HHsearch 1.5 NAME c7ar9A_ FAM FILE c7ar9A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7ar9A_.a3m DATE Sat Dec 11 08:36:04 2021 LENG 121 match states, 121 columns in multiple alignment FILT 109 out of 281 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.3957 -1.9176 SEQ >ss_dssp CCCCCSTTTTTTCCSSHHHHHHHTCCCCTTTTCCSCSHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH HHHHHHHHHHHHHTTSSSCCC >sa_dssp EEDBEDEDDCEEDEDEECDDDBDEBECDEEEEBEECECBDEDEEEEDEDEDDEEEDEEEEEEBEECDDDBEEEDDDCDDECDECEEDEDEEEDDEDCCEC CEECEDDDEECEEECCCEEEE >ss_pred CCCCCCHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHCCCCCCC >ss_conf 9754483676411342132100021000100375330599999999999999999963465569999999999999999999999999743799999999 999999999999835536259 >Consensus xxxxxxxxxxxxxxxxxxxxxxxxrxxxxxxxxxxxxxpxlxxxxxxxxxxxxxxxxPxlxVrFYLIAILFLIFDVEivlLfPwavsxxxxxxxxxxliF lxILxiGLiYEWxkGaLdWxe >c7ar9A_ LYNAMTPAQRYFVEGEHVVQAEANRDILFTQLDSNSYLPVLHYVLVGTALGVVFLVLPLLIVSFYIVSIMYLLFDIEVVYLIPYVMTNATEYMYWVMQTF VAILVGGFFYEWRMGALEWRE >UniRef50_Q2C5T2(60-118:124) NADH-quinone oxidoreductase subunit n=2 Tax=Photobacterium RepID=Q2C5T2_9GAMM E=0.0004 s/c=0.77 id=26% cov=48% -------------------------------------------------------------ISYYLIAVAFLIFELEAAILFAWGVDYWQLgiPGVIAGV TFLVILLLGFIYMIRKGVFQ--- >UniRef50_A0LEP8(61-123:127) NADH-quinone oxidoreductase subunit n=3 Tax=Deltaproteobacteria RepID=A0LEP8_SYNFM E=2e-08 s/c=0.96 id=32% cov=50% -------------------------------------------------------------VAYYIYALIFLAFDVDVLYLFPVALVYGKYGLrdLIEVM IFIGILSLAIVYAWRKGVFEWK- >UniRef50_B6RQY5(42-113:115) NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Abispa ephippium RepID=B6RQY5_9HYME E=2e-07 s/c=0.78 id=27% cov=52% ---------------------------------------------------------PPMPINFIITGMIFLIFDVEIIILTPiIATLKMSIIWYISSLI MIITLLLGLIYEWNEQNLKW-- >UniRef50_Q34182(59-126:134) NADH-ubiquinone oxidoreductase chain 3 (Fragment) n=1 Tax=Cepaea nemoralis RepID=Q34182_CEPNE E=2e-06 s/c=0.78 id=34% cov=49% -------------------------------------------------------------VRFFYISYLFHVFDVESVLLFPYmgmMFLSFSSPSLWGL YFFSLILYMGLLYEWYNSLLDW-- >UniRef50_B0SP82(2-130:131) NADH-quinone oxidoreductase subunit n=6 Tax=Leptospira RepID=B0SP82_LEPBP E=5e-12 s/c=0.56 id=34% cov=79% ------------------------RAFSYMGSAPDSFAPILLQLLLGVGFSALILSLAFLLnpkkkskpqdtfecgvtyygdarglfnIKFYLVAVLFIL FDIEAVFLYPWAVNLIGFkeaglgtFFLFEMFFFLLILVVGLYYIWKKGALEW-- >UniRef50_Q06SB5(51-118:118) NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Hiatella arctica RepID=Q06SB5_9BIVA E=1e-06 s/c=0.80 id=28% cov=47% ---------------------------------------------------------------FFLLAILFLAFDMELILLlfYIWGKGEVSWQVVNKCI FFVGILLIGLWHEINEGSLSW-- >UniRef50_Q5W904(81-145:165) NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Lingula anatina RepID=Q5W904_LINUN E=4e-05 s/c=0.75 id=24% cov=49% -------------------------------------------------------------IRFFLISVLFVIFDVEVILITSLPIMNSAGVWasaSLSV FMFTSFLFFSLLFEALKGALDW-- >UniRef50_Q68PI8(53-116:118) NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=Aleyrodinae RepID=Q68PI8_9HEMI E=7e-05 s/c=0.75 id=36% cov=50% -----------------------------------------------------------LCIHFYMISIIFLIFDVELMMILPFIFSFKIMTINLVMkif LTFMLIMMIGLLYEWLMGMINW-- >UniRef50_C7FEY0(63-124:143) NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=Saccharomycetales RepID=C7FEY0_DEKBR E=0.0003 s/c=0.75 id=28% cov=47% -------------------------------------------------------------IPFILIALLFLPFDLEISSMLPYIISSYSIGLYGLILfi IFLSILVIGFTFELNSKAI---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1000 0 0 Y 2 * * * * * * * * * * * * * * * * * * * 0 2 0 * * * * * * 1282 0 0 N 3 * * * * * * * * * * * 0 * * * * * * * * 3 0 * * * * * * 1282 0 0 A 4 0 * * * * * * * * * * * * * * * * * * * 4 0 * * * * * * 1282 0 0 M 5 * * * * * * * * * * 1000 * * * * * * * 1000 * 5 0 * * * * * * 1282 0 0 T 6 * * * * * * * * * * * * * * * 1000 1000 * * * 6 0 * * * * * * 1282 0 0 P 7 * * * * * * * * * * * * 0 * * * * * * * 7 0 * * * * * * 1282 0 0 A 8 0 * * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 1282 0 0 Q 9 * * * * * * * * * * * * * 0 * * * * * * 9 0 * * * * * * 1282 0 0 R 10 * * * * * * * * * * * * * * 0 * * * * * 10 0 * * * * * * 1282 0 0 Y 11 * * * * * * * * * * * * * * * * * * * 0 11 0 * * * * * * 1282 0 0 F 12 * * * * 0 * * * * * * * * * * * * * * * 12 0 * * * * * * 1282 0 0 V 13 * * * * * * * * * * * * * * * * * 0 * * 13 0 * * * * * * 1282 0 0 E 14 * * * 0 * * * * * * * * * * * * * * * * 14 0 * * * * * * 1282 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1282 0 0 E 16 * * 1000 1000 * * * * * * * * * * * * * * * * 16 0 * * * * * * 1282 0 0 H 17 * * * * * * 0 * * * * * * * * * * * * * 17 0 * * * * * * 1282 0 0 V 18 * * * * * * * * * * * * * * * * * 0 * * 18 0 * * * * * * 1282 0 0 V 19 * * * * * * * * * * * * * * * * * 0 * * 19 0 * * * * * * 1282 0 0 Q 20 * * * * * * * * * * * * * 1000 * * 1000 * * * 20 0 * * * * * * 1282 0 0 A 21 0 * * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1282 0 0 E 22 * * * 0 * * * * * * * * * * * * * * * * 22 0 * * * * * * 1282 0 0 A 23 0 * * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1282 0 0 N 24 * * * * * * * * * * * 1000 * * * 1000 * * * * 24 0 * * * * * * 1282 0 0 R 25 * * * * * * * * * * * * * * 0 * * * * * 25 0 * * * * * * 1793 0 0 D 26 1413 * 1679 * * * * * * * * * * * * * 1679 * * * 26 0 * * * * * * 1793 0 0 I 27 * * * * 540 * * 1679 * * * * * * * * * * * * 27 0 * * * * * * 1793 0 0 L 28 * * * * * * * * * 1679 * * * 1679 * 1413 * * * * 28 0 * * * * * * 1793 0 0 F 29 * * * * 679 * * * * * * * * * * * * * * 1413 29 0 * * * * * * 1793 0 0 T 30 * * * * * * * * * * 1413 * * * * * 679 * * * 30 0 * * * * * * 1793 0 0 Q 31 * * * * * 540 * * * * * * * 1679 * * * * * * 31 0 * * * * * * 1793 0 0 L 32 * * * * * * * * * 1070 * * * * * 1877 * 1991 * * 32 0 * * * * * * 2051 0 0 D 33 1877 * 459 * * * * * * * * * * * * * * * * * 33 0 * * * * * * 2051 0 0 S 34 * * * * * * * * * 1991 * * 1877 * * 1070 * * * * 34 0 * * * * * * 2051 0 0 N 35 * * 1877 * * 2061 * * * * * 2079 * * * 1991 * * * * 35 0 * * * * * * 2051 0 0 S 36 * * * * * * * * * * * * * 1991 * 418 * * * * 36 0 * * * * * * 2051 0 0 Y 37 * * * * 1214 * * * * * * * * * * * * * * 814 37 0 * * * * * * 2068 0 0 L 38 2150 * * * * * * * * 814 * * * * * * * * * 2281 38 0 * * * * * * 2068 0 0 P 39 * * * * * * * * * * * * 0 * * * * * * * 39 0 * * * * * * 2068 0 0 V 40 * * * * * * * 783 * * * * * * * * * 2230 * 2281 40 0 * * * * * * 2068 0 0 L 41 * * * * * * * * * 332 * * * * * * * 2281 * * 41 0 * * * * * * 2068 0 0 H 42 * * * * * * 2230 1387 * 2150 2481 * * * * * * * * * 42 0 * * * * * * 2068 0 0 Y 43 2281 * * * 1491 * * * * * * * * 2150 * * * * * 2230 43 0 * * * * * * 2068 0 0 V 44 * * * * * * * * * 783 * * * * * * 2281 2230 * * 44 0 * * * * * * 2068 0 0 L 45 * * * * * 1491 * * * 1189 * * * * * * * 2281 * * 45 0 * * * * * * 2068 0 0 V 46 * * * * * * * 833 * 2150 * * * * * * * 2230 * * 46 0 * * * * * * 2068 0 0 G 47 833 * * * * 1189 * * * * * * * * * * * * * * 47 0 * * * * * * 2068 0 0 T 48 * * * * * 2501 * * * 2481 * * * * * * 1255 2150 * * 48 0 * * * * * * 2068 0 0 A 49 1255 * * * 2501 2150 * * * * * * * * * * * 2481 * * 49 0 * * * * * * 2068 0 0 L 50 * * * * 2150 * * 1387 * 1350 * * * * * * * * * * 50 0 * * * * * * 2068 0 0 G 51 * * * * * 2230 * * * * * * * * * 346 * * * * 51 0 * * * * * * 2068 0 0 V 52 2150 * * * 2501 * * * * * * * * * * * 1378 2230 * * 52 0 * * * * * * 2068 0 0 V 53 2481 * * * * * * * * 1315 * * * * * * * 1255 * * 53 0 * * * * * * 2068 0 0 F 54 * * * * 368 * * 2150 * * * * * * * * * * * * 54 0 * * * * * * 2068 0 0 L 55 * * * * * * * 2281 * 1189 * * * * * 2501 * 2481 * * 55 0 * * * * * * 2068 0 0 V 56 * * * * * * * * * * * * * * * 2150 * 368 * * 56 0 * * * * * * 2068 0 0 L 57 1229 * * * * * * * * 802 * * * * * * * * * * 57 0 * * * * * * 1984 0 0 P 58 3349 * * * * * * * * * * * 149 * * * * * * * 58 0 * * * * * * 2841 0 0 L 59 * * * * 3349 * * 3188 * 2392 2192 * 1887 * 3155 * * * * * 59 129 3547 * 4807 52 * * 2841 1000 0 L 60 * * * * 2091 * * * * 911 3007 * * * * * * 3198 * * 60 0 * * * * * * 3120 0 0 I 61 3198 3018 * * * * * 3621 3501 2845 * * 3007 3328 * 2091 * * * * 61 145 3388 * 4877 50 * * 3120 1467 0 V 62 6378 * * * * * * 1264 * * * * * 5906 * * * 850 * * 62 0 * * * * * * 4495 0 0 S 63 4625 * * 5632 * 5115 3603 6017 2359 * * 4091 3880 3207 1738 3588 * * * * 63 17 6403 * 4807 52 * * 4526 1000 0 F 64 * * * * 374 * * * * * * * * * * * * * * 2129 64 0 * * * * * * 4782 0 0 Y 65 * * * * 1251 * 6634 5087 * * * * * * * 5366 * * * 955 65 0 * * * * * * 4789 0 0 I 66 * * * * 5363 * 5408 3081 * 831 3380 * 6844 * 6676 6476 5473 3683 * 4453 66 0 * * * * * * 4789 0 0 V 67 * * * * 5441 * * 1404 * 3197 5011 * * * * * 4163 1580 * 3863 67 0 * * * * * * 4789 0 0 S 68 554 * * * * 3692 * * * 5716 * * * 5820 * 2832 4981 4941 * * 68 0 * * * * * * 4789 0 0 I 69 6892 * * * 5604 * * 1242 * 2229 2756 * * * * * 6563 2646 * 5918 69 0 * * * * * * 4787 0 0 M 70 5231 * * * 4194 * * 2196 * 1070 4350 * * * * 4939 5466 3058 * * 70 0 * * * * * * 4787 0 0 Y 71 * * * * 104 * * * * 5946 * * * * * * * * * 4228 71 0 * * * * * * 4787 0 0 L 72 5604 * * * * * 5918 2199 * 924 4894 * * * * * * 2439 * * 72 0 * * * * * * 4787 0 0 L 73 4121 * * * * * * 1076 * 2364 4544 * 5957 * * * * 2217 * * 73 0 * * * * * * 4787 0 0 F 74 * * * * 34 * * * * * * * * * * * * * 5429 * 74 0 * * * * * * 4787 0 0 D 75 5604 * 149 3687 * * * * * * * * * * * * * * * * 75 0 * * * * * * 4787 0 0 I 76 6207 * * * 5718 6563 * 2051 * 2287 4048 * * * * * * 1151 * * 76 0 * * * * * * 4787 0 0 E 77 * * 4184 82 * * * * * * * * * * * * * * * * 77 0 * * * * * * 4787 0 0 V 78 2928 * * * * 5613 * 1409 * 2774 4601 * * * * 4740 3524 2645 * * 78 0 * * * * * * 4787 0 0 V 79 2183 * * * * * * 2780 * 3070 4064 * * * * 3978 4478 1527 * * 79 0 * * * * * * 4787 0 0 Y 80 * * * * 1857 * * 2806 * 1333 5390 * * * * 5957 * 6451 * 2914 80 0 * * * * * * 4787 0 0 L 81 * * * * 4048 * * 2360 * 718 3256 * * * * * 5655 6366 * * 81 21 6118 * 1000 1000 * * 4787 1000 0 I 82 6773 * * * 1526 * * 2935 * 2417 4163 * * * * * 5328 5495 5494 2318 82 9 7284 * 1000 1000 * * 4787 1000 0 P 83 4068 * * * * * * 5441 * 6514 * * 243 * * 4597 6570 6711 * * 83 61 4598 * 1318 740 * * 4787 2183 0 Y 84 6299 4704 * * 3808 * * 3501 * 2750 6469 * * * * 5718 5559 3566 1363 3110 84 68 4737 6827 1282 764 * * 4787 1971 0 V 85 1237 6926 * * 4149 4565 * 3106 6885 5373 4794 * 3318 * * 4090 6002 3193 * * 85 51 4861 * 978 1023 0 * 4784 1824 1000 M 86 3674 * 6893 * 3514 6225 * 2947 6118 3227 3336 * 4691 4870 * 6469 4022 1855 6011 5342 86 54 4760 * 1446 660 * * 4787 2269 0 T 87 3106 5621 4307 6489 5868 4910 * 3317 * 3735 5796 4019 * 5910 * 1696 4893 3071 5771 * 87 71 4373 * 1228 804 * * 4787 2551 0 N 88 4767 * 7709 5300 2163 4823 6882 4217 4793 2890 3713 4148 * 5764 * 3319 6799 5060 5247 3004 88 59 4631 * 1381 699 * * 4789 2428 0 A 89 3859 * 5305 5731 5125 4078 5162 5451 2985 3370 3946 3266 5553 5267 3271 3879 4459 5183 5546 4529 89 37 5294 * 2516 277 * * 4789 2205 0 T 90 3996 * 3546 3389 6735 3704 6487 4605 3914 4577 5253 3777 5595 5856 5993 2220 3607 4568 * 5801 90 115 3700 * 2531 274 * * 4789 2861 0 E 91 * * 6487 4518 4950 3776 * 2977 6642 1994 4016 4940 4095 * * 3297 4584 5163 3147 6083 91 121 3987 5846 2522 276 * * 4789 2037 0 Y 92 4684 * 6329 5212 4562 2119 * 3933 4876 3892 4017 6164 3452 5102 6651 3764 4686 3925 5113 3859 92 192 3007 * 1384 697 0 * 4788 3333 1635 M 93 3410 7300 * * 4989 2283 * 4560 5690 3313 3740 4825 6978 7014 * 2591 4462 4383 3118 * 93 184 3063 * 2635 253 * * 4789 3239 0 Y 94 6729 * * * 2018 * * 3279 6799 1938 4213 6279 6566 * 6708 3835 5727 4029 * 2905 94 59 4634 * 1393 691 * * 4789 2371 0 W 95 3930 * * * 3379 2989 * 2363 * 3076 5188 5290 * 6206 * 5424 3626 3582 2975 5811 95 12 6899 * 1000 1000 * * 4789 1000 0 V 96 3702 5716 6061 2544 7090 3510 * 4136 5126 3737 4958 5464 5309 6770 7298 2752 3658 3928 4279 5533 96 39 5228 * 1816 482 * * 4789 1665 0 M 97 3791 6117 * * 3604 4222 * 2381 * 3374 1997 * * * * 3664 4796 3016 * * 97 119 3656 * 1329 732 * * 4789 3033 0 Q 98 4752 6145 * * 2967 4732 6566 3146 * 1868 2970 6882 * 6821 * 3908 5473 3597 5319 4508 98 58 4669 * 503 1765 * * 4789 1633 0 T 99 5097 6713 5775 * 2772 5125 * 2268 * 2420 3542 * * * * 3726 4016 2735 * * 99 97 4211 6487 1281 765 * * 4789 2597 0 F 100 6429 * * * 199 * * 4327 * 4812 6234 * * * * * * 6705 * 6853 100 0 * * * * * 0 4780 0 1000 V 101 5865 * * * 5011 * * 2334 * 1300 3440 * * * * 4455 4143 2807 * 6608 101 0 * * * * * 0 4780 0 1000 A 102 2766 * * * 3551 3249 * 2757 * 1994 3606 * 6322 * * 5163 4466 3384 * * 102 0 * * * * 0 * 4780 0 1000 I 103 6511 5409 6908 5775 3733 * * 1243 * 3317 5107 * * * * 6658 3950 2075 * * 103 28 5714 * 1585 585 * * 4789 1538 0 L 104 * * * * 4976 * * 5058 * 210 6279 * * * * * * 4043 * * 104 0 * * * * * * 4789 0 0 V 105 3726 * * 6923 3176 4391 * 2754 * 2079 4588 * * * * 3616 3205 3472 5414 5174 105 0 * * * * * * 4789 0 0 G 106 4029 6897 * * 4054 5737 * 2108 * 1702 4264 * * * * 6948 6854 2453 5226 4875 106 12 * 6877 * * * * 4789 0 0 G 107 2960 * * * * 338 * * * * * * 6604 * * 4445 6548 6221 * * 107 0 * * * * 0 * 4790 0 1000 F 108 * * 6708 * 2422 * * 3911 * 927 * * * * * * 5569 3591 4771 3820 108 0 * * * * * * 4789 0 0 F 109 3065 * * * 2964 6810 * 2080 * 2302 6449 * * * * * 5956 2625 6117 3322 109 0 * * * * * * 4789 0 0 Y 110 * * * * 4399 * 3325 5595 * 5021 6418 * * * * * * 5666 4415 468 110 0 * * * * * * 4789 0 0 E 111 2760 * 6151 657 6124 6248 * 4953 * 3991 6605 * * * * * * 3811 * * 111 0 * * * * * * 4785 0 0 W 112 6366 * * * 6852 * * 3387 6331 3143 4921 * * * * * * 4446 685 4134 112 0 * * * * * * 4785 0 0 R 113 4557 6638 * * 4696 4745 * 6518 2039 3958 6482 2857 * 7232 2439 3368 * 4896 4531 4676 113 0 * * * * * * 4785 0 0 M 114 6823 7114 5803 1937 5965 * 6448 6332 1835 6878 4097 4067 * 3799 4131 3873 5170 6416 6609 6461 114 0 * * * * * * 4782 0 0 G 115 * * * * * 198 * * 4513 * * 4796 * 4983 * 5896 * * * * 115 0 * * * * * * 4782 0 0 A 116 1447 * 5202 * * 3589 7148 4693 6474 4097 4979 6231 * * 6718 2564 5373 2645 * * 116 0 * * * * * * 4782 0 0 L 117 * * * * 2917 * * 3548 * 437 5638 * * * * * * 5425 * * 117 0 * * * * * * 4782 0 0 E 118 4209 * 1908 2141 6686 * * 5734 3363 * 6513 3115 * 3950 4712 3755 5396 * * * 118 0 * * * * * * 4756 0 0 W 119 * * * * 6087 * * * * * * * * * * * * * 42 6191 119 0 * * * * * * 4737 0 0 R 120 3898 * 5125 3697 * * * 3636 2045 4864 * 4011 * 3062 2298 * 3559 * * * 120 0 * * * * * * 3989 0 0 E 121 * * 2871 832 * * * * 2391 * * * * 3172 * * * * * * 121 0 * * 0 * * * 3707 0 0 //