 48 99 4867 4969 4000 93 746 1309 3445 1000 2443 S 49 4457 4839 5672 2026 * 2942 3581 4804 5612 4829 6140 * * * 4271 2566 4340 5457 * 4563 49 42 5127 * 1000 1000 221 2817 3440 1000 2158 D 50 4777 * 2829 * * 5112 * 4266 5553 3718 4441 * * * 4491 3055 1757 3045 * 5898 50 96 5585 4519 3807 107 0 * 3458 1000 1000 D 51 * * 616 5786 * * 4425 * * * * 4368 * 4109 * 2787 4995 * * * 51 49 * 4895 * * 947 1055 3441 0 1461 V 52 3281 * * * * * * * * * * * 372 * * 3475 * 4850 * * 52 0 * * * * 717 1353 3442 0 1586 I 53 4432 * * * * * * 1860 * 1147 5466 * * * * * * 2294 * * 53 0 * * * * 0 * 3439 0 1000 S 54 4120 * 1800 4093 * 6298 5116 4960 3705 3428 4122 4719 * 3710 4610 4981 5976 3792 * 5573 54 0 * * * * * * 3462 0 0 I 55 5078 * * * * * * 341 * 4385 3276 * * * * * * 5057 * * 55 83 * 4155 * * * * 3462 0 0 A 56 74 * * * * * * * * * * * * * * 5713 5004 * * * 56 0 * * * * * 0 3324 0 1000 E 57 5769 * * 2616 3616 * * 4664 2561 3738 2367 5433 * 5769 3167 5982 5439 5510 6321 4910 57 0 * * * * * 0 3324 0 1000 E 58 6197 * * 1847 * 6002 * 4881 2116 3383 5433 4258 * 4054 4434 * * 3976 * 3523 58 0 * * * * * 0 3324 0 1000 E 59 * * 4069 89 * * * * * * * * * * * * * * * * 59 0 * * * * 0 * 3324 0 1000 L 60 * * * * 2520 * * 5019 * 584 * * * * * * * 3627 * 4420 60 0 * * * * * * 3462 0 0 K 61 4551 * 4044 2430 4658 * 5600 5573 2263 2812 * 5245 * 6575 3218 4925 4447 5186 * 5124 61 0 * * * * * * 3462 0 0 R 62 2826 * * 3260 * * * * 3320 4708 * 2349 * 1901 3183 5566 5573 * * * 62 0 * * * * * * 3462 0 0 G 63 * * 5765 * * 1396 * * 1837 * * 3025 * * 2330 * * * * * 63 0 * * * * * * 3462 0 0 V 64 4633 * * 4155 * * * 3454 1309 3006 4447 * * * 4154 5600 6232 2753 * * 64 0 * * * * * * 3462 0 0 L 65 * * * * * * * 882 * 1866 5934 * * * * * 3090 4344 * * 65 0 * * * * * * 3462 0 0 P 66 * * 3761 * * * * * * * * * 281 * 4122 4447 * * * * 66 0 * * * * * * 3462 0 0 I 67 * * * * 2153 * * 1381 * 2008 3086 * * * * * * 5331 * * 67 0 * * * * * * 3462 0 0 T 68 * * 4691 * * * * 1477 3493 2936 * * * * * 3901 2190 3375 * * 68 0 * * * * * * 3462 0 0 I 69 * * * * * * * 902 * 5600 * * 5019 * * * * 1274 * * 69 0 * * * * * * 3462 0 0 R 70 * * * * * 5325 * 3466 2807 * 4658 * * * 636 * * 4898 * 5331 70 0 * * * * * * 3462 0 0 R 71 * * * * * * * * 5112 * * * * * 42 * * * * * 71 71 4385 * 1585 585 * * 3449 1000 0 I 72 * * * 5157 5104 * 3757 3242 3717 * * * * 5459 2768 * 3839 2820 5387 1825 72 56 * 4724 * * * * 3467 0 0 Y 73 * * * * 3404 * * * * 732 5082 5066 * * * * 3330 * 3042 5419 73 45 * 5031 * * 0 * 3454 0 1000 P 74 * * * 4659 * * * * * * * * 179 4865 * 4541 * * * * 74 0 * * * * 0 * 3464 0 1000 N 75 * * 1355 3892 * 2463 * * * * * 1603 * * * 5012 * * * * 75 0 * * * * * * 3486 0 0 G 76 * * 4079 4672 * 408 6084 * 3565 * * * * 5418 * 5306 * * * * 76 0 * * * * * * 3486 0 0 Q 77 3997 * 3946 5534 * 4870 * * 2124 * 5905 5374 * 3988 3079 1791 4045 * 6000 * 77 0 * * * * * * 3486 0 0 V 78 * * * 3974 3425 4822 6302 4135 * * * * * * 4543 * 4016 2635 * 1081 78 0 * * * * * * 3418 0 0 E 79 * * * 529 * * * 5222 * * 5090 * * 2912 * 4571 * 3724 * * 79 0 * * * * * * 3418 0 0 L 80 * * 968 3775 * * * * * 2422 * 3325 * * 5090 4822 3947 * * * 80 0 * * * * * * 3418 0 0 I 81 * * * * 4538 * * 1643 * 4008 * * * * * * * 2798 1366 4543 81 0 * * * * * * 3418 0 0 S 82 3894 * * 5302 4538 6138 6105 * 3100 * * 4571 1861 * 3629 1933 4086 * * * 82 0 * * * * * * 3418 0 0 V 83 * 5966 * * * * * 2203 * 1506 * * * * * * 5885 1330 * * 83 0 * * * * * * 3418 0 0 R 84 6267 * 2077 3198 * 4849 * * 2551 * 4912 2874 * 4525 4161 3039 * * 4472 * 84 0 * * * * * * 3356 0 0 K 85 * * * 650 * * * * 2611 * * * * 5812 3568 * 3989 * * 4876 85 0 * * * * * * 3350 0 0 I 86 * * * * 4736 * * 3828 * 165 * * * * * * * * * * 86 0 * * 0 * * * 3344 0 0 //