HHsearch 1.5 NAME c7a23X_ FAM FILE c7a23X_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7a23X_.a3m DATE Sat Oct 31 08:29:38 2020 LENG 103 match states, 103 columns in multiple alignment FILT 30 out of 34 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.3972 -1.4358 SEQ >ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTTTSCSTTHHHHCCHHHHHTT CCC >sa_dssp EEEEBEDDECAEDCBDDBCECACECBEDBBEDADADEEBDDDDBDEBCCDDCEEDDECEDCEDBBEDCEECDDDBEDBDEEECCDEDACDCEEEDEEEEE DEE >ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC CCC >ss_conf 9876598899999999999999997505999828877669899999999999972157839999999999999999999996331467759899999840 289 >Consensus xpixSxnxxEArxrvlxlYRxxxRxiPxixxxYxLxxxxsxxxxRxxirxxFxxnxxvxDxxviDxLixkgxxElxexxxxwKQrxHvmxyfdFlxkFxx gxx >c7a23X_ VPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIRNNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYDFLKNFYT SNY >UniRef50_A0BPW3(49-168:173) Chromosome undetermined scaffold_12, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0BPW3_PARTE E=5e-22 s/c=0.88 id=30% cov=96% ----SKNIIQAHFKVLRFYRKVCRLIPFLLRIHDMEVTCNSQQAMLNVANVIRKRAYLRDPDAVDRWVYRGYELLYQAEWHMLNRDHLFQYFanqnrsda gysylenqklkgksEFLKDFYIGN- >UniRef50_Q54F42(15-103:124) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 n=1 Tax=Dictyostelium discoideum RepID=NDUA6_DICDI E=1e-16 s/c=0.98 id=33% cov=81% ---------QARRRCFKLYRNCIRSIPHLIQHYNLS--YNMSEMRNRFRSNFVEFEEVTEKNQLDRLAFIGETELFDAMSLLKTRSHVVNYFD------- --- >UniRef50_Q6UKY9(24-99:138) NADH:ubiquinone oxidoreductase B14 subunit n=1 Tax=Chlamydomonas reinhardtii RepID=Q6UKY9_CHLRE E=5e-12 s/c=0.95 id=31% cov=75% --------------ARHFYFEICRCLPFIQRLHKMEEMVSLKELRAIVKEKFKEYKDVKDGRVVDLLIFKGREEIETYLLMHKQRHHVVT---------- --- >UniRef50_O18236(21-130:131) Protein Y57G11C.12b, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=O18236_CAEEL E=9e-09 s/c=0.56 id=27% cov=98% -PIKSNNSAEARMSVLAAYKEFQRLTPKFWWDFGLHD-MPLGVFRAVIKKQFTKNGHLTDVRVVDRLVGETHQHMKSIRYAFYNPDHVRNYLfaenveak pkDFLSKFLNGK- >UniRef50_B7S480(16-92:123) Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S480_PHATR E=2e-08 s/c=0.78 id=26% cov=76% -----------HNRPARLYKCIMREVPRVLMIYDL-MNISRADAKKAIRDHFYHNKDVKDQRVQDMLVEKGYIDLEDTLLQHKQKTHLM----------- --- >UniRef50_C4QJ15(365-476:477) Putative uncharacterized protein (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4QJ15_SCHMA E=3e-28 s/c=1.12 id=33% cov=99% -PILSRNHAEARRRVISLYRAWYRQLPFIPKEYSHSSVdLTVPVLHARLREEFRKNKDIKDLRIIDLLIHRWQNELLEVAHLWKSDTHVMDFFredyrpe kpkDFLDKFLSGK- >UniRef50_D2VT73(42-129:180) NADH-ubiquinone oxidoreductase n=1 Tax=Naegleria gruberi RepID=D2VT73_NAEGR E=4e-18 s/c=1.05 id=26% cov=84% ----SKSLEEANANVLFLYRRMLKILPWMKETY--HVPTNLDVMRKTIHKEFKSFQGLSDTELIDALVIRGYIEYNEATMHHKQRGHIIKFF-------- --- >UniRef50_A3LX41(14-121:121) NADH-ubiquinone oxidoreductase B14 subunit (Complex I-B14) (CI-B14) n=2 Tax=Saccharomycetaceae RepID=A3LX41_PICST E=6e-18 s/c=0.85 id=29% cov=94% ----SATAPELRKRVLHLYRRYMRYSKEFCDIYELDMPV--ANVKTKIRQEFERQRFVNNLDVSNVLLMKGQMEFQELINFWKQQCHVLRYFddqhsynv vdknDFVKNFLRGN- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * * * * * * * * * * * 0 * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 3028 0 0 P 3 * * * * * * * 642 * 3578 * * 2964 * * * * 2765 * * 3 0 * * * * * * 3028 0 0 N 4 * * * * 1674 * * * 2627 1835 * 2964 * * * * * 3105 * * 4 0 * * * * * * 3028 0 0 S 5 * * * * * * * * * * * * * * * 0 * * * * 5 0 * * * * * * 4402 0 0 A 6 1686 * * * * 4281 * * 3009 * * 3899 * 3929 2360 3257 * 3615 * * 6 0 * * * * * * 4447 0 0 N 7 * * 2145 * * * * * * * * 1084 * * * 1965 4444 * * * 7 0 * * * * * * 4540 0 0 L 8 3567 * * * * * 3530 4038 4411 2469 3454 * 3745 * 4730 3226 * * 2881 3405 8 0 * * * * * * 4540 0 0 T 9 2087 * 2770 3341 * 4639 * 4038 * * * 4168 4444 3549 * 4849 2921 3954 * * 9 0 * * * * * * 4540 0 0 E 10 * * 3330 575 * * * * * * * * * 2126 * * * * * * 10 0 * * * * * * 4769 0 0 A 11 279 * * * * * * 4162 * 3616 4710 * * * * * * * * * 11 0 * * * * * * 4769 0 0 R 12 * * * * * * 3434 * 2054 4663 * 4354 * 3636 1175 4190 * * * * 12 0 * * * * * * 4792 0 0 R 13 2773 * * * 4271 * * * 2467 * 3130 4618 * 5041 1447 * 4741 4994 * * 13 0 * * * * * * 4792 0 0 R 14 3207 * * * * * * * 3230 4741 * 4354 * * 718 3461 * * * * 14 0 * * * * * * 4792 0 0 V 15 3395 4310 * * * 3659 * * * * 4180 * 4686 * * 3469 3458 1000 * * 15 0 * * * * * * 4874 0 0 F 16 4686 * * * 3103 * * 3332 * 1033 4180 * * * 2311 * * * * * 16 0 * * * * * * 4874 0 0 D 17 2688 * 4755 4486 4417 3848 3820 * 3617 * * 3570 * 3968 2852 2747 4082 * * * 17 0 * * * * * * 4999 0 0 F 18 3236 * * * 1973 * * * * 719 * * * * * 4982 * * * * 18 0 * * * * * * 4999 0 0 F 19 * * * * 3742 * * * * * * * * * * * * * * 112 19 0 * * * * * * 4999 0 0 R 20 * * * * 4729 * * * 2762 * * * * * 295 * * * * * 20 0 * * * * * * 4999 0 0 A 21 2007 4760 3309 3004 * * * * 3299 * * 4327 * 3935 2832 4298 4299 * * 5066 21 0 * * * * * * 4999 0 0 A 22 4755 3312 * * 2793 * * 3259 * * 4417 * * * * * * 2606 1575 3902 22 0 * * * * * * 4999 0 0 C 23 * 1777 * * 5098 * * 4327 * 2146 3836 * * 4176 * 5123 5066 * * 2189 23 0 * * * * * * 4999 0 0 R 24 * * * * * * * * 2971 * * * * * 197 * * * * * 24 0 * * * * * * 4999 0 0 S 25 4039 4729 * 2650 * 3143 4887 4417 * 2672 * * * 2366 * 2605 * * * 4917 25 0 * * * * * * 4999 0 0 I 26 2865 * * * * * * 1836 * 2272 * * * * * 3343 3608 2359 * * 26 0 * * * * * * 4999 0 0 P 27 * * * * * * * * 4917 * * * 100 * 4887 * * * * * 27 0 * * * * * * 4999 0 0 T 28 * * 4299 3088 2061 4887 4327 * 4176 5098 4298 4486 * * 3905 * 3772 * 2623 5265 28 0 * * * * * * 4999 0 0 I 29 4728 * * * 2658 * * 1452 * 3341 3327 * * * * * 4486 2356 * * 29 0 * * * * * * 4999 0 0 M 30 4807 5008 * * * * * 3262 3396 2286 2961 * 3838 3417 * * * 2460 4180 * 30 0 * * * * * * 4959 0 0 D 31 * * 2336 3767 * * 3419 * 3838 * 3986 4934 * 3345 2323 4207 4019 * 4180 * 31 0 * * * * * * 4959 0 0 I 32 5401 * 3605 3230 * * 4382 2171 * 2127 4120 3209 * * * * 3770 * * 4328 32 0 * * * * * * 4959 0 0 Y 33 * * * * 2835 * 2888 * * * * * * * * * * * * 464 33 103 5388 4466 0 * * * 4959 1000 0 N 34 3882 * 2772 3839 4707 3195 * * 4668 * * 2170 * 3708 5127 2765 * * 4195 * 34 0 * * * * * 0 4933 0 1000 L 35 * * * * * * 4346 2852 * 677 3003 * * * * 5305 * 4759 * * 35 106 * 3820 * * 0 * 4933 0 1000 Q 36 * * 2552 2966 * 4216 2657 * * 4152 * 3809 3034 3753 4568 3023 * * * * 36 399 5375 2200 1000 1000 980 1020 4766 1000 1428 D 37 * * 2547 2371 * * * 3533 4632 4673 2992 * * * * 5094 2625 3145 * 4665 37 167 * 3196 * * 2552 270 4767 0 2877 V 38 * * * * * * * * 3903 4928 4324 3612 1340 * * * 3279 1885 * * 38 115 4946 4507 0 * 175 3132 4549 1000 3069 V 39 4531 4408 * * 3450 * * 3117 * 3695 3493 * * * * * 2777 1563 * 4252 39 187 * 3040 * * 1000 1000 4999 0 1568 A 40 4720 * * 3841 * 5154 * * * * * 2652 4057 * * 1647 1743 5217 * * 40 49 * 4900 * * 2196 355 4859 0 2180 P 41 2497 * * 3702 * * * 4447 * 2715 4118 * 2664 * 4495 4294 3312 2874 * * 41 59 * 4648 * * 398 2053 4878 0 2311 S 42 2795 * 4479 4200 * 4096 * * 4026 * * * 2803 2710 * 2298 3634 4136 * * 42 37 * 5303 * * 1000 1000 4991 0 1280 Q 43 * * 4781 2285 * * 4611 5061 3715 4216 * 4883 * 1755 * * 4730 2615 * 5239 43 0 * * * * 0 * 4997 0 1575 L 44 2368 3664 * * 3063 5641 * 3423 * 2338 2806 * * * * * * 2701 * * 44 41 * 5154 * * * * 4959 0 0 R 45 * * * * * * 3740 * 3042 * 3345 * * * 504 * * * * * 45 0 * * * * * 0 5000 0 1000 Y 46 2329 * 4394 5306 * * * 4280 3621 3646 4295 4267 * 5300 3695 3149 2622 * * 4842 46 0 * * * * 0 * 5000 0 1000 A 47 2876 5168 * * * * * 4103 1482 * * 3337 * 4769 2794 * 4466 3401 * * 47 0 * * * * * * 4959 0 0 I 48 * * * * 3327 * * 984 * 2313 * * * * * * * 2369 * * 48 53 4799 * 2000 415 * * 4959 1000 0 S 49 3237 * * * * 4274 4466 * 2419 * * * * 5034 874 4889 * * * * 49 0 * * * * * * 4959 0 0 A 50 3319 * 3726 1822 * * * * 3316 * * 2882 * 2269 5168 3835 * * * * 50 0 * * * * * * 4959 0 0 Q 51 * * 4308 1482 * * 4792 * 2965 3837 4516 3717 * 3491 4328 * * 4402 * 4274 51 0 * * * * * * 4959 0 0 I 52 * * * * 405 * * 2568 * * 4663 * * * * * * * 4769 * 52 38 5277 * 0 * * * 4959 1000 0 R 53 * * 5401 2026 * * * * 3302 3681 5154 * * * 1485 * 4180 3738 * 4792 53 0 * * * * * * 4959 0 0 N 54 4663 * * 2326 * * 4792 5147 2025 * * 4070 * 3639 1911 4466 * * * * 54 0 * * * * * * 4959 0 0 N 55 * * * * 3424 * 2318 * * 4799 * 1166 * 3970 3003 * * * * 4793 55 0 * * * * * * 4959 0 0 A 56 2547 * 5277 3576 * 4180 * * 2554 * * 4274 * 3396 1752 4316 * * * * 56 0 * * * * * * 4959 0 0 H 57 * * 2342 3516 2990 4466 1815 * * * * 4178 * * * * 3346 * * 3234 57 91 5340 4769 0 * * * 4959 1000 0 I 58 * * * * * * * 2415 3588 2759 * * * * * * 4285 1063 * 4271 58 0 * * * * 0 * 4969 0 1000 T 59 * * 3788 * * * * 4663 1971 * * 3497 * 5147 2976 4466 1540 * * * 59 0 * * * * * * 4959 0 0 D 60 * * 312 4382 * * * * 5247 * * 4232 * 5003 4799 * * * * * 60 58 4663 * 3170 170 * * 4959 1000 0 P 61 4663 * * * * 4793 4769 5210 4382 1850 * * 1773 3968 * * 3892 3165 * * 61 53 4799 * 2000 415 * * 4959 1000 0 K 62 5003 * 2964 4466 * 3455 * * 4162 * * 3576 4082 * 1254 3536 * * * * 62 0 * * * * * * 4959 0 0 V 63 2379 * * * * * * 3243 * 2564 * * * 3715 * * * 1130 * * 63 0 * * * * * * 4959 0 0 I 64 * * * * * * * 1265 4934 3019 4308 * * 3800 * 5008 * 1865 * * 64 0 * * * * * * 4959 0 0 D 65 * * 321 * * * * * * * * 2737 * * 4328 * * * * * 65 0 * * * * * * 4959 0 0 L 66 4466 * * * * * 3301 3966 * 2646 2577 * * * 2397 * * 1878 * * 66 0 * * * * * * 4959 0 0 L 67 3729 * * * * * * * * 437 3520 * * * 4274 * * * 4402 * 67 0 * * * * * * 4959 0 0 I 68 4382 * * * * * * 2145 * 1511 * * * * * * * 1705 * 3869 68 0 * * * * * * 4959 0 0 F 69 4807 * * 4792 2267 4180 3063 2537 * 3675 3275 * * 4274 * * 4137 * 4799 4402 69 0 * * * * * * 4959 0 0 K 70 * * * 4180 * * * 4382 926 4274 * 4328 * 5003 2072 * * * * * 70 0 * * * * * * 4959 0 0 G 71 2880 * * * * 605 * * * * * 4308 * * * 5003 4180 * 3838 * 71 0 * * * * * * 4959 0 0 M 72 * * * 3717 * * 2330 * 3797 * 4162 3896 * 2637 2844 * * * 4328 2471 72 0 * * * * * * 4959 0 0 E 73 4120 * * 1909 * * * 3620 * * 1705 3838 * 2555 * * 4382 * * * 73 0 * * * * * * 4959 0 0 E 74 * * 3466 405 * * 4180 * * 3337 * * * * * * * * * * 74 0 * * * * * * 4959 0 0 L 75 * * * * 3541 * * 4793 * 846 4180 * * * * * * * * 1908 75 0 * * * * * * 4959 0 0 T 76 * * * 2728 4382 * * 4064 3605 4441 * 4466 * 1570 5498 * 4889 3715 * 3337 76 0 * * * * * * 4959 0 0 D 77 3729 * 3086 714 * * * * * * * 5498 * 4402 * 4180 3781 * * * 77 0 * * * * * * 4959 0 0 I 78 2379 4807 * * * * * 3491 * 2845 * * * * * 5210 1725 2486 * 4793 78 0 * * * * * * 4959 0 0 V 79 3838 * * 2520 * * * 2410 * 2140 3003 * * * 4180 * 4466 3113 * * 79 0 * * * * * * 4959 0 0 D 80 3158 * 4889 4347 * * 3838 * 4373 2737 2972 2087 * 5401 * 4382 * * 4402 4180 80 0 * * * * * * 4959 0 0 H 81 4180 * * * 2510 * 1680 4296 * 3037 4793 5154 * 3908 * * * 3030 * 5003 81 0 * * * * * * 4959 0 0 A 82 4889 * * * 3226 * 2124 * * 4382 4402 * * * 4328 5498 * * 1112 * 82 0 * * * * * * 4959 0 0 K 83 * * * * 3715 * * * 605 4402 * * * * 3716 4274 * * * 3456 83 0 * * * * * * 4959 0 0 Q 84 * * * * * * * * * * * 3287 * 454 * 3838 3355 * * * 84 0 * * * * * * 4959 0 0 R 85 * * 3351 * * * 4274 * 3417 5003 * * 4180 3329 1191 * 3602 4308 * * 85 0 * * * * * * 4959 0 0 H 86 3548 3444 2940 * * 3791 2293 * * * * * 4308 * * 3659 1966 5034 * * 86 0 * * * * * * 4959 0 0 H 87 * * * * * * 213 4274 * * * * * 4807 * 4328 * * * * 87 0 * * * * * * 4959 0 0 I 88 5401 * * * 4807 * * 2964 * 2070 3926 * * * * * * 976 * * 88 0 * * * * * * 4959 0 0 I 89 4328 * * * 4402 * * 2230 * 3904 1234 * * * 3586 * * 3126 * * 89 75 5224 5367 1585 585 * * 4959 1000 0 G 90 * * 3431 * * 3487 5283 * 2360 * * 3210 * 2943 2844 5138 2382 * * * 90 44 5049 * 3170 170 * 0 4910 1000 1000 Q 91 * * * * 2406 * * * 3901 4820 * * 5012 3292 4691 * * * 5264 968 91 0 * * * * * 0 4757 0 1000 Y 92 * * * * 505 * * * * 3342 * * * * 4960 * * * 4957 2918 92 912 1094 * 3640 121 0 * 4662 3153 1000 D 93 * * 861 1843 * * * * 4859 * * 4545 3418 * * * * * * * 93 324 2312 * 3352 149 * * 4278 1932 0 F 94 * * * * 139 * * * * * * * * * * * * * 3449 * 94 0 * * * * * * 3794 0 0 L 95 * * * * 4314 * * * * 407 4061 * * * * * * 2883 * * 95 0 * * * * * * 3653 0 0 K 96 * * 2803 3330 * 4017 * * 1785 * * * * 2997 4314 2122 * * * * 96 0 * * * * * * 3653 0 0 N 97 * * 3201 4314 * * * * 600 * * 2462 * * * * * * * * 97 0 * * * * * * 3653 0 0 F 98 * * 4314 * 74 * * * * * * * * * * * * * * * 98 0 * * * * * * 3653 0 0 Y 99 * * * * * * * 4173 * 1218 * * * * * * * * * 958 99 0 * * * * * * 3653 0 0 T 100 3281 * 3999 4052 * * 4478 3162 3859 * * 3457 * 4124 3826 2736 2880 4510 * * 100 0 * * * * * * 3626 0 0 S 101 * * * * * 484 * * * * * * * 3951 * 2183 * * * * 101 0 * * * * * * 3626 0 0 N 102 * * * * * * 3211 * 1730 * * 1481 * * 2106 * * * * * 102 0 * * * * * * 3526 0 0 Y 103 * * * * * * 1381 * * * * * * * * * * * * 699 103 0 * * 0 * * * 1769 0 0 //