HHsearch 1.5 NAME c7kugD_ FAM FILE c7kugD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7kugD_.a3m DATE Sat Jul 3 08:38:27 2021 LENG 96 match states, 96 columns in multiple alignment FILT 102 out of 653 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.4 EVD 0.4360 0.1621 SEQ >ss_dssp CHHHHHHHHHHHHHTSCHHHHHHHHHHHTTTTSCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHSHHHHGGGGGGCCSSCCCCCHHHHHHHHHHCC >sa_dssp EDEEBDECBDDBAEDBDEDCBCAACCDCACEDEDDDDBEDABEECECDDDEADDCCDEABDDADEEECBEDAEECCEEDEDEDCCBCEABCDBCDE >ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC >ss_conf 979999999999962999999999999733788857899999996799999999999999998376779999999853035788579999986279 >Consensus xxxxLrexlxxxlxxLxxrErxIlxxryGlxxxxxxTlxEiaxxlgiSrerVRQiexrAlxKLRxxxxxxxlxxxlexxxxxxxxxxxxxxxxxxx >c7kugD_ SFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTXSKLRHPSRSQVLRDYLDGSSGSGTPEERLLRAIFGE >UniRef50_B0TC28(173-251:252) RNA polymerase sigma factor n=7 Tax=Clostridiales RepID=B0TC28_HELMI E=3e-11 s/c=0.88 id=23% cov=82% ----------KVRRRLNKKEREILTLRYGLSDGTPKTQQTVADLLNISRSYVSRIEGRGIRKLMKEYLREITGSGEEQASGEKEESNK-------- >UniRef50_UPI0001C32423(230-298:300) RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32423 E=0.0001 s/c=0.69 id=24% cov=60% ------ETVRRTVEHLPSPQRDVIKLRFGLEEDRtPLPHAQIGRRLALATAQVRAIEREALARL--------------------------------- >UniRef50_D2B866(99-167:171) RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B866_STRRD E=0.0003 s/c=0.67 id=23% cov=72% ----LRRVLMDALRALPPRQRAVVVLRYWEDLGE----TQTAEILGCSAGTVKSQASKALTKLRSAIGAESVEGLI-------------------- >UniRef50_A3SFQ6(148-209:223) RNA polymerase sigma factor n=2 Tax=Sulfitobacter RepID=A3SFQ6_9RHOB E=0.0004 s/c=0.74 id=25% cov=66% SQTLIRARLLEAMERLQPMDREVLRARTLQQPPE--SIQDLATRMEVTPAKLRQIERRAMSRLK-------------------------------- >UniRef50_D2MLC6(34-116:883) Two component regulator propeller domain protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLC6_9BACT E=2e-09 s/c=0.76 id=21% cov=88% -----RELVRKLLKKLPESERTVMTLYYLG----EMTTKEIGKFLGVSMNTITSRLHRARKRLQEEEEI-LVQEVLEGVQLSNNFTENIAQKV--- >UniRef50_B2V6R4(144-205:213) RNA polymerase sigma factor n=2 Tax=Sulfurihydrogenibium RepID=B2V6R4_SULSY E=3e-05 s/c=0.80 id=21% cov=59% ----LLEKISEAIDKyLDDIEKKIIQYLY----FEEKDPKEISEIMNISLGRISQLKSRAVEKLK-------------------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 2184 * * * * * * * * * * * * * * 359 * * * * 1 0 * * * * * * 2721 0 0 F 2 * * * * 2801 * 3315 * * 1708 * * * 3254 * * * * 3610 1926 2 0 * * * * * * 3801 0 0 T 3 4739 * 2241 2409 * 3155 * * * * * * * 3210 3901 3613 2700 4651 * * 3 0 * * * * * * 4770 0 0 L 4 4861 * * 3961 3283 * * 2409 * 1465 3024 4652 * * * * 3549 * * * 4 0 * * * * * * 4834 0 0 L 5 * * * * 4875 * * 3594 * 609 2725 * * 5503 5858 5751 * 5787 * * 5 0 * * * * * * 5590 0 0 Q 6 4734 * * 4296 * * 4339 5104 2409 4353 6506 6108 5890 4886 1132 5120 5661 * * 6093 6 0 * * * * * * 5789 0 0 D 7 4315 * 2699 1433 * 4237 4223 * 4693 6317 5439 6785 * 3757 3711 4368 4768 * * * 7 16 6482 * 1000 1000 * * 5890 1000 0 Q 8 3090 5133 3090 2474 6680 6086 5548 5048 3712 3484 4934 5813 * 4477 3612 * 3642 4119 * * 8 0 * * * * * * 5920 0 0 L 9 * * * * * * * 1947 5969 1078 4142 * * * * * * 2363 * * 9 18 6341 * 0 * * * 5999 1000 0 Q 10 3046 * 3716 2331 5809 6446 4198 6373 3934 4399 6402 4504 * 4087 3091 5722 4928 4124 6360 4570 10 0 * * * * * * 6001 0 0 S 11 3430 6310 3333 2129 6810 5032 5696 5455 3050 6539 * 4263 5699 3958 3158 3854 5281 * 6510 * 11 0 * * * * * * 6003 0 0 V 12 1802 4964 * 6544 4904 5314 6526 5012 * 2167 3985 * * 6435 6623 4251 5367 2491 6963 * 12 0 * * * * * * 6001 0 0 L 13 4868 * * * 4533 * * 2365 * 983 2860 * * * 5559 * * 3977 * * 13 70 4392 * 1128 883 * * 6023 2333 0 D 14 3088 6870 3145 2555 * 3227 5750 * 3846 4883 * 3860 * 4150 3374 2918 6978 * * * 14 0 * * * * * * 6032 0 0 T 15 3860 5567 4533 3053 6473 5010 4591 4116 3817 4991 * 4549 6257 5654 3853 3255 2383 4974 * 5093 15 56 4724 * 0 * * * 6032 2311 0 L 16 * 6475 * * 5969 * * * * 155 * 6415 * 6787 * 6098 * 5157 * 6477 16 0 * * * * * * 6054 0 0 S 17 5402 * 2405 3979 * 5210 * * 5127 5134 * 3336 2110 6261 6528 2890 2828 * * 6685 17 25 5860 * 0 * * * 6054 1000 0 E 18 4247 * 2793 1682 6455 5788 6293 * 4371 6568 * 6377 2185 4419 6710 4861 5014 6155 * 5471 18 33 5456 * 0 * * * 6084 1529 0 R 19 5206 * 3660 6537 * * * 6755 2336 5717 6275 5469 6625 4375 974 6402 5522 6808 * 6498 19 0 * * * * * * 6157 0 0 E 20 5776 * 3765 608 * * * * * 5007 * 4956 * 3192 6378 5716 5835 * 6120 5944 20 13 * 6806 * * * * 6157 0 0 A 21 3124 * * 5612 * * 5359 6345 3254 4408 * * 6408 2866 1024 7084 * 6565 * 5827 21 0 * * * * * 0 6164 0 1000 G 22 4235 * 2975 1954 4708 5312 * 4528 3692 4305 5158 6804 * 3785 3779 5125 3913 4742 * 6367 22 0 * * * * 0 * 6164 0 1000 V 23 4901 * * * 6450 * * 1365 * 3387 5933 * * * * * 6674 1259 * 5201 23 0 * * * * * * 6157 0 0 V 24 6391 * * * 4198 * * 1663 * 1176 4566 * * * * * 5944 3095 * * 24 0 * * * * * * 6157 0 0 R 25 5358 6352 * 4563 6558 5053 * 3454 3372 4186 5305 4925 * 3844 1991 4391 3401 4076 5361 4956 25 0 * * * * * * 6157 0 0 L 26 3397 * 5672 6496 5756 5339 3921 * 5715 1365 3950 6906 * 5993 3255 3958 5779 5933 * 3933 26 11 * 7053 * * * * 6156 0 0 R 27 6541 6726 * * 4595 * 5566 5183 6706 4565 5366 * * * 690 * 6426 6624 * 2537 27 50 * 4884 * * * 0 6085 0 1000 F 28 * * * * 1684 * 4820 4521 * 4972 7042 * * 6353 5420 6135 6226 6534 5487 1077 28 335 * 2272 * * * 0 6117 0 2371 G 29 5300 * * * * 420 * 4764 * 2969 * * * 5483 * * * 6151 5259 * 29 172 4776 3723 1541 608 2564 267 5893 2118 4649 L 30 3683 * 6357 5715 3497 4929 * 3006 * 1214 4168 6540 * 4938 5939 6040 6133 6157 4177 * 30 117 5327 4247 3769 110 3733 113 5830 1575 4597 T 31 4756 * 2255 3396 5133 2420 4252 * * 3725 * 3150 6225 4438 6264 5166 4444 5929 * 4659 31 117 * 3687 * * 2688 243 5785 0 4911 D 32 5967 5009 1791 3426 * 2423 * 5917 6197 5574 * 3520 4884 6159 5226 3823 4012 5184 * 6465 32 184 4478 3739 1853 468 777 1264 5698 2073 4897 G 33 4787 * 3181 3357 3676 1718 4883 * 5448 * 6107 3992 3823 5428 6422 6150 5355 * * 3389 33 25 5877 * 1823 479 807 1223 5860 1662 4525 Q 34 5452 * 3763 1506 * 4847 4162 6431 3217 6268 * 6374 4301 3917 3095 4655 4536 * * * 34 121 4547 4742 1246 790 821 1205 6056 2295 3390 P 35 5927 4923 5120 2608 6309 3087 6771 6318 4920 * 5600 5655 1751 4668 4782 4099 3777 5685 6817 * 35 33 6376 6523 2585 263 1049 953 6069 1000 3102 R 36 3764 6312 6515 4851 * 6743 3097 * 2792 2903 3061 * 6637 3631 3280 5676 4677 * 5467 3855 36 13 6777 * 4524 64 432 1951 6025 1000 2616 T 37 6705 * 6736 * * * * 5773 5012 6697 6397 4452 4391 5679 5046 1855 1027 * * * 37 13 6819 * 2322 322 * 0 6144 1000 1000 L 38 4904 5505 * 6697 3626 6485 4488 4218 * 1046 4979 5447 6736 3755 6602 * 5408 4184 6874 5340 38 17 * 6397 * * 0 * 6144 0 1000 D 39 3124 * 3272 2246 * 5367 6016 6023 3059 * 6718 6383 6590 3341 3889 3769 3727 4715 * 6522 39 0 * * * * 0 * 6146 0 1000 E 40 4043 * 2947 844 * 6043 6729 * 5726 * * * * 3034 7276 6613 5200 6052 * 5150 40 0 * * * * * * 6156 0 0 I 41 5430 5199 * * * * * 1270 * 2620 5434 * * * * 5127 3356 2165 * * 41 0 * * * * * * 6156 0 0 G 42 1061 * * * * 1552 * * * * * * * * * 2860 5779 5383 * * 42 0 * * * * * * 6156 0 0 Q 43 3323 * 2945 2385 * 5545 7158 5215 2425 * 6408 5337 5478 3365 3488 4452 5407 6378 * 6528 43 0 * * * * * * 6156 0 0 V 44 4087 * 4484 3146 5558 6528 5548 2798 3896 3812 4156 6356 5933 3404 2931 5405 4903 4103 * 5474 44 0 * * * * * * 6156 0 0 Y 45 6559 6497 * * 2836 * 5978 4073 6881 1171 2441 * * * 6447 * * 6784 * 3242 45 25 5883 * 1855 467 * * 6156 1708 0 G 46 5593 6492 4289 4449 * 771 5156 * 4342 * 6702 2915 * 5727 6447 4816 * * * * 46 16 6497 * 1000 1000 * * 6156 1000 0 V 47 * 5067 * * * * * 1675 5140 2083 4213 * * 6348 * * 5168 1743 * * 47 0 * * * * * * 6156 0 0 T 48 5837 6610 6269 * * 4828 * * 5515 * * 5468 5597 * * 791 1830 * * * 48 0 * * * * * * 6156 0 0 R 49 4068 6347 * 3938 * * 5960 6528 2776 5030 5448 6840 3622 4003 1442 5239 3902 6455 * 6474 49 0 * * * * * * 6156 0 0 E 50 3989 * 4706 899 * 3910 5723 * 6356 * 6903 6401 6892 3890 6733 3056 6511 5156 * * 50 0 * * * * * * 6156 0 0 R 51 4158 6555 5531 6269 * 5524 * * 4564 * * 4030 * 4796 856 4189 3697 * 4533 6674 51 0 * * * * * * 6156 0 0 I 52 3573 * * * * * * 1840 * 5276 * * * * * 6161 4598 848 * * 52 0 * * * * * * 6156 0 0 R 53 5684 5564 * * * 5930 6487 * 4592 * * 5590 * 4412 579 2959 6401 6269 * * 53 0 * * * * * * 6156 0 0 Q 54 5574 * * * * * * * 3568 4940 6673 4727 * 753 3426 3851 4792 6556 * 6368 54 0 * * * * * * 6156 0 0 I 55 5526 * * * 5806 * * 1093 * 2143 4321 * * 5409 4122 5450 6043 3667 * 5844 55 0 * * * * * * 6156 0 0 E 56 3996 * * 1224 * 6880 3669 6928 3554 4406 6356 5710 * 3195 3897 * 6886 4576 * 5410 56 17 * 6389 * * * * 6156 0 0 S 57 3504 6343 5019 3416 * 5130 3897 5781 3005 6106 5624 3485 * 4169 3338 2691 3925 5597 * 5903 57 0 * * * * * 0 6146 0 1000 K 58 4581 * 5970 4160 * * * 5522 2047 6615 5470 * * 3781 1220 4468 4555 * * * 58 0 * * * * * 0 6146 0 1000 T 59 520 5423 * * * 5529 * 4170 * 4859 * * * * * 3858 3839 5109 * * 59 0 * * * * * 0 6146 0 1000 X 60 * * * 5971 3530 * * 2763 5834 1075 3217 * * 6058 3997 5924 * 4652 * 5924 60 0 * * * * 0 * 6062 0 1000 S 61 2812 * 4451 2975 * 4160 * 5921 2233 6991 * 4849 * 4302 2452 3916 4268 * * 7513 61 0 * * * * * * 6146 0 0 K 62 6550 * 6384 6706 * 6729 6100 * 752 5426 5888 5184 * 4751 2235 * 4937 * * * 62 0 * * * * * * 6146 0 0 L 63 * * * * 5965 * * 3134 * 350 4303 * * * * * * 4837 * * 63 23 5992 * 0 * * * 6137 1000 0 R 64 6598 6274 * 5048 * * * * 2295 5944 5680 5686 7011 4105 783 4619 * * * * 64 88 6233 4441 1585 585 * * 6000 1000 0 H 65 4352 6212 5302 2188 * 4594 3989 * 3465 * * 4117 6047 3153 2448 3718 4597 6368 * * 65 84 5216 5065 963 1038 * 0 5650 1574 2026 P 66 2696 * 5888 4131 5530 6076 3912 6272 4579 3072 * 3435 2195 * * 3320 5703 5048 * 4850 66 21 * 6121 * * * 0 5848 0 2732 S 67 3214 6477 3706 3636 * * 5026 3528 5504 3582 4418 5766 4339 4391 5252 3605 4082 2938 5707 5529 67 29 5637 * 1000 1000 2258 338 5790 1000 2767 R 68 4282 * 3609 2875 5841 5615 4554 5925 3563 3850 * 4068 * 4306 2079 5121 4781 4351 * 5756 68 41 5153 * 0 * * 0 5901 1603 2552 S 69 2606 * 4096 4900 5654 4412 6024 3535 3833 3748 5452 3981 5940 * 3424 3586 3519 4406 5841 * 69 32 * 5500 * * 1264 777 5901 0 2552 Q 70 3491 * 4783 2094 5930 * 4445 * 3186 5881 * 4177 4169 3529 2760 4698 5940 * 5705 4954 70 0 * * * * 960 1041 5908 0 2201 V 71 3571 * 3785 5144 4482 3879 5003 5657 3384 2988 4266 4933 * 4085 3809 2981 * 4178 4937 * 71 24 5910 * 0 * 960 1041 5969 1000 1645 L 72 4746 * * 5900 4139 * * 3421 * 816 3952 * * 5503 6283 * 5634 3407 * 6154 72 0 * * * * * 0 5992 0 1000 R 73 3386 * 3918 2850 * 4725 3904 6208 2510 4107 * * 5836 3455 2356 4514 * * * * 73 0 * * * * * 0 5975 0 1000 D 74 4407 5366 2443 2198 * 3093 4585 6079 * 5624 * 3764 4416 4377 3709 4181 * 4939 * * 74 31 5546 * 3322 152 0 * 5942 1000 1000 Y 75 3429 * * 5319 2786 5451 3749 5626 5532 3085 * * * * 5670 5968 * 3782 5561 1511 75 0 * * * * * * 5949 0 0 L 76 4333 * * 5425 3912 5618 5686 3510 5509 1150 4350 * * 5512 4384 5615 * 3962 * 4131 76 0 * * * * * * 5952 0 0 D 77 * * 1803 1456 4960 * * * 3582 * * 3111 * * 3745 5498 * * * 5587 77 0 * * * * * * 5671 0 0 G 78 2115 * * 3872 * 1626 * * 4465 * * * 4724 4538 3177 3212 * 4956 * * 78 0 * * * * * * 5362 0 0 S 79 3233 * 4309 4660 * 4184 * 4613 * 3330 3377 4594 * * 2751 2559 * 4192 * 3356 79 0 * * * * * * 5052 0 0 S 80 4083 * * 3300 * 2235 * * * 2568 * * * 3940 * 2734 3842 4214 4029 4104 80 0 * * * * * * 4888 0 0 G 81 * * * * * 866 * * * 2926 * * * * 3000 3907 * * 3971 3957 81 0 * * * * * * 4620 0 0 S 82 * * 2307 2746 * * * * * 3730 * * * * 2091 1808 4231 * * * 82 122 * 3624 * * * * 4415 0 0 G 83 1541 * * 3439 * 2608 * * 3228 * * 1769 * * * * * * * * 83 0 * * * * * 0 4073 0 1000 T 84 * * * 3128 * 3299 * * * * * 2940 * * 2326 * 1830 2531 * * 84 0 * * * * * 0 3868 0 1000 P 85 * * 3567 2245 2940 * * * * * * * 1065 * * * * 3374 * * 85 0 * * * * * 0 3868 0 1000 E 86 3079 * 3063 3247 * * * 3236 * * * * * 2946 3015 2806 2698 * * * 86 0 * * * * 0 * 3478 0 1000 E 87 * * 1738 1556 * * * * 3132 * * 2921 3134 * * * * * * * 87 0 * * * * * * 3593 0 0 R 88 3503 * 3191 2272 * * * * 2921 * * 2842 * * 1627 * * * * * 88 0 * * * * * * 3593 0 0 L 89 * * * * * * * 2463 * 602 2645 * * * * * * * * * 89 0 * * * * * * 3129 0 0 L 90 1205 * * * 2324 * * * * 2287 * * * * * 2630 * * * * 90 0 * * * * * * 2654 0 0 R 91 2325 * * * * * * * * * * * * 2093 1449 2324 * * * * 91 0 * * * * * * 2654 0 0 A 92 456 * * * * * * * 1883 * * * * * * * * * * * 92 0 * * * * * * 2456 0 0 I 93 * * * * * * * 1994 * * * * * * * * * 417 * * 93 0 * * * * * * 2456 0 0 F 94 * * * * 859 * * * * * * * * * * * * * * 1156 94 0 * * * * * * 1541 0 0 G 95 * * * * * 0 * * * * * * * * * * * * * * 95 0 * * * * * * 1541 0 0 E 96 * * * 0 * * * * * * * * * * * * * * * * 96 0 * * 0 * * * 1541 0 0 //