HHsearch 1.5 NAME c7dkhC_ FAM FILE c7dkhC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7dkhC_.a3m DATE Sat Nov 27 08:27:45 2021 LENG 52 match states, 52 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.1 EVD 0.4885 3.6312 SEQ >ss_dssp CCCCCCHHHHHHHHTCCCSSCTTGGGGCSSCCCCTHHHHHHHHHTHHHHTCC >sa_dssp EEEEEDEEDDEDEEEEEEEEDEECDEEEEEEEEEDDDEECDEEEEDEEEEEE >ss_pred CCCCCCHHHHHHHCCCEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCC >ss_conf 9610156777540355220132012103676736775655554445316689 >Consensus xskxxDpxlxeixxxErxxxDhNsxLRGxKptdFsxvxKdaElxxxksxpgx >c7dkhC_ DSEVSDPVVVETXKHERILVDHNSALRGAKPINFGYLIKDAELKLVQSIKGS >UniRef50_B9W773(145-199:370) RNA polymerase II elongation accessory factor, CDC73 family, putative n=10 Tax=Saccharomycetales RepID=B9W773_CANDC E=0.0001 s/c=0.87 id=49% cov=98% --KLDDPQLERISKFERESVDHNAALRGTKNIDFGYLVSDAkkfmhELKRTKHMPGT >UniRef50_C4R1E6(135-181:365) Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p n=1 Tax=Pichia pastoris GS115 RepID=C4R1E6_PICPG E=8e-13 s/c=1.59 id=40% cov=92% ----DDPLLKEIASNERVLIDHNKVLRGLKPKDFSSVAKDCELRILKEKPA- >UniRef50_B8M8X5(192-233:474) Pol II transcription elongation factor subunit Cdc73, putative n=8 Tax=Eurotiomycetidae RepID=B8M8X5_TALSN E=2e-10 s/c=1.60 id=42% cov=83% -TKVIDPQLQEIYNGERKLGDRNTVLRGIKPTDFSHIRKTAEI--------- >UniRef50_Q6CS86(146-187:368) KLLA0D03036p n=2 Tax=Saccharomycetaceae RepID=Q6CS86_KLULA E=4e-10 s/c=1.56 id=60% cov=83% ----------EVFPYERAILDHNSSLRGSKPTNFQYLIKEAELKLVHSFKSA >UniRef50_A2QCD4(172-222:447) Contig An02c0090, complete genome n=6 Tax=Eurotiomycetidae RepID=A2QCD4_ASPNC E=9e-14 s/c=1.53 id=42% cov=96% --KVIDPRLQEIYNGERKMGDRNSVLRGIKPTDFSHVRKTAEsmLGRNRSRPG- >UniRef50_C5DFI4(139-186:369) KLTH0D15356p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DFI4_LACTC E=2e-12 s/c=1.54 id=65% cov=94% -SVAEDPVLQEALAHEKVLLDHNSSLRGAKPTNFGYLIKEAELKLVHSL--- >UniRef50_B6H6K5(172-222:443) Pc15g00590 protein n=2 Tax=mitosporic Trichocomaceae RepID=B6H6K5_PENCW E=2e-12 s/c=1.44 id=40% cov=90% -----DPRLQEIYNGERKTGDRNTVLRGIKPTDFSHVRKSAElfLDRNRSRPG- >UniRef50_Q6CHW0(131-176:353) YALI0A04345p n=1 Tax=Yarrowia lipolytica RepID=Q6CHW0_YARLI E=9e-12 s/c=1.55 id=35% cov=88% ---VDDPRLERILASEVAPYDHNSMLRGTKPTDFSSVQKDCYTNILKH---- >UniRef50_B2WMF4(172-220:421) RNA polymerase II accessory factor n=2 Tax=Pleosporineae RepID=B2WMF4_PYRTR E=9e-06 s/c=1.05 id=35% cov=65% --KMVDARLLQIYDGERKMGDHNSVLRGTKNVDFS----------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 0 * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 678 1415 * * * 2 0 * * * * * * 1629 0 0 E 3 * * * 2529 * * * * 664 * * * * * * * * 2354 * * 3 0 * * * * * * 1995 0 0 V 4 2668 * * * * * * * * 2669 2668 * * * * * * 921 * * 4 0 * * * * * * 2056 0 0 S 5 * * 1347 2901 * * * 2317 * * * * * * * 2867 * 2886 * * 5 0 * * * * * * 2131 0 0 D 6 * * 0 * * * * * * * * * * * * * * * * * 6 0 * * * * * * 2076 0 0 P 7 3024 * * * * * * * * * * * 189 * * * * * * * 7 0 * * * * * * 2076 0 0 V 8 * * * * * * * * * 2968 * * * 2252 1292 * * 1978 * * 8 0 * * * * * * 2076 0 0 V 9 * * * * * * * * * 199 * * * * * * * 2954 * * 9 0 * * * * * * 2076 0 0 V 10 * * * 2016 * * * * 2968 3024 * * * 1423 * * * 2954 * * 10 0 * * * * * * 2076 0 0 E 11 * * * 599 * * * * * * * * * 3463 2004 * * * * * 11 0 * * * * * * 2198 0 0 T 12 3371 * * * * * * 512 * * * * * * * * 3252 3367 * * 12 0 * * * * * * 2198 0 0 X 13 3066 * * * 2876 * * * * 2012 * * * * * 2761 * * * 1519 13 0 * * * * * * 2179 0 0 K 14 2153 * 3463 * * * * * 2145 * * 2030 3367 * * 3100 * * * * 14 0 * * * * * * 2198 0 0 H 15 * * * * 3045 1576 2310 * * * * 3100 * * * 2964 * * * 3367 15 0 * * * * * * 2198 0 0 E 16 * * * 0 * * * * * * * * * * * * * * * * 16 0 * * * * * * 2198 0 0 R 17 * * * * * * * * 3371 * * * * * 367 * * 2964 * * 17 0 * * * * * * 2198 0 0 I 18 2151 * * 3045 * * * 3252 1576 * * * * * * * * 2229 * * 18 0 * * * * * * 2198 0 0 L 19 * * * * * * * 3367 * 1291 2607 * 2964 * * 3045 3624 * * * 19 0 * * * * * * 2198 0 0 V 20 * * * * * 1576 * 3100 * 2369 * * * * * * * 2145 * 2964 20 0 * * * * * * 2198 0 0 D 21 * * 0 * * * * * * * * * * * * * * * * * 21 0 * * * * * * 2198 0 0 H 22 * * * * * * 405 * * * * * * * 2030 * * * * * 22 0 * * * * * * 2198 0 0 N 23 * * * * * * * * * * * 0 * * * * * * * * 23 0 * * * * * * 2198 0 0 S 24 3045 * * * * * * * 3100 * * * * * * 759 2545 * * * 24 0 * * * * * * 2198 0 0 A 25 2145 * * * * * * * * * 2964 * * * * 2369 * 1145 * * 25 0 * * * * * * 2198 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 2198 0 0 R 27 * * * * * * * * * * * * * * 0 * * * * * 27 0 * * * * * * 2198 0 0 G 28 * * * * * 0 * * * * * * * * * * * * * * 28 0 * * * * * * 2198 0 0 A 29 2310 * * * * * * 2030 * 3100 * * * * * 3367 1557 * * * 29 0 * * * * * * 2198 0 0 K 30 * * * * * * * * 0 * * * * * * * * * * * 30 0 * * * * * * 2198 0 0 P 31 * * * * * * * * * * * 2239 343 * * * * * * * 31 0 * * * * * * 2198 0 0 I 32 * * * * * * * 2145 3100 * * * * * * * 820 3463 * * 32 0 * * * * * * 2198 0 0 N 33 * * 512 * * * * * * * * 1744 * * * * * * * * 33 0 * * * * * * 2198 0 0 F 34 * * * * 0 * * * * * * * * * * * * * * * 34 0 * * * * * * 2198 0 0 G 35 * * * * * 1631 * * * * * * * 3367 * 785 * * * * 35 0 * * * * * * 2198 0 0 Y 36 * * * * * * 1869 * * * * * * * * 1908 * * * 1121 36 0 * * * * * * 2213 0 0 L 37 * * * * * * * 3336 * 1121 * * * * * * * 1181 * * 37 0 * * * * * * 2213 0 0 I 38 3032 * * * * * * 1654 * * * * * 2794 1869 * * 2814 * * 38 0 * * * * * * 2213 0 0 K 39 * * * * * * * * 221 * * * * * * 2814 * * * * 39 0 * * * * * * 2213 0 0 D 40 * * 985 2177 * * * * * * * * * * * 3468 2447 * * * 40 0 * * * * * * 2213 0 0 A 41 447 1908 * * * * * * * * * * * * * * * * * * 41 221 2814 * 2322 322 * * 2213 1000 0 E 42 * * * 225 * * * * * * * * * * * * * * * 2794 42 277 2517 * 1000 1000 * * 2213 1062 0 L 43 * * * * * * * 3336 * 402 * * * * * * 2794 * * * 43 0 * * * * * * 2213 0 0 K 44 * * 3107 * * 3174 * * 1058 * * 2690 * * 2858 * * * * * 44 0 * * * * * * 2320 0 0 L 45 * * * * * * * 1771 * 1585 * * * * 1420 * * * * * 45 0 * * * * * * 2320 0 0 V 46 * * * * * * * * * 1771 * 2140 * * * * 2767 1585 * * 46 0 * * * * * * 2320 0 0 Q 47 * * * * * * 2133 * 1185 * * * * 3249 2140 * * * * * 47 0 * * * * * * 2320 0 0 S 48 * * * 2858 * * 1728 * * * * * * * * 836 * * * * 48 0 * * * * * * 2320 0 0 I 49 * * * * 2862 * * 3060 2506 2928 2500 * * * 1952 * * * * * 49 0 * * * * * * 2231 0 0 K 50 * * * * * * * * 1581 * * * 587 * * * * * * * 50 0 * * * * * * 2186 0 0 G 51 2357 * * * * 685 * * * * * * * * * 2451 * * * * 51 0 * * * * * * 2186 0 0 S 52 1534 * * * * * * * * * * * * * * 1778 1462 * * * 52 0 * * 0 * * * 1630 0 0 //