HHsearch 1.5 NAME c7dkhF_ FAM FILE c7dkhF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7dkhF_.a3m DATE Sat Nov 27 08:25:49 2021 LENG 98 match states, 98 columns in multiple alignment FILT 33 out of 37 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.4958 2.9381 SEQ >ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCGGGSTTCHHHHHHHHHHHTTGGGSSCSTTTTCCCCGGGSSSTTTSCCCTTSSCCSSCCCCHHHHGGGSCCC >sa_dssp EEEEEEEEEEEEEEEEEDEEEEEEEECEEECEEBDDDEDDEEEEDDDEEEEDEDEEEDEEEDDEEDEBCEEEEDDEDDEEEEEEEDEDEEDDEEEEEE >ss_pred CCEEEEEECCCCCCCCCCCEEEECCCCCCHHHCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCHHHHHHHHCCC >ss_conf 96012341278758988431366347851000131000245542477421110612598532224544000530110155568777887898730889 >Consensus qdyAxvrYxNxLPxppxxPKllxxpxxxxxxxxxxxxxssLxxexnxxxxixvdxdlGmplDLxxxpgxxxxdxsxxxxxxxxxxLdpxDrxLLrDpx >c7dkhF_ QEYAPIKYQNSLPVPQLPPKLLVYPESPETNADSSQLINSLYIKTNVTNLIQQDEDLGXPVDLXKFPGLLNKLDSKLLYGFDNVKLDKDDRILLRDPR >UniRef50_A2QCB0(15-110:503) Complex: Paf1 was identified by affinity chromatography n=12 Tax=Eurotiomycetidae RepID=A2QCB0_ASPNC E=1e-20 s/c=1.04 id=31% cov=98% QEYiASLRYRNDLPPPDMPPKFLDIPHEGLDRFLTPGFASNLARREE--PNIDVDAEGGMPIDLVGIPGLHLGDESAIMAPENPEPIDQADLALLMTP- >UniRef50_B6JYE9(31-123:464) Putative uncharacterized protein n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JYE9_SCHJY E=0.0002 s/c=0.51 id=28% cov=90% -----VKYHNPLPPPPFPPRLVDIP-NPVRQYADPSFVSNLAQEKAIDFGLE--PEMGMPLDLSSVMGAFEGDSSAMLANQSVTRLDPKDRVLLK--- >UniRef50_A5DPD3(7-110:415) Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DPD3_PICGU E=2e-11 s/c=0.68 id=35% cov=99% QDYiAKVRYINNLPPPPLNPKMIEYnvTNPIPFSTEANQLMSSLFRKENFKTFISaVDEESGMNLNLLNNTDVLESGDNraihSLVKDDVEAKLHEKDRA LLRD-- >UniRef50_Q4P5K3(29-121:703) Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P5K3_USTMA E=0.0002 s/c=0.51 id=28% cov=91% -----VRYPNPIPVPPYPPKLVKIRTEPS-RYANPHFADRLASQQPIP--LMVDVHAGMPIDLANFQNLWEGDLSEVvvpaQAKLEPKHLDDADAFLLQD -- >UniRef50_A9RZZ3(217-296:588) Paf1 complex protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RZZ3_PHYPA E=0.0004 s/c=0.57 id=30% cov=82% -----IKFRNDLPDSTAQPKLMHI-NTDKDRYTRYQFTS---LEKNWKHKLHVEPDLGIPLDLLDISNYKKIDAS--------VPLDPEDAALLLD-- >UniRef50_C4R997(8-113:393) RNAP II-associated protein n=1 Tax=Pichia pastoris GS115 RepID=C4R997_PICPG E=2e-18 s/c=0.88 id=38% cov=99% QDYiAKVRYQNDLPAPPCPPKLLKYEiekEAPQKEFlKDSRLLSALFSKDNFRYLMNETSD-GLDVNYLRIPGIIENEKSlgklfSSYKNLAIENLHPDD RLLLVDP- >UniRef50_P90783(24-102:425) RNA polymerase II-associated factor 1 homolog n=3 Tax=Caenorhabditis RepID=PAF1_CAEEL E=7e-12 s/c=0.91 id=25% cov=82% ------RFTNTVPDVPFDAKFMTCPFVPLGRFVEFQPA---AIYRDYKHAVICDDDMGLNVDL--------IDLKKYDEDPIETEIDEKDNILLED-- >UniRef50_UPI0000E46A2E(15-94:539) PREDICTED: similar to Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae), partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E46A2E E=1e-14 s/c=1.01 id=28% cov=82% -----VKYANSLPDIPFDPKFITYPFEAN-RFVQYNATS---LERNYKHELLAEHDLGVTIDLIN--------PDTYRIPEEHVELDPADEKLLEE-- >UniRef50_Q6C509(5-103:386) YALI0E22022p n=1 Tax=Yarrowia lipolytica RepID=Q6C509_YARLI E=1e-09 s/c=0.65 id=36% cov=94% -----VRYQNELPPPELPPKMLNIPVPPEKlTSLGINILSDMQRRES--PQINVDNDLGMPLDLTEIRGVFEQDDeSGLLPLENLPELDPRDLVLLKEPQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * * * * * * 0 * * * * * * 1 0 * * * * * * 2908 0 0 E 2 * * 568 1618 * * * * * * * * * * * * * * * * 2 0 * * * * * * 2908 0 0 Y 3 * * * * * * * * * * * * * * * * * * * 0 3 3379 146 * 0 * * * 2908 2820 0 A 4 0 * * * * * * * * * * * * * * * * * * * 4 0 * * * * * * 3173 0 0 P 5 * * * * * * * * 1082 * * * 3604 * 2061 3084 3511 * * * 5 0 * * * * * * 3173 0 0 I 6 * * * * * * * 2091 * 2266 3963 * * * * * * 1020 * * 6 0 * * * * * * 3982 0 0 K 7 * * * 4659 * * * * 1465 * * * * * 742 * * * * * 7 0 * * * * * * 4193 0 0 Y 8 * * * * 1789 * * * * * * * * * * * * * * 493 8 0 * * * * * * 4193 0 0 Q 9 4401 7022 4675 * * * 4147 3313 * 5671 * * 4382 2159 2068 2906 3550 * * * 9 0 * * * * * * 4193 0 0 N 10 * * * * * * * * * * * 81 * * * * 4201 * * * 10 0 * * * * * * 4193 0 0 S 11 3506 * 2783 2755 * 4201 * * * * * 2567 2895 * 4675 3502 2905 * * * 11 0 * * * * * * 4193 0 0 L 12 * * * * * * * 4382 * 152 * * * * * * * 4273 * * 12 0 * * * * * * 4193 0 0 P 13 * * * * * * * * * * * * 0 * * * * * * * 13 0 * * * * * * 4193 0 0 V 14 2891 * 1603 3493 * * * * * * * * 1554 * * * 5300 3622 * * 14 0 * * * * * * 4193 0 0 P 15 * * * * * * * 2411 * 4859 * * 527 * * 4979 * 4273 * * 15 0 * * * * * * 4193 0 0 Q 16 * * 5473 4023 * * * * * 3419 * * 632 4909 * 3158 4979 * * * 16 0 * * * * * * 4193 0 0 L 17 2799 3116 * * 1855 * * 5405 * 1750 4384 4384 * * * * * * * 4382 17 0 * * * * * * 4193 0 0 P 18 * * 1866 * * * * * * * * 2897 1159 2799 * * * * * * 18 0 * * * * * * 4193 0 0 P 19 4273 * * * * * * * * 3580 * * 334 * * * 3806 * * * 19 0 * * * * * * 4193 0 0 K 20 * * * * * * * * 191 * * * * * 3838 * * 4201 * * 20 0 * * * * * * 4193 0 0 L 21 * * * * 1446 * * * * 929 3812 * * * * * * * 4779 * 21 0 * * * * * * 4193 0 0 L 22 * * * * * * * 2519 * 867 2653 * * * * * * 3079 * * 22 97 * 3947 * * * * 4193 0 0 V 23 4918 * 2718 2502 * * 4778 * 2309 * * 3219 * 4584 6975 * 2551 3787 * * 23 0 * * * * * 0 4130 0 1195 Y 24 * 3532 * * * * * 1250 * * * * * * * * * * * 1020 24 281 2833 4778 1000 1000 0 * 4130 1690 1195 P 25 * * * 3910 * * * * 4285 * * * 604 * 4369 * 2507 * * * 25 151 3888 4971 1585 585 0 * 4179 1098 1000 E 26 * * 4609 2425 3072 * 3657 4432 4449 3345 * 2477 * * 4998 4424 3528 4643 * * 26 54 * 4772 * * 0 * 4341 0 1000 S 27 3751 * 3705 2236 * * 4784 * 3289 * * 3050 3057 * * 4764 2955 3449 * * 27 0 * * * * 0 * 4362 0 1000 P 28 4402 * 4934 * 4473 2607 * 3685 3939 * * * 1162 * 5184 5552 * 3791 * * 28 0 * * * * * * 4378 0 0 E 29 * * 3431 2796 * * * * 4934 2110 4831 4402 4733 3795 * 2709 3538 3879 * * 29 164 * 3220 * * * * 4378 0 0 T 30 3952 * 4036 2937 4728 4016 4252 * 2226 * * * 4536 * 2713 3232 3717 * * * 30 439 2494 3560 829 1194 0 * 4089 2005 1872 N 31 * * 3918 3045 * * 4547 * 4934 * * 3489 * 1951 1848 4648 4655 * * 4964 31 0 * * * * * 0 4314 0 1489 A 32 3576 * * * 1669 * * * * * * * * 3560 3918 4655 3784 * * 1563 32 114 3713 * 0 * 0 * 4314 1098 1489 D 33 2727 * 3181 2737 4898 * * 4473 3795 3123 * 5436 * * * * 2574 3827 * 4015 33 0 * * * * * * 4378 0 0 S 34 4042 * 2943 4435 * 3017 * 5254 * 3948 * 2550 5020 5368 3882 2808 3158 * * * 34 0 * * * * * * 4378 0 0 S 35 4959 * * 3153 4435 * * 4705 3505 * * 4733 1821 4898 * 2723 4213 * * 3020 35 0 * * * * * * 4378 0 0 Q 36 * * * 3672 * 3036 4382 * 3914 * * 2672 * 2443 3281 3646 * * * 2628 36 0 * * * * * * 4378 0 0 L 37 5368 * * * 1529 * * 4705 5254 1624 * * 4435 * 4863 5552 3785 4898 * 4959 37 34 * 5436 * * * * 4378 0 0 I 38 1751 * * * * * * 2446 * 2772 3166 * 5201 * * 5488 2805 3859 * * 38 118 4980 4406 1000 1000 * 0 4374 1000 1000 N 39 * * 4251 * * * * * * * * 3108 * * * 667 2309 * * * 39 268 * 2561 * * * 0 4090 0 1507 S 40 2999 * 4486 * * * 5199 4494 * * * 3720 * * 2582 1300 3188 * * * 40 0 * * * * * 0 4074 0 2315 L 41 * * * * * * * * * 257 3724 * * * * * 4494 4537 * * 41 276 * 2520 * * 2132 373 4074 0 2315 Y 42 1221 * * * 1818 * * * * * * * * 4320 * 3949 * 3904 * 3242 42 0 * * * * 1174 845 3948 0 2626 I 43 * * * * * * * 3387 * 2251 * * * 3704 1327 2556 4353 * * * 43 0 * * * * 0 * 4212 0 2105 K 44 * * * 1018 * * * 5501 1730 * * * * 4382 3497 * * * * 4435 44 0 * * * * * * 4378 0 0 T 45 * * 3795 2068 * * * * 1945 * 5254 * * 2627 2976 * 3126 * * * 45 0 * * * * * * 4378 0 0 N 46 4768 * 3787 4316 * * * * 5000 5020 5184 1082 2344 * * 3614 * * * * 46 134 * 3497 * * * * 4378 0 0 V 47 * * * * 1976 * 4102 3119 * 2823 * * * * * * * 3623 3506 1933 47 164 * 3222 * * * 0 4118 0 1497 T 48 * * 4617 * * * * 4578 1190 4386 * * 2772 4628 3710 * 2575 * * * 48 228 * 2772 * * 1093 913 4103 0 1877 N 49 * * * * 2702 * 2264 * * * * 3573 1732 * * 3636 4570 * * 2938 49 0 * * * * 1009 991 4034 0 2062 L 50 4056 * * 2118 3196 4517 * * 2989 2355 * 2601 * 3824 * * * * * * 50 0 * * * * 0 * 4075 0 1750 I 51 * * * * * * * 1188 * 1775 2414 * * * * * * 3619 * * 51 60 4607 * 0 * * * 4378 1000 0 Q 52 * * 4316 1981 5020 * 4086 3111 4529 2764 4382 3180 * 3697 * 4733 * * * 5184 52 227 3198 4768 0 * * * 4378 1494 0 Q 53 2811 3831 * 3304 * * * 4609 * * * 4772 * 4764 * * 3645 1024 * * 53 0 * * * * * 0 4341 0 1000 D 54 * * 804 1884 * * * * * * * 4432 4803 * * * 3752 * * * 54 0 * * * * 0 * 4341 0 1000 E 55 2497 * 3050 2402 * 5501 4402 5000 * * * 3584 2512 * * 3795 4898 4382 * * 55 0 * * * * * * 4378 0 0 D 56 * * 1109 1407 * * 4382 * * * * 3811 * 4639 * * * * * * 56 108 * 3795 * * * * 4378 0 0 L 57 4291 3842 * * 4412 4306 * * * 690 3521 * * * * 4732 * 4754 * * 57 0 * * * * 0 * 4105 0 1098 G 58 * * * * * 0 * * * * * * * * * * * * * * 58 0 * * * * * * 4378 0 0 X 59 * * * * * * * 2516 * 2373 924 * * * * * * 3249 * * 59 0 * * * * * * 4355 0 0 P 60 4607 * 3156 4898 * * * * * * * 2463 841 * * * 3766 * * * 60 0 * * * * * * 4378 0 0 V 61 * * * * * * * 2151 * 884 4473 * * * * * * 2412 * * 61 0 * * * * * * 4378 0 0 D 62 * * 448 * * * * * * * * 1905 * * * * * * * * 62 0 * * * * * * 4378 0 0 L 63 * * * * * * * * * 173 * * 4607 * * * * * * 3795 63 102 * 3876 * * * * 4378 0 0 X 64 3410 * * * * 4482 * 2044 * 1747 4202 * * * * 4525 4503 2482 * * 64 0 * * * * * 0 4149 0 1544 K 65 * * 2645 4544 * 2258 * * 2945 * * 1785 * 4493 3621 4555 * * * * 65 240 * 2704 * * * 0 4180 0 1544 F 66 * * * * 3142 * * 1292 4300 4498 2805 2805 * * * * * 4298 4432 * 66 148 * 3358 * * 1409 682 3893 0 2279 P 67 * * * 4422 * * * * * * 4385 * 964 4081 2744 3366 3514 * * * 67 0 * * * * * 0 3979 0 2346 G 68 * * 3267 * 3872 683 * * 4607 * * 3094 * * * 4422 * * * * 68 0 * * * * * 0 3979 0 2346 L 69 3373 * * * 2963 * * 3104 * 2171 4229 * * * * * * 1619 * 4107 69 0 * * * * * 0 3979 0 2346 L 70 * * * * 1425 * 3838 3497 4107 2077 * * * * * * * * 3241 3872 70 0 * * * * * 0 3979 0 2346 N 71 * * 1881 1395 * * * * 4107 3838 * 4429 * * 4169 4321 * * * 3872 71 0 * * * * 2137 372 3979 0 2346 K 72 * * * 3480 * 1622 4296 2580 3223 * * 3040 * 4391 * 3459 * * * * 72 63 4544 * 1000 1000 * 0 4133 1000 2075 L 73 4439 * 591 3040 * 4479 * * * 4540 4296 5079 * * * * * * * * 73 0 * * * * 1473 644 4133 0 2075 D 74 4380 * 1921 2085 * * * * 2580 3159 * 4847 4050 * * 4553 4826 * * * 74 137 3469 * 0 * 701 1378 4186 1590 1608 S 75 * * 3612 4915 * * * * 3374 * * 3624 * * 4780 676 4461 * * * 75 247 3087 4665 1857 466 * 0 4296 1577 1000 K 76 1965 * * 3368 * 4569 * * 2131 * * 4612 * * * 2621 4078 3663 4845 * 76 81 * 4200 * * * 0 4249 0 1363 L 77 4469 * * * * * * 2479 * 2213 3635 * * * * 3048 4555 4143 * 1948 77 151 4143 4555 2000 415 * 0 4152 1000 1759 L 78 4419 * 4008 * 4476 * 4731 3566 * 2407 3940 2921 * 2744 3743 5124 * 4490 * 4602 78 0 * * * * 1842 472 4099 0 1993 Y 79 1747 * * 4025 * 4434 * 3758 3565 * * * 2514 * * 2972 * * * 2906 79 125 4761 4431 3322 152 * 0 4093 1000 1797 G 80 * * 1788 * * 4383 * * 3201 4434 4717 3457 1843 5161 * 3800 * * * * 80 0 * * * * * 0 4042 0 2214 F 81 5632 * 3353 2413 3313 * * 4561 * 2392 * 5161 2780 4392 * 3436 * * * 4408 81 65 4504 * 0 * * 0 4042 1000 2214 D 82 4526 * 3313 2629 * * 4717 3260 2841 * * 2683 5161 5632 * 3176 * 3353 * * 82 0 * * * * 1556 600 4042 0 2214 N 83 * * * 3248 * 4292 3174 4620 * 3516 * 3196 2253 3083 4659 4757 * 4469 * 4434 83 0 * * * * 1542 607 4093 0 1797 V 84 4548 * * 3852 * * 4469 4833 4197 4537 * * 1632 * * * 3301 1806 * * 84 0 * * * * 982 1018 4152 0 1445 K 85 4596 * * 2656 * * 3756 * 2183 * * 3790 1962 4554 3597 * 5802 4894 * * 85 0 * * * * 0 * 4254 0 1000 L 86 * * * * * * * 2396 * 466 4620 * * * * * * 4462 * * 86 0 * * * * * * 4291 0 0 D 87 3797 * 1014 4631 * * 1670 * * * * * * 4473 * 4905 * * * * 87 0 * * * * * * 4291 0 0 K 88 3727 * 4288 3439 * * * * 4712 * * 4631 658 5175 * 4601 * * * * 88 59 4631 * 1585 585 * * 4291 1000 0 D 89 2358 * 2723 2274 * * 3533 4914 2030 * * 4601 * * 4608 * * * * * 89 0 * * * * * * 4291 0 0 D 90 * * 0 * * * * * * * * * * * * * * * * * 90 0 * * * * * * 4291 0 0 R 91 2958 * * 2223 * * * * 4905 3377 * 4228 * * 1077 * * * * * 91 0 * * * * * * 4291 0 0 I 92 1953 * * 3144 4288 * * 3450 4178 2264 4473 * 5179 * 4788 4914 * 3636 * * 92 0 * * * * * * 4291 0 0 L 93 * * * * * * * * * 0 * * * * * * * * * * 93 0 * * * * * * 4291 0 0 L 94 * * * * * * * * * 49 4905 * * * * * * * * * 94 0 * * * * * * 4291 0 0 R 95 * * * 2765 * * * * 2548 4662 4821 * * 4261 1192 * * 3093 * * 95 0 * * * * * * 4292 0 0 D 96 4195 * 396 2918 * * * * * * * * * * * * 4236 * * * 96 0 * * * * * * 4101 0 0 P 97 * * * * * * * * * * * * 0 * * * * * * * 97 0 * * * * * * 2754 0 0 R 98 * * * * * * * * * * * * * 1000 1000 * * * * * 98 0 * * 0 * * * 1518 0 0 //