HHsearch 1.5 NAME c7ceiB_ FAM FILE c7ceiB_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c7ceiB_.a3m DATE Wed Mar 10 15:50:18 2010 LENG 127 match states, 127 columns in multiple alignment FILT 29 out of 33 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4001 -0.2299 SEQ >ss_dssp CCCCCBCBCCCBCCCTTSSSSCSSSSCBCCBHHHHHHHTTCBCSSHHHHHHHHHHHHTTCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEES SCSSSSCCSSBTTSEEEECHHHHHHTC >sa_dssp ECEECDADCEBDECEDDBBEECEEEECBCBACCAAEDACEDEBECBDCACDCAACCABDCEDABECCDEECCECAEEBECADBEEECCCEEDCCBCBCBE DCDEEECDBBCADABBABCADCCDECE >ss_pred CCCCCEEEECCEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECC CHHHCCCEEECCCCCEECCHHHCCCCC >ss_conf 9888002202425256514643223588431899998528613697999999999952298999842575699985388987770333188721895022 301028803023750431833501259 >Consensus RxxpGxvtGxGxxvxxxWlxxaxxxxGapiPxqIadkLrGrxFxsFdxFrxafWxaVaxDpxlxxQFxxxNxxrmkxGxaPxapxxexxGgrxxfElHHv xxIxxGGxVYDiDNLrIxTPkxHieiH >c7ceiB_ RNKPGKATGKGKPVNNKWLNNAGKDLGSPVPDRIANKLRDKEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHE KPISQNGGVYDMDNISVVTPKRHIDIH >UniRef50_Q4ZZN9(523-649:656) HNH endonuclease:S-type Pyocin n=6 Tax=Proteobacteria RepID=Q4ZZN9_PSEU2 E=7e-28 s/c=0.98 id=45% cov=101% RSIPGVASGYGEAVNGVWLGDKTRAEGASIPAHIADQLRGRRFGNFDSLRKATWIAVANDPELVKQFTQHNLEIMRDGGAPYPRLVDQAGGRTKFEIHHK KHIANGGAVYDIDNLVIMTPRQHIDHH >UniRef50_B0KQD0(506-621:862) S-type Pyocin domain protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KQD0_PSEPG E=2e-08 s/c=0.52 id=27% cov=92% ----GVVSGNGQVAGADWWPANGAAAGVAMPVQVGNQLRGRLFTGMPAFESAVWRAIAAEQGLLGQFDEVNQRRIIRGFPPVAPRASWSGARHEFELRHV GAVDVGSGLYNLDQLRIHTP------- >UniRef50_Q88NA6(626-753:758) Pyocin S-type Killer domain protein n=1 Tax=Pseudomonas putida KT2440 RepID=Q88NA6_PSEPK E=2e-48 s/c=1.51 id=46% cov=101% RYEAGTSTGHGAQVSDTWRKEAASLEGAPIPAQIAELLKSREFRNFDAFRRQFWKAVANDPELSKQFDEMSLSRMrKNGYSPIVDFPDSHLSQKTFILHH VIPISEGGGVYDMDNIRIVTPLSHNSIH >UniRef50_A1A7F5(456-590:593) Uropathogenic specific protein n=18 Tax=Enterobacteriaceae RepID=A1A7F5_ECOK1 E=3e-46 s/c=1.37 id=43% cov=101% RKLPGVVTGRGVPLSpgTRWLDMSVSnnGNGAPIPAHIADKLRGREFKTFDEFREALWLEVSQDPELIAQFSSGNQTRIKQGLTAKAPIDGWYYGPkeiv KKFQIHHRVAVEYGGSVYDIDNLRIVTPRLHDEIH >UniRef50_C4SH19(398-523:530) Putative uncharacterized protein n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SH19_YERMO E=1e-43 s/c=1.40 id=42% cov=100% RYESGTVSGQGKTVSGLWFAGAARGLGAAIPTAIADQLRGRRFSTFDKFSEAFWAVVGHDPELSRQFKRHNISLMKKRFSPFTPASEKINGRDKFECHHV NTMKEGGAVYDMDNLRIATPKRYIKI- >UniRef50_C3CUE4(278-405:417) Colicin-E9 n=3 Tax=Bacillus cereus group RepID=C3CUE4_BACTU E=1e-25 s/c=0.91 id=40% cov=96% RNTPGAVTSSfnlerslGTQKKLMYNDGA---IGV-IPQEVREKLIGREFSSFDEFRKEFWKTVA-ESSYAEEFNRMNKMRMMEGKAPYTPESQQYGEHK VYVLHHKQPIHQGGDVYNLDNLIIVSPKTHQTI- >UniRef50_B0KGN4(5-98:106) S-type pyocin n=1 Tax=Pseudomonas putida GB-1 RepID=B0KGN4_PSEPG E=1e-17 s/c=0.96 id=30% cov=74% ------------------------------PEFIIQKLAGRTFHSFDHFSQSFWLAIAEDPIYSQQFIPAQLNRLKKGWPPRAPFHETAKGLRSYQLCHL NPPEWGGLMYDAENLRIMSAMQY---- >UniRef50_C4S7A1(1-42:50) Klebicin D activity protein (Fragment) n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4S7A1_YERBE E=2e-06 s/c=1.28 id=30% cov=34% ----------------------------------------------------------------GQFNIVNKVEMINYRAPYPPAIEKVGGRKKYEIHHI KFIKMG--------------------- >UniRef50_A2I2S7(1-46:46) Bacteriocin (Fragment) n=9 Tax=Gammaproteobacteria RepID=A2I2S7_SALTI E=1e-11 s/c=1.54 id=36% cov=37% ---------------------------------------------------------------------------KRGRAPYSLIRQQVGGRWTYEIPHV GKIQYGGMVFDVDNLMINTPK------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * * * * * * * 0 * * * * * 1 0 * * * * * * 2842 0 0 N 2 * * 2082 3386 * * * * 3256 4469 * 2101 * 4369 * 4130 * * * 2476 2 0 * * * * * * 2842 0 0 K 3 * * 2795 2007 * * * 4130 3492 2721 3498 * * * * * 2491 4537 * * 3 0 * * * * * * 2842 0 0 P 4 3886 * * * * * * * * * * * 217 * * 3794 * * * * 4 0 * * * * * * 2842 0 0 G 5 * * * * * 0 * * * * * * * * * * * * * * 5 0 * * * * * * 3025 0 0 K 6 3046 * * * * * * 4521 2378 * * * * * * * 2211 1228 * * 6 0 * * * * * * 3025 0 0 A 7 1501 * * * * * * * * * * * * * * 3992 * 777 * * 7 0 * * * * * * 3025 0 0 T 8 * * * * * * * * * * * * * * * 1264 777 * * * 8 0 * * * * * * 3025 0 0 G 9 * * * * * 123 * * * * * * * * * 3610 * * * * 9 0 * * * * * * 3025 0 0 K 10 * * * * * * 3219 3573 2079 * * 2786 * 3938 3369 3610 4563 3502 * 4256 10 123 3610 * 2807 222 * * 3025 1000 0 G 11 * * * * * 0 * * * * * * * * * * * * * * 11 0 * * * * * * 3025 0 0 K 12 3992 * * 2844 * * * * 2459 * * * * 1333 * * 3009 3398 * * 12 0 * * * * * * 3025 0 0 P 13 3395 * 3595 * * * * * * * * 3580 1691 2488 4427 * 3200 3391 * * 13 0 * * * * * * 3025 0 0 V 14 3391 * * * * * * 4427 3610 3398 * * * * * * * 553 * * 14 0 * * * * * * 3025 0 0 N 15 * * * 4563 * 1986 * * 3610 * * 3431 * * * 1203 3378 * * * 15 74 4313 * 1000 1000 * * 3025 1000 0 N 16 3391 * 2535 * * 1097 * * * 3610 * 3510 * * * 4488 4313 * * * 16 66 4488 * 1000 1000 * * 3025 1000 0 K 17 * * 3391 * * 3842 * 2916 3637 3938 3610 2168 * * 3398 4563 3992 4256 * * 17 0 * * * * * * 3025 0 0 W 18 * * * * * * * * * * * * * * * * * * 123 3610 18 0 * * * * * * 3025 0 0 L 19 * * * * 3938 * * * * 628 4400 3610 * * 3992 * * * 3391 * 19 0 * * * * * * 3025 0 0 N 20 2034 * 2205 * * 1885 * * 3992 * * 3706 3391 * * 4899 * * * * 20 0 * * * * * * 3025 0 0 N 21 2474 * 3437 3992 * 1421 * * 3842 * 3398 4630 * * * 4548 4521 * * * 21 0 * * * * * * 3025 0 0 A 22 401 * * * * * * * 4256 * * 3391 * * * 3398 * * * * 22 123 * 3610 * * * * 3025 0 0 G 23 2422 * * * * 1281 * * * * * * * * * 2036 4174 3282 * * 23 0 * * * * * 0 2907 0 1000 K 24 3250 * * 4410 * * * * 2845 * * * * 1896 3002 2532 2812 * * * 24 157 3282 * 1000 1000 * 0 2907 1159 1000 D 25 2639 * 2845 3729 * 978 * * * 3835 * * * 4406 * * * * * * 25 0 * * * * 0 * 2907 0 1000 L 26 3391 * 3365 2043 * * * 3031 * 2200 4427 3398 * 4521 * 4644 * * * * 26 0 * * * * * * 3025 0 0 G 27 * * * * * 0 * * * * * * * * * * * * * * 27 0 * * * * * * 3025 0 0 S 28 796 * * * * * * * * * * * * * * 3183 * 1672 * * 28 123 * 3610 * * * * 3025 0 0 P 29 2519 * * * * * * * * * * * 377 * * 4174 * * * * 29 0 * * * * 0 * 2907 0 1000 V 30 * * * * * * * 573 * * 3421 * * * * * * 2094 * * 30 0 * * * * * * 3055 0 0 P 31 * * * * * * * * * * * * 0 * * * * * * * 31 0 * * * * * * 3163 0 0 D 32 2160 * 3751 3853 * * * * 4657 * * * * 3938 * 2080 2315 3468 * * 32 0 * * * * * * 3163 0 0 R 33 4178 * * 3253 3853 * 2903 * * * * * * 1030 2765 * * * * * 33 0 * * * * * * 3163 0 0 I 34 * * * * * * * 244 * * * * * * * * * 2684 * * 34 0 * * * * * * 3163 0 0 A 35 443 * * * * 3468 * 3853 * * * * * * 3253 * * * * * 35 0 * * * * * * 3163 0 0 N 36 * * 621 3082 * * * * * * * 2620 * 3853 * * * * * * 36 0 * * * * * * 3163 0 0 K 37 * * * * * * * * 837 4243 * * * 1669 3779 * * * * * 37 0 * * * * * * 3163 0 0 L 38 * * * * * * * * * 46 4983 * * * * * * * * * 38 0 * * * * * * 3188 0 0 R 39 3541 * * * * * * 4187 4440 * * * * * 387 * * 4362 * * 39 0 * * * * * * 3188 0 0 D 40 * * 3265 * * 235 * * * * * * * * * 4440 * * * * 40 0 * * * * * * 3188 0 0 K 41 * * * * * * * * 1817 * * * * 4983 547 * * * * * 41 0 * * * * * * 3188 0 0 E 42 * * * 990 * * * * 3189 3490 * * * * 3408 * 2608 * 4658 * 42 0 * * * * * * 3188 0 0 F 43 * * * * 0 * * * * * * * * * * * * * * * 43 0 * * * * * * 3188 0 0 K 44 4154 * * * * 3616 3541 * 1877 * * 4362 * * 3136 1984 3490 * * * 44 0 * * * * * * 3188 0 0 S 45 * * 4983 * * 3490 4658 * * * * 2340 * * * 979 2891 * * * 45 0 * * * * * * 3188 0 0 F 46 * * * * 271 * * * * * 3490 * * * * * * * 3599 * 46 0 * * * * * * 3188 0 0 D 47 * * 564 * * 4658 * * * * * * 3490 * 2360 * * * * * 47 0 * * * * * * 3188 0 0 D 48 1886 * 2051 2894 * * 3089 * 3504 * * * * * 4658 3206 * * * * 48 0 * * * * * * 3188 0 0 F 49 * * * * 120 * * * * 4702 * * * * * 4588 * * * * 49 0 * * * * * * 3209 0 0 R 50 * * * 3555 * * * * * * * * * * 369 2832 * * * * 50 0 * * * * * * 3209 0 0 K 51 4681 * * 1859 * * * * 1465 * * * * 3538 3055 3099 * * * * 51 0 * * * * * * 3209 0 0 K 52 761 * * 3307 * 4982 * * 4926 * * * * 3003 * 3066 * * * * 52 0 * * * * * * 3209 0 0 F 53 * * * * 429 * * * * 3227 * * * * * * 4790 3129 * * 53 0 * * * * * * 3253 0 0 W 54 * * * * * * * * * * * * * * * * * * 0 * 54 0 * * * * * * 3253 0 0 E 55 4274 * * 3401 * * * 3817 1833 2338 3728 * * 3591 2778 * * * * * 55 0 * * * * * * 3253 0 0 E 56 984 4432 * 1517 * * * * * * * * * * * * 4408 4274 * * 56 0 * * * * * * 3253 0 0 V 57 * * * * * * * 2618 * * * * * * * * * 257 * * 57 0 * * * * * * 3253 0 0 S 58 803 * * * * 2462 * * * * * * 4910 * * 2237 * * * * 58 70 * 4408 * * * * 3253 0 0 K 59 2669 * 3107 3544 * * 4230 * 2017 * * 1745 * 4564 * * * * * * 59 85 * 4132 * * 0 * 3219 0 1000 D 60 * * 263 2585 * * * * * * * * * * * * * * * * 60 0 * * * * 0 * 3213 0 1000 P 61 * * * * * * * * * 4648 * * 723 3113 * 2282 4910 * * * 61 0 * * * * * * 3253 0 0 E 62 2959 * 3984 1082 * 3630 * 3605 * * * * * * * 2859 * 4835 * * 62 0 * * * * * * 3253 0 0 L 63 4493 * * * * * * * * 358 * * * * * * * * * 2510 63 0 * * * * * * 3253 0 0 S 64 2689 * * * 4843 5199 * 3757 * 2386 * * * * * 1389 * 2880 * * 64 0 * * * * * * 3253 0 0 K 65 3662 * * 2640 * 2383 * * 1391 * * * * 3608 4353 4145 * * * * 65 0 * * * * * * 3397 0 0 Q 66 * * * 3449 * * * * * * * 3641 * 272 * * * * * * 66 0 * * * * * * 3397 0 0 F 67 * * * * 121 * * * * 3641 * * * * * * * * * * 67 0 * * * * * * 3397 0 0 S 68 * * 3162 * * * * 2476 2264 * * 2339 * * 4500 2426 3786 * * * 68 0 * * * * * * 3397 0 0 R 69 * * * 2685 * 4570 * 4244 3472 * * 3090 2156 3926 2968 3521 4760 * * * 69 0 * * * * * * 3397 0 0 N 70 2991 * * * 4760 2849 3565 * * 5514 3623 4052 * 3594 4500 2155 * 3333 * * 70 0 * * * * * * 3397 0 0 N 71 * * 4677 * * * * * * * * 417 * 3758 * 2856 * * * * 71 0 * * * * * * 3525 0 0 N 72 4880 * * * * * * 2635 2354 2549 5066 3832 * 2421 3283 * * 4349 * * 72 0 * * * * * * 3525 0 0 D 73 3688 * 5099 3490 3797 5064 * * * * 4417 2741 * * 3716 2595 2605 4237 * 4414 73 0 * * * * * * 3525 0 0 R 74 * * 4720 4151 4414 * * 5023 * 2732 * 3540 * 4677 1046 4839 * 4907 * * 74 0 * * * * * * 3525 0 0 M 75 * * * * * * * 2069 * 3841 862 * * * * * * 2819 * * 75 52 4834 * 0 * * * 3700 1000 0 K 76 * * * * * * * 3358 790 4746 4650 * * * 3524 2936 5088 * * * 76 0 * * * * * * 3707 0 0 V 77 4654 * 3939 3697 * 4651 4988 * 1952 * * 2629 * 3168 3052 4742 * 4123 * * 77 0 * * * * * * 3707 0 0 G 78 * * * * * 105 * * * * * * * * 4465 * * * * 5321 78 0 * * * * * * 3707 0 0 K 79 * * * * 3086 4053 * * 2269 2352 * 4746 * * 2497 * 4651 * 3844 3398 79 0 * * * * * * 3707 0 0 A 80 950 * * * * * * * * * * * 2815 * * 1743 4590 * * * 80 0 * * * * * * 3707 0 0 P 81 4590 * * * * * * * * * * * 165 * * 3905 * * * * 81 0 * * * * * * 3707 0 0 K 82 * * * * 2197 * 5225 3816 2574 * * * * * 2956 * 3795 3786 * 2042 82 0 * * * * * * 3707 0 0 T 83 1115 * * * * * * * * * * * 3694 * * 4394 2830 1874 * * 83 0 * * * * * * 3636 0 0 R 84 * * 3777 * * * * 4664 5122 4394 * * 1051 * 1916 * * 3972 * * 84 0 * * * * * * 3636 0 0 T 85 3847 * * 2256 2453 * * 3493 2621 4247 * * 3731 * 2939 * 5118 * * * 85 0 * * * * * * 3636 0 0 Q 86 3204 * 4599 3846 * * 3675 3093 * 3897 * 5187 4896 4170 4394 1774 * 4022 * * 86 0 * * * * * * 3636 0 0 D 87 * * 2039 1013 * 3737 * * * * * * * 3126 * 3806 * * * * 87 0 * * * * * * 3636 0 0 V 88 * * * * * * 3779 * 3360 * * * * 1865 2816 3298 3190 5118 2841 4891 88 0 * * * * * * 3636 0 0 S 89 2371 * * * * 5122 4896 4477 * 3896 * * * * * 3318 * 1394 * 2722 89 0 * * * * * * 3636 0 0 G 90 * * * * * 380 * * 3675 4896 * 4477 * * * * * * * 3737 90 0 * * * * * * 3636 0 0 K 91 3806 * 5223 3862 * 969 * * 2122 * * * * * * 3437 * * * * 91 0 * * * * * * 3636 0 0 R 92 * * * * * * 4661 * 3878 3117 * * 3737 3280 739 * * * * * 92 112 3737 * 2000 415 * * 3636 1159 0 T 93 * * 3780 3941 * 3714 3333 3955 2076 * * * * 4526 3190 * 3152 3797 4394 * 93 54 * 4765 * * * * 3636 0 0 S 94 * * * 3894 * * * * 1473 * * * 5075 4591 3673 2075 3190 3718 * * 94 0 * * * * 0 * 3636 0 1000 F 95 * * * * 834 * * 3734 * 4959 * * * * * * 5172 * * 1717 95 0 * * * * * * 3636 0 0 E 96 * * 4959 505 * * * 3825 * * * * * 2706 * * * 4661 * * 96 0 * * * * * * 3636 0 0 L 97 * 4477 * * * * * 1311 * 857 * * * * * * * * * * 97 0 * * * * * * 3636 0 0 H 98 * 3675 * * * * 317 * * * * * 4394 * 3806 * * * * * 98 0 * * * * * * 3636 0 0 H 99 * * * * * * 0 * * * * * * * * * * * * * 99 0 * * * * * * 3636 0 0 E 100 * * 5187 3875 * * * 3464 2867 3675 * * * * 4599 4940 * 931 * * 100 0 * * * * * * 3636 0 0 K 101 * * 3383 5223 * 3070 * 3775 2021 * * 2727 * 3708 * * * 2242 * * 101 0 * * * * * * 3636 0 0 P 102 2771 * * 3715 4230 * 4278 * 4394 4081 * * 1506 4526 3943 5164 4477 * * 4940 102 0 * * * * * * 3636 0 0 I 103 * * * * * * * 758 * 4802 4477 * 3675 * * * * 2002 * * 103 0 * * * * * * 3636 0 0 S 104 2678 * 3806 2145 * * 3662 * 2316 * * * * 4394 * 2399 5096 * * * 104 0 * * * * * * 3636 0 0 Q 105 * * 2600 3176 * * 4891 * * * 5346 3063 4664 2887 3845 3972 * 3806 3675 3493 105 0 * * * * * * 3636 0 0 N 106 4664 * * * * 329 * * * * * 2969 * * 4765 * * * * * 106 0 * * * * * * 3636 0 0 G 107 * * * * * 108 * * * * * * * * * 3798 * * * * 107 0 * * * * * * 3604 0 0 G 108 1633 * 3711 2672 * 2257 * * * 3607 4394 4982 * * * 3757 * * * * 108 0 * * * * * * 3604 0 0 V 109 * * * * * * * 4982 * 3214 3607 * * * * * * 361 * * 109 0 * * * * * * 3604 0 0 Y 110 * * * * 4394 * * * * * 3770 * * * * * * * * 186 110 0 * * * * * * 3604 0 0 D 111 * * 546 * * * * * * * * 1666 * * * * * * * * 111 0 * * * * * * 3604 0 0 M 112 3607 * * * 4982 * * 1980 * 2463 2474 * * * * * * 1881 * * 112 0 * * * * * * 3604 0 0 D 113 * * 247 3040 * 4803 * * * * * * * * * * * * * * 113 0 * * * * * * 3604 0 0 N 114 * * * * * * * * * * * 108 * 3798 * * * * * * 114 0 * * * * * * 3604 0 0 I 115 * * * * 4860 * * 2626 * 609 3698 * 4766 * * * * 4882 * * 115 0 * * * * * * 3604 0 0 S 116 * * * * * 5392 5168 3696 3759 * 4394 * * * 733 4314 * 3351 * * 116 0 * * * * * * 3604 0 0 V 117 3732 * * * * * * 692 * * * * * * * * * 1710 * * 117 0 * * * * * * 3604 0 0 V 118 3672 * * * * * 3798 * * 3300 2543 3168 * * * * 3527 1402 * * 118 0 * * * * * * 3604 0 0 T 119 * * * * * * * * * * * * * * * 2650 250 * * * 119 0 * * * * * * 3604 0 0 P 120 3662 * * * * * * * * * * * 119 * * * * * * * 120 0 * * * * * * 3451 0 0 K 121 * * * * * * * * 614 4651 3518 * * * 2187 * * * * * 121 0 * * * * * * 3324 0 0 R 122 * * * * * * 4749 * * 2568 4411 3602 * 2296 1460 4519 4205 * * * 122 0 * * * * * * 3223 0 0 H 123 * * * * * * 230 * * * * * * * * * * * * 2761 123 0 * * * * * * 3223 0 0 I 124 * * 3337 * * 4460 * 753 * * * 4261 * 3768 * 4180 * 3616 * * 124 0 * * * * * * 2965 0 0 D 125 4460 * 2682 861 * * * * 3854 * * * * 4226 * 4261 3768 * * * 125 0 * * * * * * 2965 0 0 I 126 * * * * * * 4493 469 * 4583 * 4582 * * * * 2738 * * * 126 0 * * * * * * 2965 0 0 H 127 * * * * * * 0 * * * * * * * * * * * * * 127 0 * * 0 * * * 2801 0 0 //