HHsearch 1.5 NAME c6z16c_ FAM FILE c6z16c_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6z16c_.a3m DATE Sat Aug 15 08:45:02 2020 LENG 107 match states, 107 columns in multiple alignment FILT 111 out of 188 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.1 EVD 0.4881 1.4809 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHTSSBHHHHHHHHHHHHHHHHHHHHHHHCCCCCBCSCTTSCCSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC CBTTTCC >sa_dssp EDEECDEDBDECCEDADECDECECBDEBBDACCCDCEADCDCDDBEDDCEEDBDDEEEDEDEEDCDEEBDDEBEECDEECEDECDECDEDBEDCDEEEED CDDEEDE >ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CCHHHHC >ss_conf 9489999999999999999954339999999999875799999997325688998357774322151026999999999999999999999999997288 5288729 >Consensus mxlxxxlxxxxLxxxGxylllxrnlirxiiglxixxxxvnlxxixxgxxxgxxxPixxxxxxxxxDPlPQALvLTaIVIgxaxtalxLalxxrxyxxxgt xdxxxlR >c6z16c_ MELLMIVVIGCLFAAATYLLLSKSLLRIIIGTGLLSHGAHLLLLTMGGLKAGAPPLLGEKASRYVDPLPQALILTAIVISFGVTAFFLVLAYRSYQEIGT DHMEGMK >UniRef50_C6XI89(6-65:238) NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XI89_HIRBI E=2e-05 s/c=0.84 id=22% cov=48% -------VIILLMMGGLYILFEsQNLIKRLVGLSIFQTSVIVFYVTLGKVASGTAPIY------------------------------------------ -------- >UniRef50_C5A2Q0(7-121:134) Membrane bound complex 1, subunit C (Mbc1C) n=6 Tax=Thermococcus RepID=C5A2Q0_THEGJ E=4e-09 s/c=0.54 id=25% cov=98% --ITIVSLLATLIISVYGIVAKPNLVKKLIALTIFGDTANVLVVLLGYRViyPVKPPIlpelsksaVGEFVKTAVDPLPQALVITAVVIGMAVNILIAFA VIQIYRIYGTLDVREV- >UniRef50_C7Q1G7(1-118:122) NADH-ubiquinone oxidoreductase chain 4L n=2 Tax=Actinomycetales RepID=C7Q1G7_CATAD E=2e-16 s/c=0.74 id=26% cov=101% MIVVNYLASAALFCLGLYTVLtRRNMIKMVMGLSLMESSTYVLFISMAYRSGSTAPVLVDPPkgrspeqlaaGNVADPVLQNFCLTAIVIGVAVTAVFLS VVVRIAQHRRTLDADRVR >UniRef50_Q3JBL4(7-99:105) NADH-ubiquinone oxidoreductase, chain 4L n=3 Tax=Proteobacteria RepID=Q3JBL4_NITOC E=6e-09 s/c=0.66 id=29% cov=87% --LLYILTGIGLFILGLYaLFVHSHLLRKILALNIMASGVFLVYVAAAYRS----------PEAISDPVPQAMVLTGIVVASASMLLGLALAARVKAKTG RTELD--- >UniRef50_C9RKX7(1-97:101) NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKX7_FIBSS E=0.0008 s/c=0.46 id=16% cov=90% MNLLNCLILAfLLFGIGVWGLMrRRHLIGMLISIELMLNAANINFISFAYFTAHDA------------TAGALFSIFVIAVTACEMAIALAIIVTMYRRH KSLDVDQLR >UniRef50_A5UM49(4-116:128) Energy-converting hydrogenase B, subunit E, EhbE n=3 Tax=Methanobacteriaceae RepID=A5UM49_METS3 E=4e-12 s/c=0.64 id=29% cov=94% MQLAALFTAGALVVVGLFaAIFIDNIVKKIIGISFIEEGANLFIIAIGYKPGGVVPILMPGMSPswfavnSAYPLPFGLVLTSIVIGASTLAVMLAIVMV IYKKYGT------- >UniRef50_A8F8X0(1-106:112) NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Thermotoga lettingae TMO RepID=A8F8X0_THELT E=2e-10 s/c=0.63 id=24% cov=100% MNFVEYICLIVILVALSGIILRKNLVMKIVCLDIMSTGVVSFFVVVSSRFGEKVPIVSETAEAYAHPVPQAVIVTAIVIGFATLSLSFTVIMILIQRLHT TDTEKI- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 422 * * * * * * 1981 * * 1 0 * * * * * * 4658 0 0 E 2 4704 * 4007 2123 * * 5930 2996 * * * 1779 * 4722 * 3009 3744 * * * 2 0 * * * * * * 4809 0 0 L 3 6356 * 6136 * 3337 * 5663 2888 5550 1246 3124 * * * * 5297 4090 4709 5151 6411 3 0 * * * * * * 4958 0 0 L 4 3665 * * * 3252 5108 * 2605 * 1638 * * * * * 4926 3523 3890 * 3130 4 0 * * * * * * 5043 0 0 M 5 3948 * * 5615 4156 * * 3107 * 1459 4525 3806 4093 * 5672 5429 4477 6225 * 3262 5 0 * * * * * * 5044 0 0 I 6 1626 4663 * * 4257 * 5824 3840 * 2578 4766 * 4628 * * 3785 5411 4450 * 3180 6 0 * * * * * * 5127 0 0 V 7 3727 * * * 3852 6449 * 2362 * 1384 6336 * * * * 5153 5425 2405 6216 * 7 0 * * * * * * 5108 0 0 V 8 3002 5109 * * 6258 6247 * 3745 * 2806 4422 * 6049 * * 4414 2037 2000 * * 8 0 * * * * * * 5086 0 0 I 9 2188 5477 * * 4477 3769 * 1858 * 2724 4583 * * * * 5147 4995 3167 * * 9 0 * * * * * * 5086 0 0 G 10 1661 * * * 4460 1384 * 3949 * 4960 6684 * * * * 4056 6314 3722 * * 10 52 4823 * 0 * * * 5089 1547 0 C 11 3432 5983 * * 4842 3183 * 2981 * 1766 5505 * * * * * 5583 1987 5020 * 11 15 6573 * 0 * * * 5083 1000 0 L 12 * * * * 6035 * * 3428 * 405 3902 6405 * * * * 5331 4917 * * 12 0 * * * * * * 5084 0 0 F 13 3701 * * * 1266 5476 * 3454 * 3360 3432 * * * * 4860 5762 3048 * 5078 13 16 * 6513 * * * * 5096 0 0 A 14 2080 4110 * * 4272 2202 * 3389 * 2789 4740 5526 * * * 4957 4094 4426 * * 14 0 * * * * * 0 5089 0 1000 A 15 3044 4295 * * 6635 3395 * 1890 * 2545 5757 * * * * 3897 4901 2997 6772 5155 15 10 * 7241 * * * 0 5089 0 1000 A 16 3740 * * * * 287 * * * 4849 * * * * * 4315 * 5607 * * 16 72 5517 5203 0 * * 0 5090 1000 1496 T 17 3898 5448 * * 3596 * * 2749 * 1526 6453 * * * * 5721 3614 2274 * 6314 17 12 6902 * 0 * * 0 5089 1000 2076 Y 18 5359 * * * 3366 3778 6586 * * * * * * * 6497 5489 4844 * 4078 582 18 295 2436 * 0 * 391 2074 5089 3561 2076 L 19 4632 5582 * * 5525 2686 * 3072 * 1205 3215 * * 6649 * 6730 4185 5204 * * 19 32 5517 * 1585 585 0 * 5097 1082 1000 L 20 5512 6035 * * 3830 * * 2042 * 1482 3008 * * * * * 6642 2669 * * 20 10 7217 * 0 * * * 5096 1000 0 L 21 4886 * * * 3668 * * 5156 * 1059 3044 * * 6193 7235 5026 4041 2884 * 6524 21 256 2619 * 0 * * * 5115 3735 0 S 22 5042 * 4760 3917 * * 5885 6566 2524 6680 * 4695 * 3420 2085 2952 2963 6231 * 5882 22 55 4732 * 0 * * * 5100 2421 0 K 23 4791 * 5389 6686 * * 4409 * 2519 6536 * 4873 3544 4776 978 5897 5865 * * * 23 87 4093 * 0 * * * 5100 2596 0 S 24 6065 * 3337 5954 * 5527 3588 * * * * 916 * 6674 5348 2392 6606 * * * 24 18 6338 * 0 * * * 5100 1000 0 L 25 4772 * * * 4840 * * 3155 * 780 3235 * 7298 * 6641 5198 5788 4806 5510 6930 25 0 * * * * * * 5101 0 0 L 26 5685 * * * 4477 * * 1554 6554 2505 4127 * * * * 6610 3961 1898 * 6928 26 0 * * * * * * 5090 0 0 R 27 * * * * * 5673 4302 6095 1431 3478 5415 * 5784 7120 1381 6261 6863 * * * 27 0 * * * * * * 5090 0 0 I 28 6289 6875 * * 5894 7008 * 2497 1671 3725 3118 * * 5798 4863 6484 5305 2528 6681 * 28 0 * * * * * * 5090 0 0 I 29 5329 * * * 5923 * * 1523 * 1796 4595 * * * * * 6840 1876 * * 29 0 * * * * * * 5090 0 0 I 30 6027 * * * 4283 5652 * 1399 * 1648 3361 * * * * 5904 * 3407 7153 * 30 0 * * * * * * 5090 0 0 G 31 2190 5276 * * 6333 883 * * * 6402 6663 5923 * * * 2626 * * * * 31 0 * * * * * * 5090 0 0 T 32 5995 * * * 3703 * * 2593 * 1030 3435 * * * * 5532 5656 3081 * * 32 17 * 6436 * * * * 5090 0 0 G 33 4294 * 3818 3358 5896 3720 * 5301 * 5134 3942 2333 * * * 2866 3092 3223 * 6801 33 0 * * * * 0 * 5083 0 1000 L 34 6192 * * * 5070 * * 1728 * 1450 4124 * * * * * * 2112 * * 34 0 * * * * * * 5090 0 0 L 35 5103 5618 * * 2942 * * 3126 * 1707 1933 * * * * 6047 6639 3291 * 6585 35 0 * * * * * * 5090 0 0 S 36 3793 6775 4232 3342 * 1828 * * * 3833 * 4779 * 2815 * 2290 4962 * * * 36 0 * * * * * * 5090 0 0 H 37 3930 * 3724 5212 * 4082 2830 5881 * 6010 * 2496 * 4623 * 2631 2472 6690 * 5048 37 0 * * * * * * 5090 0 0 G 38 1362 * * * * 1471 * * * * * 6436 * * * 2434 4227 * * * 38 0 * * * * * * 5090 0 0 A 39 2030 * * * * 5204 * 2784 * 4695 * * * * * * 3183 1204 * * 39 13 6835 * 0 * * * 5090 1000 0 H 40 * * * * 3297 * 4749 3729 * 3992 6835 1030 * * * 5532 6519 2984 * 3934 40 0 * * * * * * 5090 0 0 L 41 5353 * * * 4494 * * 4316 * 625 4798 6436 * * * 5167 5030 3138 * 6261 41 0 * * * * * * 5090 0 0 L 42 4912 * * * 2094 5789 * 3537 * 1498 3799 4171 * * * * 6699 3586 6467 4549 42 12 * 6922 * * * * 5090 0 0 L 43 4995 * * * 2223 * * 2331 * 1464 4888 * * * * * 6612 4012 6257 3754 43 0 * * * * 0 * 5087 0 1000 L 44 6859 6678 * * 3371 7011 * 1876 * 2076 5289 * * * * * 4943 1692 * * 44 0 * * * * * * 5090 0 0 T 45 2006 * * * 5696 4395 * 4025 6863 2968 5464 6690 * * * 2058 2680 4111 * * 45 0 * * * * * * 5090 0 0 M 46 2833 * * * 3972 * * 2472 5738 2536 3178 * * * * 3022 3897 3012 * * 46 21 * 6128 * * * * 5090 0 0 G 47 2208 * 6013 * 6093 801 * * * 6432 * 5977 * * * 2874 5980 * * * 47 99 5184 4685 1386 696 * 0 5078 2032 1000 G 48 3380 * 6421 * 5741 2440 * 6879 5337 5780 7137 * * 4849 3208 3768 5337 4649 * 1515 48 54 5502 6073 1665 547 1513 622 5080 1582 2698 L 49 * * 5902 5760 4107 5211 6362 3455 3457 2436 6845 5041 * 7125 2451 3703 4225 3525 6902 4442 49 68 5555 5339 1000 1000 951 1051 5080 1385 2567 K 50 3835 * 6891 3179 4823 3776 5338 6828 3721 5089 6771 4903 4013 4835 4071 3017 2721 4154 6324 5564 50 42 5639 6845 645 1472 2435 295 5078 1628 2502 A 51 3754 * 4973 5376 * 1036 6636 6616 5074 6749 * 4498 3545 6645 3774 4854 5295 * 4798 6151 51 0 * * * * 1938 436 5072 0 2504 G 52 3282 * 6645 3956 * 1841 4677 6614 4725 4450 5011 4193 * 4667 3781 3060 4554 4703 * 6380 52 122 5601 4051 1115 893 * 0 5064 1578 2310 A 53 3085 * 3892 4485 5115 4403 6541 4458 3970 4518 4931 5281 4370 4358 4111 4139 2660 3646 * 5508 53 15 6616 * 0 * 2755 231 4972 1000 3161 P 54 1894 * 6820 4320 7107 * * 4749 * 5048 * * 1333 5714 * 5871 4125 3428 * 6136 54 102 * 3874 * * 2217 349 4975 0 2990 P 55 3671 * * * 5534 * * 4106 * 5615 5607 6769 385 * * 5266 * * * * 55 16 * 6462 * * * 0 4898 0 3260 L 56 * * * * 4222 * 5366 1039 6090 2592 5915 6335 * 5470 * * * 2505 * 5187 56 74 5024 5687 2890 209 3201 166 4886 1821 3258 L 57 * * 5857 * 3584 3852 * 2462 6059 1982 3968 * 4526 * * 5686 6516 2580 * 3725 57 119 3777 7356 1690 535 3889 101 4905 3038 3432 G 58 4820 * 3291 4972 6453 2435 5316 5125 6515 5203 5145 4741 2409 5668 6060 3075 3698 4334 * 6872 58 171 3640 4982 2058 396 1227 804 4915 3158 3523 E 59 3930 * 3469 2423 * 3637 5996 * 4750 5669 * 4191 2828 3859 3834 4681 3855 6650 * 4260 59 136 3686 6347 1757 506 2079 390 4941 3131 3193 K 60 4262 * 3661 4144 4001 2041 4081 * 4835 4590 6319 4407 3558 * 4483 4124 4284 3773 * * 60 139 3444 * 1446 660 3158 171 4972 3174 3115 A 61 2919 * 5277 4967 5735 3353 6140 6472 * 5131 5309 6475 2357 4196 5135 4240 3802 2856 4829 5225 61 223 2899 6751 2659 249 2237 344 4978 3644 2878 S 62 3132 * 3822 2502 * 3453 4518 6359 4110 4495 * 5396 4888 4155 * 2349 3657 * * * 62 112 3744 * 2498 281 2133 373 4981 3034 2816 R 63 3665 * 4301 2863 * 3976 * 5637 5041 4432 6744 3723 3224 3481 3048 3904 4311 4239 * * 63 131 3527 * 2803 223 * 0 4983 3280 2926 Y 64 2318 * 4747 * 4702 * 5822 4851 * 5087 3318 * 4218 7063 * 4285 6396 2876 6842 1875 64 14 6744 * 1585 585 * 0 4983 1000 2926 V 65 1321 * * * * * * 4236 * 6201 6948 7079 * * * 3279 3597 1591 * * 65 0 * * * * 834 1188 4983 0 2926 D 66 * * 495 * * 5697 6149 * * 4572 * 2572 * * * 5487 * * * 5351 66 14 6680 * 2000 415 642 1477 4972 1000 1792 P 67 5193 * * * * * 4434 * * * * * 157 * * * 5090 * * * 67 0 * * * * * 0 5075 0 1000 L 68 5611 * 5477 * 6251 * * 3604 * 767 * * * * * 6043 5347 2165 * 6462 68 0 * * * * * 0 5075 0 1000 P 69 4836 * * * * 4106 * 5399 * 5070 6344 * 436 * * 6047 6218 3769 * * 69 0 * * * * 0 * 5075 0 1000 Q 70 4644 * * * 5607 * 2582 * * * * * * 458 * 4484 * * * * 70 0 * * * * * * 5127 0 0 A 71 396 * * * * 4854 * * * 5639 * 6812 * * * 5160 5440 2994 * * 71 0 * * * * * * 5127 0 0 L 72 * * * * 2984 * * 4524 * 597 3245 * * * * * * 3982 * * 72 0 * * * * * * 5127 0 0 I 73 3628 6812 * * * * * 2037 * 5913 3139 * * * * 5639 3216 1291 * * 73 0 * * * * * * 5127 0 0 L 74 * * * * * * * 3131 * 280 5916 * * * * * * 4457 * * 74 0 * * * * * * 5127 0 0 T 75 * * * * 3842 * * 6256 * * * * * * * * 125 * * * 75 0 * * * * * * 5127 0 0 A 76 712 * 5131 * * 3138 * * * * * 5596 * * * 3053 4870 3792 * * 76 0 * * * * * * 5127 0 0 I 77 * * * * * * * 172 * 4148 * * * * * * * 4161 * * 77 0 * * * * * * 5127 0 0 V 78 4870 * * * * * * * * * * * * * * * 5561 82 * * 78 0 * * * * * * 5127 0 0 I 79 * * * * * * * 376 * 6122 * * * * * * * 2218 * * 79 0 * * * * * * 5127 0 0 S 80 2854 * 4834 5674 * 847 * * * * 6256 6804 * * * 2900 3393 * * * 80 0 * * * * * * 5127 0 0 F 81 2784 * * * 1673 * * 5021 * 2457 3441 * * * * 6898 * 2134 * * 81 0 * * * * * * 5124 0 0 G 82 979 4078 * * * 2302 * * * * * * * * * 2358 5451 6277 * * 82 0 * * * * * * 5124 0 0 V 83 5087 * 6454 3833 5828 7013 * 3737 * 3043 3625 5888 * 6328 * 5255 1980 1851 * * 83 0 * * * * * * 5124 0 0 T 84 4159 * * * 4816 * * 4919 6277 2375 4759 4945 * 3898 * 4539 1180 4355 * * 84 0 * * * * * * 5124 0 0 A 85 709 5746 * * * 3011 * 4056 * 5179 * * * * * 3309 4852 5483 * * 85 0 * * * * * * 5124 0 0 F 86 * * * * 1738 * * 4163 * 1277 5553 * * * * * * 2465 * 5086 86 17 6454 * 1585 585 * * 5124 1000 0 F 87 1903 6614 * * 4943 3116 * 3974 * 1778 2949 * * * * 3778 * 5871 * * 87 0 * * * * * * 5124 0 0 L 88 4667 6511 * * 5630 6424 * 3941 * 484 4296 * * * * 5607 6819 4127 * * 88 0 * * * * * * 5124 0 0 V 89 1242 * * * 4398 4604 * 4503 6252 * 5583 * * * * 3272 3454 2292 * 6424 89 0 * * * * * * 5124 0 0 L 90 5836 5904 * * 4378 6545 * 2439 6445 882 3859 * * * * * * 3634 * 5717 90 0 * * * * * * 5106 0 0 A 91 1357 6013 * * 6081 * * 2538 * 4439 6663 * * * * 4015 3966 2213 * 6675 91 23 6011 * 1585 585 * * 5106 1000 0 Y 92 4767 * * * 6718 7017 4952 2231 6517 2310 3764 * * 6192 4558 6909 6908 2887 * 2274 92 16 6486 * 1000 1000 * * 5160 1000 0 R 93 3683 * * 6398 * * 6768 4459 3266 5236 6325 4935 * 2863 1065 * 5052 5734 5988 * 93 0 * * * * * * 5192 0 0 S 94 2824 * 6493 * 6418 4826 6265 1898 * 2064 5569 5748 * 5240 * 3671 3923 3842 * * 94 0 * * * * * * 5171 0 0 Y 95 4235 * 6493 5641 4111 6963 3100 5272 5271 * * 6599 * 5930 3873 5075 * * 3971 1020 95 0 * * * * * * 5171 0 0 Q 96 4411 * 4371 2824 7076 5418 6886 * 2339 5073 * 6276 * 2521 2073 4768 6716 5269 * * 96 0 * * * * * * 5144 0 0 E 97 3667 6513 4151 2977 * 6341 3741 5603 3051 2898 * 4334 * 4717 2835 4885 4207 4772 * 6363 97 0 * * * * * * 5143 0 0 I 98 4846 * 5016 * 3288 6077 3807 5172 4732 2921 * 4941 * 5402 3836 5791 2890 5438 * 2023 98 0 * * * * * * 5129 0 0 G 99 5890 * 3896 5041 * 654 5061 * 3504 * * 5395 6210 6661 4005 5475 * * * * 99 32 5502 * 1776 498 * * 5147 1579 0 T 100 6151 6503 4922 5387 * * 4393 5309 * * * 6269 * * 5665 2272 766 * 5825 * 100 18 6368 * 0 * * * 5129 1000 0 D 101 4565 * 1895 6838 5137 * * 4023 * 1350 6781 * 6606 * * 5700 3805 3510 * * 101 0 * * * * * * 5098 0 0 H 102 4737 * 965 2176 * * 4941 * 5977 * * 3065 * * 6672 5352 * 6361 * 6086 102 17 6413 * 2585 263 * * 5072 1000 0 M 103 3285 * * 3967 * 6486 * 2328 * 3434 4242 * 4742 6435 * 4810 3777 1692 6548 * 103 0 * * * * * * 5066 0 0 E 104 5837 * 1368 2351 * * * * 5147 * * 5499 * 5419 2035 3813 6630 * * * 104 0 * * * * * * 5027 0 0 G 105 3386 * 5056 1653 * 3952 * * 2724 6018 * 4796 * 3911 3104 5066 6267 4454 5830 * 105 0 * * * * * * 4927 0 0 M 106 * * * * * * * 1872 * 1143 3288 * * * * * 5766 2706 * * 106 0 * * * * * * 4865 0 0 K 107 * * * * * * * * 2916 * * * * * 205 * * * * * 107 0 * * 0 * * * 4250 0 0 //