HHsearch 1.5 NAME c7kikA_ FAM FILE c7kikA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7kikA_.a3m DATE Sat Nov 20 08:35:01 2021 LENG 121 match states, 121 columns in multiple alignment FILT 23 out of 27 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4265 0.2396 SEQ >ss_dssp CTTCEECCEEEECSCHHHHHHHHTCSTTGGGGEEEEECCCCCCCCCCEEEEEEEEEESSCCCCHHHHHHHHHHHTGGGCEEEEEEEEEECTTSCEEEEEE EEEEEEEEECCTTTTCEECCC >sa_dssp EEDCEBDADBDCBECBDEBCEDACDDEDBEECCBDDDEDCECEEEDEBECCCACACADDADBDBDEAADDADEDAEECDBDAAAAACBECEEDCCBABAA AAAEDDACBEDDEDBCBECEE >ss_pred CCCEEECCCCHHHCHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEE EECCCCCCCCCCEEEEEEECC >ss_conf 9720213662000005788988765420555632120056330203442347999717789988999999998402255228999642066897129999 981788322287278888339 >Consensus xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxaxSxrFRlqaKxiFLTYpqCpLxkExixxxLxxLxxxxxixYIxVxrExHqDGxxHlHvL iQxxxrxxixdPrxFDlxxxx >c7kikA_ SPFSIFHPNIQAAKDCNQVRDFITKEVDSDVNTAEWGTFVAVSTRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVL VQNKLRASITNPNALNLRMDT >UniRef50_P31618(11-82:337) Replication-associated protein n=11 Tax=Mastrevirus RepID=REP_TYDVA E=3e-11 s/c=0.97 id=41% cov=60% ---------------------------------------------FRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFAIFFIAIATELHQDGTPHLHCL IQLDKRSNIRDPSFFDL---- >UniRef50_Q67590(22-93:348) Replication-associated protein n=1 Tax=Miscanthus streak virus - [91] RepID=REP_MISV9 E=3e-09 s/c=0.87 id=40% cov=58% -------------------------------------------------SKQFFLTYPHCNLTPSELMKELFSRLTEKIPGYIKVSQEFHKDGDPHLHVL IQLNTKLCTRNPKFFDVQ--- >UniRef50_D2N1G3(21-92:375) Rep protein n=10 Tax=Begomovirus RepID=D2N1G3_9GEMI E=3e-08 s/c=0.83 id=37% cov=60% ---------------------------------------------FCVNAKNIFLTYPKCPIPKEQMLDILRSINCPSDKLFIRVAQEKHQDGSLHIHAL IQFKGKSKFRNPRHFDV---- >UniRef50_Q80GM6(13-73:364) Replication-associated protein n=206 Tax=Mastrevirus RepID=REP_SSVN E=9e-08 s/c=0.95 id=42% cov=51% ------------------------------------------SRRFKHRNVNTFLTYSRCPLEPEAVGLHIWSLIAHWTPVYVLSVRETHEDGGYHIHVL AQS------------------ >UniRef50_C3UV60(5-80:367) Replication associated protein n=6 Tax=Eragrostis curvula streak virus RepID=C3UV60_9GEMI E=2e-21 s/c=1.36 id=34% cov=63% ------------------------------------------SHRFRIQGKAFFLTYSQCPREPKDVGEFLTSHSTlASHVVYVRVQQEKHQDGNNHLHA IVCTSERRDIRDPRIFDF---- >UniRef50_Q0QLC1(13-89:377) Replication associated protein n=9 Tax=Candidatus Phytoplasma RepID=Q0QLC1_PHYAS E=6e-12 s/c=0.93 id=32% cov=62% -------------------------------------------TNFRLQTKDIFLTYSKCPLGKEKIHNHIKQLMESKNQKiaYIISNTENHQDhKEIHT HVLFQLNKRCNLTSQRFFDL---- >UniRef50_Q9M7P9(11-83:378) Replicase n=3 Tax=Porphyra pulchra RepID=Q9M7P9_9RHOD E=1e-07 s/c=0.78 id=31% cov=59% ---------------------------------------------FRLNAKIMFLTYPcQSGLTKEVILQELKKKI--FDIHSVVMSKERGEsgDGYDHF HVLLETKTKKNYKDPRCFDI---- >UniRef50_C7FFR1(3-70:324) Replication-associated protein n=1 Tax=Sclerotinia sclerotiorum hypovirulence associated DNA virus 1 RepID=C7FFR1_9VIRU E=3e-06 s/c=0.78 id=40% cov=44% ---------------------------------------------FDFHAKYVLLTYAQCgELDAFRVMDKLSLLGAECI-----IGREHHEDGGTHLHC FAE------------------- >UniRef50_B1P3D6(19-96:302) Hypothetical RepA protein n=3 Tax=Beet curly top Iran virus RepID=B1P3D6_9GEMI E=7e-06 s/c=0.66 id=37% cov=47% ----------------------------------------------RFQKKNAFLTYSQIGGDfKDYIFEKLKTLLESYVILFLAVSLEHHQpteeqpEG GFHTHCIIQ------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1000 0 0 F 3 * * * * 0 * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 S 4 * * * * * * * * * * * * * * * 0 * * * * 4 0 * * * * * * 1000 0 0 I 5 * * * * * * * 0 * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 H 7 * * * * * * 0 * * * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 P 8 * * * * * * * * * * * * 0 * * * * * * * 8 0 * * * * * * 1000 0 0 N 9 * * * * * * * * * * * 0 * * * * * * * * 9 0 * * * * * * 1000 0 0 I 10 * * * * * * * 0 * * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 Q 11 * * * * * * * * * * * * * 0 * * * * * * 11 0 * * * * * * 1000 0 0 A 12 0 * * * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1000 0 0 A 13 0 * * * * * * * * * * * * * * * * * * * 13 0 * * * * * * 1000 0 0 K 14 * * * * * * * * 0 * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 D 15 * * 0 * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 C 16 * 0 * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1000 0 0 N 17 * * * * * * * * * * * 0 * * * * * * * * 17 0 * * * * * * 1000 0 0 Q 18 * * * * * * * * * * * * * 0 * * * * * * 18 0 * * * * * * 1000 0 0 V 19 * * * * * * * * * * * * * * * * * 0 * * 19 0 * * * * * * 1000 0 0 R 20 * * * * * * * * * * * * * * 0 * * * * * 20 0 * * * * * * 1000 0 0 D 21 * * 0 * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1000 0 0 F 22 * * * * 0 * * * * * * * * * * * * * * * 22 0 * * * * * * 1000 0 0 I 23 * * * * * * * 0 * * * * * * * * * * * * 23 0 * * * * * * 1000 0 0 T 24 * * * * * * * * * * * * * * * * 0 * * * 24 0 * * * * * * 1000 0 0 K 25 * * * * * * * * 0 * * * * * * * * * * * 25 0 * * * * * * 1000 0 0 E 26 * * * 0 * * * * * * * * * * * * * * * * 26 0 * * * * * * 1000 0 0 V 27 * * * * * * * * * * * * * * * * * 0 * * 27 0 * * * * * * 1000 0 0 D 28 * * 0 * * * * * * * * * * * * * * * * * 28 0 * * * * * * 1000 0 0 S 29 * * * * * * * * * * * * * * * 0 * * * * 29 0 * * * * * * 1000 0 0 D 30 * * 0 * * * * * * * * * * * * * * * * * 30 0 * * * * * * 1000 0 0 V 31 * * * * * * * * * * * * * * * * * 0 * * 31 0 * * * * * * 1000 0 0 N 32 * * * * * * * * * * * 0 * * * * * * * * 32 0 * * * * * * 1000 0 0 T 33 * * * * * * * * * * * * * * * * 0 * * * 33 0 * * * * * * 1000 0 0 A 34 0 * * * * * * * * * * * * * * * * * * * 34 0 * * * * * * 1000 0 0 E 35 * * * 0 * * * * * * * * * * * * * * * * 35 0 * * * * * * 1000 0 0 W 36 * * * * * * * * * * * * * * * * * * 0 * 36 0 * * * * * * 1000 0 0 G 37 * * * * * 0 * * * * * * * * * * * * * * 37 0 * * * * * * 1000 0 0 T 38 * * * * * * * * * * * * * * * * 0 * * * 38 0 * * * * * * 1000 0 0 F 39 * * * * 0 * * * * * * * * * * * * * * * 39 0 * * * * * * 1000 0 0 V 40 * * * * * * * * * * 1000 * * * * * * 1000 * * 40 0 * * * * * * 1438 0 0 A 41 0 * * * * * * * * * * * * * * * * * * * 41 0 * * * * * * 1438 0 0 V 42 * * * * * * * * * * * * 1000 * * * * 1000 * * 42 0 * * * * * * 1438 0 0 S 43 * * * * * * * * * * * * * * * 0 * * * * 43 0 * * * * * * 2683 0 0 T 44 * * * * * 3135 2180 * 1926 * * * * * 2824 * 1937 * * * 44 0 * * * * * * 2951 0 0 R 45 * * * * * * * * 3388 * * 2130 * * 565 * * * * * 45 0 * * * * * * 2763 0 0 F 46 * * * * 0 * * * * * * * * * * * * * * * 46 0 * * * * * * 3343 0 0 R 47 * 4098 3596 * * * * * 3755 * * 4482 * * 643 3326 * * * * 47 0 * * * * * * 3420 0 0 V 48 * * * * 2692 * 3755 1831 * 1412 * * * * * * * 3132 * * 48 0 * * * * * * 3420 0 0 Y 49 * * * * * * 3596 * 5045 * * 2426 * 1311 2801 * * * * 2694 49 0 * * * * * * 3420 0 0 S 50 1635 4581 * * * 3132 * * 3816 * * 3812 * * * 2587 2228 * * * 50 0 * * * * * * 3542 0 0 K 51 * * * * * * * * 107 * * * * * * * * 3812 * * 51 0 * * * * * * 3542 0 0 Y 52 3132 * 3279 * * * 4020 3619 * * * 1525 * 4127 * * * * * 2088 52 0 * * * * * * 3542 0 0 L 53 3863 * * * 2541 * * 2076 * 4358 3613 * * * * * 3950 2123 * 3357 53 0 * * * * * * 3559 0 0 F 54 * * * * 100 * * * * 3895 * * * * * * * * * * 54 0 * * * * * * 3657 0 0 L 55 * * * * * * * * * 0 * * * * * * * * * * 55 0 * * * * * * 3657 0 0 T 56 * * * * * * * * * * * * * * * * 0 * * * 56 0 * * * * * * 3657 0 0 Y 57 * * * * * * * * * * * * * * * * * * * 0 57 0 * * * * * * 3657 0 0 P 58 3895 * * * * * * * * * * * 899 * * 1334 * * * * 58 116 3699 * 0 * * * 3657 1000 0 Q 59 * * * * * * 4330 * 1442 * * * * 1173 2847 * * * * * 59 0 * * * * * * 3657 0 0 C 60 * 220 * * * * * 3956 * * * * * * * 3699 * * * * 60 100 3895 * 0 * * * 3657 1000 0 T 61 * * 3813 3895 * 2822 * * * * * 4330 1227 * * 2324 4524 * * * 61 0 * * * * * * 3657 0 0 L 62 * * * 4325 * 3956 * 3376 * 764 * * * * 3253 3385 * * * * 62 0 * * * * * * 3657 0 0 E 63 * * 2926 2063 * 3551 * * * * * 4325 4434 4264 * 2473 2214 * * * 63 96 3956 * 0 * * * 3657 1000 0 P 64 3173 * * * * * * * 1158 * * * 1363 * 4264 * * * * * 64 0 * * * * * * 3657 0 0 Q 65 * * 3102 694 3895 * * * 3253 * * * * 4524 * 4330 * * * * 65 0 * * * * * * 3657 0 0 Y 66 4465 * 2672 1972 4454 * * 4325 3551 * * 3971 * 4434 3895 * * 3699 * 3213 66 0 * * * * * * 3657 0 0 A 67 1902 * * * * * * 1629 * 2782 4434 * * * * * * 2202 * * 67 77 4261 * 1585 585 * * 3657 1000 0 L 68 * 4325 * * 3102 2368 3551 * 4292 1544 3097 * * * 4518 * * * * * 68 0 * * * * * * 3657 0 0 D 69 * * 2318 2335 * * * * 4330 4465 * 3551 * 2127 * 3493 3277 * * * 69 0 * * * * * * 3657 0 0 S 70 * * * 2980 2326 * 2505 4434 2461 * 4325 * * 3010 * 3387 * * * * 70 0 * * * * * * 3657 0 0 L 71 * * * * * * 4261 1433 * 792 * * * * * * * * * * 71 0 * * * * * * 3657 0 0 R 72 4321 * * * 3391 * * 4292 2141 * * 4817 * 3866 3478 3067 3779 * 2389 * 72 0 * * * * * * 3657 0 0 T 73 * * 3416 2796 * 4821 * * 3699 3895 * 2838 * 4529 4454 2366 2644 * * * 73 0 * * * * * * 3657 0 0 L 74 * * * * * * 4245 3615 2534 753 * * * * 3326 * * * * * 74 0 * * * * * * 3657 0 0 L 75 4261 4292 * 4817 * 3895 * 3032 * 1721 3551 4434 * 3495 * 4245 4454 4325 * * 75 116 * 3699 * * * * 3657 0 0 N 76 2572 4315 * 3065 * * * * 4236 4698 * 3306 * * 4339 3282 1924 4223 * * 76 83 4166 * 0 * * 0 3514 1000 1000 K 77 4166 * * 2116 * * 3251 * 4416 * * 4236 2293 * 3304 2297 * * * * 77 0 * * * * 0 * 3514 0 1000 Y 78 * 3895 * * 2534 * * * 2083 * * * * * * 2896 3493 4261 3393 2704 78 143 4574 4261 1000 1000 * * 3657 1000 0 E 79 4454 * 2974 2866 * * 3852 2534 3248 4224 * 2875 * * * 4770 4343 3899 * * 79 190 4221 3839 1000 1000 * 0 3623 1000 1000 P 80 * 4165 * * * * * 1429 2409 * * * 1920 4408 * * * 3773 * * 80 0 * * * * 925 1079 3470 0 1522 L 81 4378 * * * 3254 4208 3597 * 2270 2414 * 3188 * * * 4504 * 2630 * * 81 67 4467 * 1000 1000 * 0 3561 1000 1000 Y 82 * * * * 2024 * * * * * * * * * * 3597 * * * 574 82 0 * * * * * 0 3561 0 1000 I 83 * * * * * * * 802 * 2455 * * * * * * * 2034 * * 83 0 * * * * * 0 3561 0 1000 A 84 2573 * * * * 4148 * 2731 2539 2713 * * * * 2611 * * 3602 * 4201 84 0 * * * * 0 * 3513 0 1000 A 85 4503 4309 * * * * * 1983 * * 3690 * * * * 2920 * 1175 * * 85 0 * * * * * * 3655 0 0 V 86 2102 3744 * * * 3054 * * * * * 3531 * 3232 * 2039 * 2881 * * 86 0 * * * * * * 3655 0 0 R 87 * * * * * * * 4253 2916 3989 * * * 2322 1433 4290 2938 * * * 87 0 * * * * * * 3629 0 0 E 88 * * * 0 * * * * * * * * * * * * * * * * 88 0 * * * * * * 3642 0 0 L 89 4341 * * * 3082 * 2991 * 2577 2048 * 2880 * * 3770 * 3504 * * * 89 0 * * * * * * 3642 0 0 H 90 * * * * * 3770 110 * * * * * * * * * * * * * 90 0 * * * * * * 3642 0 0 E 91 4363 * * 1518 * * * * 3089 * * * * 1187 * * 4455 * * * 91 209 2888 * 1920 443 * * 3642 1556 0 D 92 * * 205 4017 * * * * * * * 3818 * * * * * * * * 92 211 2880 * 0 * * * 3642 1418 0 G 93 * * * * * 211 * * 2880 * * * * * * * * * * * 93 0 * * * * * * 3642 0 0 S 94 * * 4375 2622 * 2061 * * 4592 * * 3304 * 4804 * 2868 2636 * * 3770 94 0 * * * * * * 3642 0 0 P 95 * * 3770 * 4017 * * 3566 4283 3111 * 3304 1690 * * * 3131 * 4455 4555 95 0 * * * * * * 3642 0 0 H 96 * * * * * * 0 * * * * * * * * * * * * * 96 0 * * * * * * 3642 0 0 L 97 * 4455 * * 3770 * 4283 2939 * 991 * * * * * * 3255 * * 3451 97 0 * * * * * * 3642 0 0 H 98 * * * * * * 0 * * * * * * * * * * * * * 98 0 * * * * * * 3642 0 0 V 99 1551 2559 * * * * * 5644 * * * * * * * * * 1092 * * 99 0 * * * * * * 3642 0 0 L 100 * * * * 2608 * * 2617 * 663 * * * * * * * 5550 * 5644 100 0 * * * * * * 3642 0 0 V 101 3231 * * * 2682 * * 1638 * 2293 5550 * * * * * * 2388 * * 101 0 * * * * * * 3642 0 0 Q 102 * 3304 * 2668 * * * * 5550 * * * * 474 * * * * * * 102 0 * * * * * * 3642 0 0 N 103 * * * * 2223 * * * * 1284 * 4121 * * * 4195 1926 * * * 103 0 * * * * * * 3253 0 0 K 104 * * 3194 2348 * * * * 2154 * * 2232 3535 * * 3189 4038 * * * 104 0 * * * * * * 3239 0 0 L 105 3662 * * 2351 * 3184 * * 1707 4027 * * * * * * 2016 * * * 105 0 * * * * * * 3239 0 0 R 106 * * * * * * * * 1614 * * 3662 3916 * 921 * * * * * 106 0 * * * * * * 3239 0 0 A 107 4027 3838 * * 2838 * * * 3259 4227 * * 4091 3535 3189 3191 * 2273 * * 107 0 * * * * * * 3239 0 0 S 108 * 3157 3189 3483 * * 3535 * 4085 * * 1807 * 4290 2783 4027 * * * * 108 0 * * * * * * 3239 0 0 I 109 * * * * 4085 * * 1125 * 2649 * * * * * * 2917 * 3535 3259 109 0 * * * * * * 3239 0 0 T 110 * * * * * * * * 3227 * * * * * 1510 3872 1392 * * 3431 110 0 * * * * * * 3212 0 0 N 111 * * 1302 * * 3431 * * * * * 1615 * * * 2512 * * * * 111 0 * * * * * * 3212 0 0 P 112 4221 * * * * * * 3726 * * * * 378 3303 * * * * * * 112 0 * * * * * * 3273 0 0 N 113 * * * * * * * * 2545 * * 3388 * * 924 2712 4221 * * * 113 0 * * * * * * 3273 0 0 A 114 3301 3052 * * 1789 * 3515 2567 * 3630 * * * * * * * * * 2721 114 0 * * * * * * 3202 0 0 L 115 * * * * 247 * * * * 2667 * * * * * * * * * * 115 0 * * * * * * 3202 0 0 N 116 * * 154 * * * * * * * * 3301 * * * * * * * * 116 0 * * * * * * 3202 0 0 L 117 * * * * 2567 * * 3052 * 905 * * * * * * * 2500 * * 117 0 * * * * * * 3202 0 0 R 118 * * * 1506 * * * * * * * * * 1644 1608 * * * * * 118 0 * * * * * * 1971 0 0 M 119 * * * * 1000 * * * * * 1000 * * * * * * * * * 119 0 * * * * * * 1656 0 0 D 120 * * 1000 * * * * * * * * 1000 * * * * * * * * 120 0 * * * * * * 1656 0 0 T 121 * * * * * * * * * * * * * * * * 0 * * * 121 0 * * 0 * * * 1000 0 0 //