HHsearch 1.5 NAME c7a23O_ FAM FILE c7a23O_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7a23O_.a3m DATE Sat Oct 31 08:41:49 2020 LENG 111 match states, 111 columns in multiple alignment FILT 73 out of 77 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.3999 -0.6017 SEQ >ss_dssp CCTTTTCCGGGTSCCEEEECCCCCTTSCCCSSCSCCEEEECCCCEEECSSSSSEEECCTTSSTTTSSCCCSSHHHHHHHHHHTTCCCCCBCCCCCCCCCC CGGGTTCCCCC >sa_dssp EBEEDECDEEBCEBEACACBCEDDEEEEDEEEDDDBCACADBEEDDECEEDEEECDECECBECADDECDBECCEDACDCAEDCDADDEDDECEEEEEEEE DEEDEEEEEEE >ss_pred CCCCCCCCCHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCC CHHHHCCCCCC >ss_conf 9411378712218779998568986533678885159993177887487624204767054315423662899999999998699489976887766644 52320266899 >Consensus xxxxsGxPxexxxRxvrIyxpakxamQSGxxxtxxWxlefexxxxwxnpLMGWtssxDpxxxvxxxxLxFxskExAixyaekxGxxyxVxepxxxxxxxk sYadNFxxxxx >c7a23O_ IGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVK SYSDNFKWKGN >UniRef50_Q8T1V6(74-178:190) NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=NDUS4_DICDI E=5e-31 s/c=1.29 id=30% cov=95% -SFLNGV--EFNGKSVNIYRPSRNTMQTGTLRTKKWVIELPFNPKWNDRLMGWWASKDTLNQLN---LRFNSETDAVAYCKEIGLNYNIVEEDVTLRKKK KYGHRFRYRGD >UniRef50_D0RNX8(5-94:96) NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNX8_9RICK E=7e-28 s/c=1.38 id=35% cov=82% -------------KKAKIYIPTKTATQSAIGNSKKWILKFDKVKSGYDHLMNWTSSFDTQSQVS---LLFETKKQAIDYAKKYNIEFEIIEPKKNKLIIK SYADNF----- >UniRef50_A8IS09(29-149:201) NADH:ubiquinone oxidoreductase subunit n=1 Tax=Chlamydomonas reinhardtii RepID=A8IS09_CHLRE E=2e-28 s/c=1.04 id=35% cov=98% VSRLSGLPrQEQTPRRVLIFSNSKSPEQQGRQKTAfnrsfpHWSMEYlDPADKWINPLIGWTSSADTKHQ-AAVNFQFYTAEEAIAFCERQGWEYEIQVP QIPRdtrsRRYAAYGDNFSIK-- >UniRef50_UPI00006CA406(76-176:185) hypothetical protein TTHERM_00526930 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CA406 E=1e-26 s/c=1.19 id=27% cov=90% --------RDIRGRVARIYIQDTNHMHDTPQipEGYKWTLEFERQAQYKTPWMGWSFNGDTFSKRNH---YFCTLEDAISYCKQMGFGYEVSFPRSRYHT RKSYADNMLWPG- >UniRef50_UPI000186F30F(739-833:1405) ankyrin 2,3/unc44, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186F30F E=5e-22 s/c=1.11 id=35% cov=77% IGIDNGMPGDYMKeRVAIIYKYPKNVMQSGTYNTTTWRVKFNVREKWENPTMGWTSS---SDSLSTLEIHFDTLEGAIEFCRKNEYDYQ----------- ------------ >UniRef50_O69244(18-121:238) Blr5222 protein n=1 Tax=Bradyrhizobium japonicum RepID=O69244_BRAJA E=2e-25 s/c=1.12 id=35% cov=87% ------VPEPVVTKSVfpadaqaVIYKPTPSPMTSGRARAQRWTLRFERRsAPYIEPLMGWTGDDDPLSQVE---LSFPSAEAAIAYARRQGLQYSVEGL PAQGAKPRLISDN------ >UniRef50_A5CDV1(3-93:93) Putative uncharacterized protein n=2 Tax=Orientia tsutsugamushi RepID=A5CDV1_ORITB E=6e-19 s/c=1.05 id=33% cov=80% ---------------VRIYQLSKLPTQSGPT-SKLWTVDFsceEKKNRFIDTTLGWTGTTNPYAS---TKIYFKNKLSAIKFCLNNYLNYELITPKRRKL IVKSYTENFK---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 1160 * 2471 3898 * * * * * * 1712 * * 1 0 * * * * * * 2809 0 0 G 2 1970 * * * * 2119 * * * * * 4225 * * * 1324 4018 * * * 2 0 * * * * * * 3342 0 0 K 3 * * * 3185 3098 * * 2312 4757 4262 * * 2989 4321 4119 4599 3851 2849 * * 3 0 * * * * * * 3450 0 0 V 4 * 5045 4599 * * * * 2361 * 2116 3867 * * * * * 4810 1326 * * 4 0 * * * * * * 3492 0 0 S 5 4810 * 5180 * * 5226 * * * * * 3005 * * * 710 2522 * * * 5 0 * * * * * * 3492 0 0 G 6 * * 6066 * * 152 * * * * * * * * 4173 5090 * * * * 6 0 * * * * * * 3492 0 0 I 7 1892 * * * * * * 3703 * 3509 4729 * * * * * 3853 1123 * * 7 70 * 4396 * * * * 3680 0 0 P 8 * * * * * 4406 * * * * * * 70 * * * * * * * 8 179 3097 * 0 * * 0 3585 1930 1000 E 9 3428 * 5975 1523 * 3686 * * 3229 3796 3113 6601 * 4754 3644 * 5748 5305 * * 9 0 * * * * 0 * 3874 0 1000 E 10 * * 1858 994 * 4614 * * * * * * 4436 * * 4250 * * 4040 5528 10 48 4929 * 0 * * * 3965 1000 0 H 11 * * * * 3893 4464 1949 4112 4555 2426 5496 * * 3353 * 3596 5174 4436 * 3937 11 63 4553 * 0 * * * 3965 1375 0 L 12 5519 * * 4975 5219 * 5045 3036 * 2712 3394 4558 * 3144 3413 4688 3656 2717 * * 12 259 2604 * 0 * * * 3988 2056 0 S 13 2807 * * * * 2879 5566 * 2981 * * 4001 4889 3827 4594 3345 1906 * * * 13 238 2720 * 0 * * * 4003 2176 0 R 14 * * * * * * * * 2591 * * 5606 4938 * 408 * 5196 * * * 14 0 * * * * * * 4121 0 0 K 15 * * * * * * * * 1872 5506 * * 6023 * 2390 2781 2445 2561 * * 15 0 * * * * * * 4160 0 0 V 16 1091 * * * * * * * * * * * * * * * * 915 * * 16 20 6197 * 2807 222 * * 4281 1000 0 I 17 * * * * * * 6050 3485 3215 5586 5019 4443 * * 760 * 6277 3523 * * 17 18 6312 * 0 * * * 4299 1000 0 I 18 * * * * * * * 57 * 5425 * * * * * * * 5986 * * 18 0 * * * * * * 4299 0 0 Y 19 * * * * 1923 * 5151 * 5514 * * * * * 5019 4842 * * * 688 19 0 * * * * * * 4299 0 0 S 20 5983 5932 * * * * * 3224 2091 5352 * * * 2080 1962 3700 * 4993 * * 20 32 5514 * 0 * * * 4299 1000 0 P 21 5950 * * 3491 * * * * * 5184 * 5586 625 3105 4484 * 5843 * * 5660 21 0 * * * * * * 4299 0 0 A 22 1341 * 4574 * * * * 6296 * * * * 3287 5755 5021 1968 2804 * * * 22 0 * * * * * * 4296 0 0 R 23 5021 * * * * * * * 1036 * * * 6345 * 1317 5271 4574 * * * 23 38 5271 * 0 * * * 4296 1000 0 T 24 4538 6024 6665 5376 * * * * * 5201 * 1607 2767 * * 2295 2625 5817 5532 * 24 0 * * * * * * 4296 0 0 A 25 873 * * * * * 4574 * * * * 4708 3624 5420 * 4479 3582 2828 * * 25 0 * * * * * * 4296 0 0 T 26 6091 5476 * 4928 * 4687 * * * 5359 977 6570 * * 5024 5989 1728 * * * 26 24 * 5949 * * * * 4297 0 0 Q 27 * * * * * * 4550 * * * * * * 310 * 4955 3079 * * * 27 37 5289 * 1000 1000 0 * 4300 1000 1000 S 28 4570 * 4576 * * 5359 * * * * * * * 3542 * 352 5494 * * * 28 0 * * * * * * 4297 0 0 G 29 3792 5643 * * * 380 * * * * * * 4323 * * 4382 4584 * * * 29 50 * 4866 * * * * 4305 0 0 S 30 5985 * 5070 5481 * * 6559 4004 3326 2722 * 4438 3259 5646 2631 5237 2364 5000 5397 * 30 27 * 5739 * * 0 * 4277 0 1629 G 31 1550 * 5163 * * 3068 3396 * 5067 5501 * 3661 * 3655 5989 4006 5234 6211 5610 3889 31 126 4568 4582 1000 1000 0 * 4288 1000 1000 K 32 * * * 4564 * 3183 4584 * 2242 4678 * 2069 * 4653 1911 6449 * * * * 32 23 5971 * 2807 222 0 * 4246 1000 1508 L 33 3871 * 5910 4090 6504 3394 * 6161 * 4817 6328 * 4594 5643 5048 3624 1067 4711 * * 33 16 * 6545 * * * * 4305 0 0 G 34 4499 * 4358 * 5477 4605 3775 * 1628 5814 * 2971 6000 4132 3155 4165 5700 * * 4583 34 27 5734 * 2585 263 0 * 4303 1000 1000 K 35 3925 * 5347 3926 4652 4755 3332 * 1918 4101 * 6002 5387 4176 3925 4868 3706 5223 * 4427 35 0 * * * * * * 4305 0 0 W 36 * * * * * * * * * * * * * * * * * * 0 * 36 0 * * * * * * 4305 0 0 K 37 * 5228 * 5443 * * 5971 3748 2545 4643 5275 * * 4530 1990 5745 3333 2427 * 5390 37 0 * * * * * * 4309 0 0 I 38 * * * * 5877 * * 1841 * 982 3289 * * * * * * 3388 * * 38 17 6378 * 1000 1000 * * 4309 1000 0 N 39 * * 2571 1091 5111 * 5506 6543 3938 * * 5307 * * 3514 4147 6519 4180 * * 39 0 * * * * * * 4309 0 0 F 40 * * * * 561 * * 5160 * 4473 * * 4832 * * * * * 3639 2903 40 203 2929 * 1476 643 * * 4309 2831 0 V 41 5652 6611 1876 1108 * 5506 * * 4809 * 5111 5717 5526 5877 * 5443 5989 4307 * * 41 126 3580 * 1312 744 * * 4309 2170 0 S 42 4521 * 6378 4378 5526 6049 * * 3120 * * 3690 2383 * 2550 3413 2797 3905 * * 42 186 3049 * 235 2733 * * 4309 2590 0 T 43 3133 * * 3266 * 3857 5916 * 5306 6359 6509 5526 5443 2993 1747 3614 4274 4424 * * 43 267 2563 * 400 2045 * * 4309 2700 0 L 44 2135 * 4756 2028 * 5100 5020 * 4804 6243 * 3797 3003 4914 4416 4632 3963 * * * 44 17 6378 * 0 * * * 4309 1000 0 K 45 * * * * 5852 * 5877 * 2229 * * * 2429 4031 1332 5057 4005 * * 5971 45 35 5390 * 0 * * * 4309 1000 0 W 46 5803 * 6736 5270 3950 4005 5846 * 4659 * 6825 * 5670 * 4554 6014 4742 5648 1012 3021 46 19 6271 * 0 * * * 4309 1000 0 E 47 * * 6701 1313 * * 5046 2013 4589 * * 4553 4702 4945 4708 * 5111 3888 * 5639 47 58 4672 * 0 * * * 4309 1900 0 N 48 * * 1951 2268 * * * * * * * 1166 * * * 4423 4589 * * * 48 0 * * * * * * 4309 0 0 P 49 4932 * 4130 5688 * * 5639 * * * * 6030 524 * 5029 3637 5306 5390 * * 49 0 * * * * * * 4309 0 0 L 50 * * * * 5390 * * 6594 * 206 * * * * * * 4123 * 4589 * 50 0 * * * * * * 4309 0 0 M 51 * * * * * * * 3948 5332 4348 304 * * * * * 4287 * * * 51 0 * * * * * * 4309 0 0 G 52 * * * * * 58 * * 5671 * * 5639 * * * * * * * * 52 0 * * * * * * 4309 0 0 W 53 * * * * * * * * * * * * * * * * * * 183 3070 53 0 * * * * * * 4309 0 0 T 54 2945 6896 * 5767 * * * 4659 * 5679 * 5229 * 3737 * 3419 1020 3748 5526 * 54 0 * * * * * * 4309 0 0 S 55 4169 * * 5561 4589 1782 * * * * * * * * * 866 4566 * * * 55 0 * * * * * * 4309 0 0 T 56 * * 5639 * * 3567 * * * * * 3149 * * * 811 2232 * * * 56 28 * 5710 * * * * 4309 0 0 G 57 2103 * 3428 * 5642 1227 5635 * 3937 * * 5779 * * 4635 4410 4797 * * * 57 0 * * * * * 0 4300 0 1000 D 58 * * 112 5066 * * * * * * * 4485 * * * * * * * * 58 144 * 3392 * * * 0 4300 0 1000 P 59 5382 * * * * * * * * * 4178 * 955 * * 5128 1410 * * * 59 0 * * * * 2566 267 4326 0 2145 Y 60 6003 * * * 4517 * * 6456 4340 1223 4389 5340 * 3443 3944 5556 6573 * * 2392 60 27 * 5767 * * * 0 4322 0 1940 A 61 2451 * 5519 5877 * 5187 5514 5278 5719 4302 * 5402 * 2632 5217 1581 3797 6034 * * 61 88 * 4081 * * 252 2642 4305 0 2125 N 62 * 6447 5189 5613 5543 * 4332 * 4548 * * 2166 * 1339 * 3171 5101 * * 3863 62 255 * 2625 * * * 0 4255 0 2315 V 63 * * * * * * * 2738 * 2861 2588 5116 * 5246 4417 * * 1171 * * 63 627 * 1504 * * 2018 409 4081 0 3395 G 64 4157 * 4747 2740 4910 3436 4145 * * * 4641 2298 * 2510 4927 3025 * * * * 64 883 * 1127 * * 2264 337 3996 0 3946 D 65 2715 * 4906 2720 * 2034 3587 * * * * 4473 4287 4342 3533 * 3277 * * * 65 125 * 3587 * * 2280 333 3849 0 3654 S 66 4980 * * * * * * 4759 * 2983 3668 * 4310 * * 2806 1338 2865 * * 66 0 * * * * 904 1103 3965 0 3599 A 67 3876 * 6026 4565 * 4874 4673 4729 3809 5485 * 4778 4860 3865 1993 4348 4711 2569 * 5443 67 0 * * * * 179 3101 4317 0 3356 L 68 * * * * 5644 * * 3456 * 561 3646 * * * * * 5424 3212 * * 68 0 * * * * 0 * 4213 0 1000 A 69 5468 * 4987 3474 4048 * 4200 5117 2515 5655 * 4239 * 3438 3234 3380 3836 6031 * 3563 69 0 * * * * * * 4330 0 0 F 70 * * * * 0 * * * * * * * * * * * * * * * 70 0 * * * * * * 4330 0 0 D 71 2920 4575 2051 3813 * 5440 6771 * 4166 * * 4000 2213 * 5033 4051 5518 * * 4850 71 0 * * * * * * 4330 0 0 S 72 * * 4153 6031 * * * * * * * 3865 * * * 1219 1217 * * * 72 0 * * * * * * 4330 0 0 E 73 3300 * * 4490 * * * * 1084 2707 * * 6366 * 2360 6421 * 6560 * * 73 0 * * * * * * 4330 0 0 E 74 4364 * 3845 474 * * * * 4485 5304 * * * 4650 * * 4259 * * * 74 0 * * * * * * 4330 0 0 A 75 2103 * 1679 2456 * 5734 * * 5946 4725 * * * 5045 6533 2656 * * * * 75 0 * * * * * * 4330 0 0 A 76 0 * * * * * * * * * * * * * * * * * * * 76 0 * * * * * * 4330 0 0 K 77 * * * 3305 * * * 821 4427 6685 5403 * * 6491 * * 6482 2115 * * 77 0 * * * * * * 4330 0 0 S 78 1580 * 3480 4095 5946 6675 4809 6518 3888 6540 * 6031 * 5457 3135 3075 4751 * * 4087 78 0 * * * * * * 4330 0 0 F 79 * 6015 * * 1088 * 6088 * * * * * * * * * * * * 1001 79 0 * * * * * * 4330 0 0 A 80 645 1590 * * * * * * * * * * * * * * * 5135 * * 80 0 * * * * * * 4330 0 0 E 81 * * 4679 1180 * * * 5669 1834 5304 * 4775 * 3833 3920 6606 6491 * * * 81 0 * * * * * * 4330 0 0 R 82 4321 6771 6606 4605 * 6385 * * 1336 * * 4818 * 3900 1495 6359 6369 * * * 82 0 * * * * * * 4330 0 0 H 83 * * * 4080 * * 2891 5542 5024 6031 3793 2286 * 1679 3485 * * * * 4066 83 0 * * * * * * 4330 0 0 G 84 * * 5862 5734 * 305 5852 * 5783 * * 3882 * * 5278 * * * * 5304 84 0 * * * * * * 4330 0 0 W 85 * * * * 3921 * * 2123 * 2399 * * * * * * * 5290 1243 3903 85 0 * * * * * * 4330 0 0 D 86 4151 5932 2241 2448 * 4575 5862 5843 3895 6107 * 3081 3845 4083 6366 4260 3985 * * * 86 0 * * * * * * 4330 0 0 Y 87 4549 6421 * * 2354 * 4866 * * 5458 * * * * * * * * 4629 616 87 0 * * * * * * 4330 0 0 K 88 * 6606 4491 1809 4266 * 4879 4801 4393 4853 6786 5542 * 3974 3611 5458 4697 3246 6014 3355 88 0 * * * * * * 4330 0 0 V 89 6222 * * * * * * 1935 * 3602 * * 5884 * * * * 676 * * 89 17 * 6429 * * * * 4325 0 0 K 90 * * 3488 2194 5054 * * 2432 4519 4773 * * * 2158 5842 4571 4328 4750 * 5252 90 63 4555 * 0 * 0 * 4317 1707 1000 K 91 4007 * 4324 962 4536 5898 * * 4933 * 5031 5877 4324 3643 6512 6138 4081 5650 * * 91 0 * * * * * * 4455 0 0 P 92 3361 * 5844 4728 5048 5971 * * 5904 5543 * 4722 622 * 6875 5851 4964 5819 * * 92 45 5023 * 1000 1000 * * 4353 1000 0 N 93 3152 5840 4659 5490 * * 3677 5277 1961 * * 2823 4019 2936 3598 * 6225 5822 * * 93 33 5461 * 3700 115 * * 4297 1000 0 T 94 4609 * 3484 3070 * 5624 5423 3415 2562 5002 * 5804 2803 5410 5068 3729 4517 3662 * * 94 0 * * * * * * 4298 0 0 P 95 4006 * * 5807 * * * 6236 2957 6152 * 4730 2829 5364 1224 4932 4161 4496 * * 95 56 4720 * 796 1238 * * 4297 1408 0 L 96 4662 * 6238 4527 5808 4109 4381 4901 1619 4583 5693 5838 5084 * 2808 5807 4186 5233 * 3819 96 101 3890 * 1735 515 * * 4297 2042 0 L 97 4200 * * 4487 3392 4660 4488 3060 5823 2886 5120 * 4037 5807 2703 5566 4127 3590 * 5250 97 24 5893 * 2000 415 * * 4297 1000 0 K 98 6534 * 5027 * * 4022 * 4289 1709 5777 * 6128 4767 4922 1653 5579 3888 4993 * * 98 40 5207 * 1000 1000 * * 4292 1000 0 V 99 4871 * 5203 5737 * 3883 4526 4418 3301 4961 * 6102 1448 * 3673 4486 * 3556 * 4672 99 0 * * * * * * 4276 0 0 K 100 3422 * * * * 5314 * 5230 531 4997 5134 * * 4961 4456 * * 5304 * * 100 0 * * * * * * 4276 0 0 S 101 2844 * 5276 * * 5314 * * 5134 5172 * 4301 * 3010 5005 922 * 5658 * * 101 0 * * * * * * 4276 0 0 Y 102 * * * * * * * 5172 * * * 5005 * * * * * * * 88 102 0 * * * * * * 4276 0 0 S 103 1385 * * * * 2064 * * * * * * * 3677 * 1896 5005 * * * 103 0 * * * * * * 4276 0 0 D 104 3651 * 1025 3507 * * 4181 6101 * 5822 * 3467 * 6250 5737 3329 4974 * * * 104 46 5005 * 1000 1000 * * 4276 1000 0 N 105 * * * * * * * * 5446 * * 118 * * 5134 * * 5203 * * 105 0 * * * * * * 4276 0 0 F 106 * * * * 112 * * * * * 4415 * * * * * * * * 5157 106 0 * * * * * * 4243 0 0 K 107 2500 * 4431 * * * * * 2576 3235 * * * 5448 2561 1687 * * * * 107 0 * * * * * * 3914 0 0 W 108 * * * * 2244 * * 4543 * * * * * * * * * * 964 2100 108 0 * * * * * * 3730 0 0 K 109 * * * * * * * * 1412 * * * 2606 * 1120 * * * * * 109 0 * * * * * * 2929 0 0 G 110 * * * * * 306 * * * * * * * * 2388 * * * * * 110 0 * * * * * * 2455 0 0 N 111 * * 636 * * * * * * * * 1488 * * * * * * * * 111 0 * * 0 * * * 1902 0 0 //