HHsearch 1.5 NAME c6ygbC_ FAM FILE c6ygbC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6ygbC_.a3m DATE Sat Oct 31 08:31:12 2020 LENG 77 match states, 77 columns in multiple alignment FILT 107 out of 418 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.1 EVD 0.4639 1.0789 SEQ >ss_dssp CCCCCHHHHTTSEEEEEESSSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEECTTTEEEEECCHHHHHHHC >sa_dssp EEEDEEEDCDECEBCABBEEECDACBCBDDCDEEDDBDACEACBDDEEEDEECDECEBDEECCECDECEEEDCDEBE >ss_pred CCHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCHHCCCCC >ss_conf 97766899679859999919909999999997756829746899975845323079987885899992620300359 >Consensus xxxxxLxxxlgxxvxVxlxdGrxxxGxLxxxDxxxNlvLxxxxExxxxxxrxlgxvxIrGxxIxxixxxxxxxxxxx >c6ygbC_ MDILKLSDFIGNTLIVSLTEDRILVGSLVAVDAQMNLLLDHVEERMGSSSRMMGLVSVPRRSVKTIMIDKPVLQELT >UniRef50_C4M4I4(7-80:81) Small nuclear ribonucleo protein G, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4M4I4_ENTHI E=9e-05 s/c=0.65 id=22% cov=90% ----ELKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKhipIGMIMIRGNSILSVETIDPV----- >UniRef50_B6SLH9(33-115:120) Sm protein n=3 Tax=Magnoliophyta RepID=B6SLH9_MAIZE E=2e-15 s/c=1.00 id=20% cov=99% --VAKLRKLLFRRMLIGVNDGRYFHGLFHCIDKQGNIILQDAVEYRSarhcsppTEQRCLGLILIPAACRSSCQVDCSVEEKMS >UniRef50_Q8SRU9(8-85:102) U6 snRNA-ASSOCIATED SMALL RIBONUCLEOPROTEIN (Sm-LIKE PROTEIN) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRU9_ENCCU E=1e-09 s/c=0.82 id=23% cov=97% -DTRDYEKYLEQEVVVMLRDGRYLYGVMKSFDQFNSVTLDGVIERIfhdtRYAERRHELFIIRGENITMIGLSPPDVEE-- >UniRef50_Q8SRP0(1-71:71) U6-snRNA ASSOCIATED SMALL NUCLEAR RIBONUCLEOPROTEIN n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRP0_ENCCU E=1e-07 s/c=0.82 id=25% cov=82% --------FIGRTVKVKICDSSEFRGTSVAIDAYLNISLESAsYLQDGQEPRYYSSLFIKGSYIDHIALDA------- >UniRef50_UPI0000E4A622(38-112:156) PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A622 E=7e-10 s/c=0.87 id=23% cov=96% ---INLREVICTSRLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRMpeCYIRGSTIKYLRIPDEVIDMV- >UniRef50_Q4H1D9(5-71:80) Putative uncharacterized protein n=3 Tax=Leishmania RepID=Q4H1D9_LEIMA E=2e-07 s/c=0.84 id=16% cov=87% -----LESLLHRSVCCHLAHGEEYRGQLEALDGTFDVVLSQCTRSRAAPKQPAePLVFLRGENIIYIGFDES------ >UniRef50_Q6CEL3(15-73:527) YALI0B14773p n=1 Tax=Yarrowia lipolytica RepID=Q6CEL3_YARLI E=2e-06 s/c=0.91 id=24% cov=60% -----LGEISGKKVNVRVSTGTTFSGVLQSVDGYMSIVLENAEELVDDKV--------------------------- >UniRef50_D1IU23(95-165:170) Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) n=10 Tax=Eukaryota RepID=D1IU23_VITVI E=9e-06 s/c=0.72 id=23% cov=45% ----------NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--------------------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2778 * 1584 942 * * * * * * * * * 1 0 * * * * * * 3552 0 0 D 2 3336 * 1079 2965 * * * * * * * * 3270 * * 3618 3125 * * * 2 0 * * * * * * 3942 0 0 I 3 * * * * * 4335 * 1417 * 2847 2840 * * * * * 4139 2356 * 4464 3 0 * * * * * * 4779 0 0 L 4 3144 * * * * * * 2289 3270 1376 3875 * * * 3613 * * 4525 * * 4 0 * * * * * * 5218 0 0 K 5 * 5596 4411 2359 * 5296 3803 * 1917 * * 2486 * * 3945 4275 4825 5463 5477 * 5 0 * * * * * * 5483 0 0 L 6 * * * * * * * 3694 * 441 4340 * 5345 * * * 5657 3986 * 5097 6 0 * * * * * * 6442 0 0 S 7 3748 * 6771 2464 * 5401 3741 * 2576 4120 4658 3568 6412 3862 3749 3560 6560 5243 * 6527 7 31 * 5550 * * * * 6442 0 0 D 8 5213 5952 3229 2303 * 5636 6613 * 2521 * * 3394 6462 5592 3616 2456 4603 6531 * * 8 0 * * * * * 0 6441 0 1472 F 9 3662 5205 6261 6496 3094 6217 6946 4806 * 1790 5604 5698 * * * 3973 * 4695 3660 2435 9 0 * * * * 0 * 6418 0 1472 I 10 * 6224 * 5068 * * 6751 2203 4766 1411 3927 * * 4868 6315 6415 4799 2953 6221 6081 10 0 * * * * * * 6439 0 0 G 11 6911 6041 2769 4447 5720 1143 4382 * * * * 2525 * 5513 6857 4398 * * * 6305 11 0 * * * * * * 6414 0 0 N 12 4708 6359 6705 4255 6616 6641 4501 * 1719 5964 * 5873 6168 3402 2594 3416 3829 * * 4375 12 0 * * * * * * 6414 0 0 T 13 * 6567 5151 2796 * 6359 5582 4108 2916 4904 6920 4080 4499 3590 2338 4684 3376 5379 * 6855 13 0 * * * * * * 6414 0 0 L 14 * * * * 6308 * * 2408 * 2315 3864 * * * 6044 6319 6471 1079 * 5880 14 0 * * * * * * 6413 0 0 I 15 5548 5950 6994 5880 6068 * 5782 3552 4040 2821 * 6490 * 5163 2442 3324 3003 3124 6850 4442 15 0 * * * * * * 6413 0 0 V 16 * 4522 * * * * * 2133 * 3645 * * * * * * * 625 * * 16 0 * * * * * * 6417 0 0 S 17 6897 * 5708 2275 6886 6740 4070 3649 2996 5452 5620 4556 * 5350 3057 3937 3054 4097 * 6810 17 0 * * * * * * 6417 0 0 L 18 4948 6005 * * 5147 * * 3155 * 929 4094 * * 6624 * 5714 3078 3642 * * 18 0 * * * * * * 6417 0 0 T 19 4302 6161 4834 * * 6859 5871 6758 1821 5242 * 3002 6339 5069 2944 3437 2900 4930 * * 19 37 6016 6624 1284 763 * * 6417 1636 0 E 20 4845 * 1110 5211 * 3232 5947 6259 6338 * * 2269 * 6369 * 4276 5213 * 5128 * 20 8 7411 * 0 * 0 * 6413 1000 1000 D 21 7092 6649 3946 4979 * 581 * * 4814 * * 3099 * * 5994 4659 6641 * * * 21 0 * * * * * * 6417 0 0 R 22 5641 * 5689 3529 6352 6429 4707 5048 3471 4247 * * * 4300 1246 3957 3997 5178 * 6415 22 0 * * * * * * 6417 0 0 I 23 5054 5332 4880 2535 7055 * 5305 4152 4582 5773 4450 5803 * 4129 6301 3632 2911 2495 * 3945 23 0 * * * * * * 6417 0 0 L 24 6343 6376 * * 2384 * * 2742 * 2053 6764 * * * * * 6412 2947 * 2041 24 0 * * * * * * 6415 0 0 V 25 * * 5244 3559 6200 6553 5002 3461 3390 4879 5649 5238 * 4358 2613 4608 3589 2377 6810 5110 25 0 * * * * * * 6422 0 0 G 26 4780 * * * * 53 * * * * * * * * * * * * * * 26 0 * * * * * * 6422 0 0 S 27 4766 6938 5635 6047 5052 * 4819 2893 2918 4442 6249 6018 * 4542 3768 6680 1939 2990 * * 27 0 * * * * * * 6422 0 0 L 28 * * * * 2556 * * 4728 * 570 4264 * * * * 6176 6345 4627 * * 28 0 * * * * * * 6422 0 0 V 29 4713 6338 4865 3705 6323 6647 5935 2803 3150 3574 5048 7052 * 4186 3346 4248 3561 2928 * * 29 0 * * * * * * 6422 0 0 A 30 2098 2698 5458 4157 * 2204 * 6916 6753 5397 * 4864 * 5942 6452 2443 * 5981 * 6200 30 0 * * * * * * 6422 0 0 V 31 5235 4904 * * 1886 * * 3035 * 3597 * * * * * 5325 2994 2782 * 2564 31 0 * * * * * * 6422 0 0 D 32 * * 118 4732 * 6554 * * * * 5999 6107 * * * * * * * * 32 0 * * * * * * 6422 0 0 A 33 4652 6381 3632 3901 * 3511 4242 5780 2532 6830 * 3192 4020 2986 3778 4660 * 4309 * * 33 11 7069 * 0 * * * 6422 1000 0 Q 34 4746 * 3697 5416 2769 6349 2659 * 6381 4816 6869 4775 6875 3802 4470 4673 4267 5710 4968 2437 34 20 * 6200 * * * * 6422 0 0 M 35 3995 4196 * 6648 4431 3179 * 5957 5369 2954 1368 5668 6132 4760 6440 5178 6244 5169 * 6894 35 0 * * * * 0 * 6396 0 1000 N 36 * * 4438 * * * 6091 * * * * 141 * * * 4965 * * * * 36 0 * * * * * * 6422 0 0 L 37 * 5244 * * 5967 * * 1681 * 1375 3134 * * * * 6727 6550 2984 * * 37 0 * * * * * * 6422 0 0 L 38 4655 6521 * * 5025 * 5409 2259 5206 3046 6719 6052 * 4466 * 4918 3998 1424 * * 38 0 * * * * * * 6422 0 0 L 39 * * * * 5923 * * 4346 * 210 4278 * * * * * * 5769 * * 39 18 6305 * 0 * * * 6422 1000 0 D 40 3846 * 2647 2758 * 6583 5954 5245 3794 5668 * 4805 * 4982 5025 1817 3535 6639 * * 40 0 * * * * * * 6399 0 0 H 41 * * 1788 2752 * 5063 5121 * 4317 6533 * 1817 * 4445 5741 4061 6086 * * 5708 41 55 5227 6510 0 * * * 6399 1266 0 V 42 1515 2178 * * * * * * * * * * * * * 4382 2777 2088 * * 42 63 4556 * 2008 412 0 * 6403 2477 1000 E 43 6509 6413 4258 2379 6544 6634 5245 3586 3768 6347 * * * 5888 4218 4669 3615 2104 5678 3776 43 55 5136 6828 3259 159 * * 6493 2093 0 E 44 * 5219 4883 632 * * 5869 * 6290 3706 6368 * * 3967 4777 * 4196 5632 * * 44 0 * * * * 0 * 6492 0 1000 R 45 5259 * 5519 * 4104 * 6724 3729 4631 4005 6622 5148 6745 4315 2556 4711 2869 3915 6569 2423 45 141 3529 7316 2620 256 * * 6534 3756 0 M 46 4604 * 3915 4996 5853 5424 5733 3548 4514 4371 5673 3793 4281 5414 2552 3012 7135 3089 5357 6148 46 156 3290 * 2437 295 * 0 6531 3743 1000 G 47 3671 * 3049 4184 * 2768 4637 * 3190 * 6691 3337 5187 4959 3063 3744 3655 * * 7135 47 83 4155 * 2319 323 0 * 6531 2931 1000 S 48 4561 * 2628 2762 * 1917 * 5470 3963 * * 4550 3672 6117 * 5666 3899 4737 * 4749 48 60 4611 * 2731 235 * * 6503 2516 0 S 49 3954 * 3968 2174 6593 3372 6227 5499 2895 4556 * 4378 4944 4732 4199 3489 4521 5301 * * 49 173 3145 * 2588 262 * * 6464 3835 0 S 50 4690 6698 3964 3115 6173 6592 * 4444 2758 6275 * 3678 3472 3774 6388 3481 3145 3552 * * 50 193 3111 6727 1815 483 * * 6460 3930 0 R 51 5231 * 6788 5374 * 6547 * 5016 2452 4534 * 4711 6222 5095 946 4507 5882 6379 * * 51 81 4203 * 595 1566 * 0 6211 2933 1000 M 52 6505 5859 6731 3621 3521 6930 3919 6532 2545 6124 4832 3646 3926 4227 4299 3501 3675 4992 * 4636 52 51 4853 * 2451 291 * 0 6278 2082 1000 M 53 5699 4846 * * 4876 * 4436 3308 6140 1224 3662 * * * 5387 * * 3194 5202 3586 53 64 4524 * 1346 721 * 0 6278 2272 1000 G 54 5955 * 5530 4303 * 608 6357 * 4817 * * 4634 3732 6069 5211 4313 * * * * 54 0 * * * * 0 * 6278 0 1000 L 55 6174 * 4520 4747 6515 * * 6512 5014 1450 3214 4324 * 3412 4031 4169 3455 5209 * * 55 24 5940 * 1000 1000 * * 6282 1000 0 V 56 3612 3947 * * 5237 * 6329 2739 * 3476 5986 * * * * * 6625 983 * 4546 56 0 * * * * * * 6282 0 0 S 57 5805 * * * 2463 * * 3482 6179 2509 3163 * * * * 3862 5957 2089 * 3470 57 0 * * * * * * 6282 0 0 V 58 5521 5483 * * * * * 1010 * 3119 5986 * * * * * * 1607 * * 58 0 * * * * * * 6282 0 0 P 59 * * * * * * * * 4298 * * 6286 1795 * 672 5625 * * * * 59 0 * * * * * * 6265 0 0 R 60 5777 4405 * * 4939 434 * * 5024 5055 6096 * * * 4995 5352 * 5767 6338 * 60 0 * * * * * * 6265 0 0 R 61 4497 5970 2505 2873 6577 6104 6415 * 3682 * * 2892 4785 4510 4257 2310 5184 5965 * * 61 0 * * * * * * 6265 0 0 S 62 6623 5777 6514 6179 5452 * 2813 5914 5179 5020 * 1802 6104 3332 * 2265 3862 * * 5099 62 0 * * * * * * 6265 0 0 V 63 * * * * * * * 915 * 4568 * * * 5767 5777 * * 1356 * * 63 0 * * * * * * 6265 0 0 K 64 4295 * 5858 3613 * * * 3322 3068 3157 6039 6253 5928 5751 3303 3681 3691 2331 * * 64 0 * * * * * * 6244 0 0 T 65 4269 6082 6482 * 3286 6421 5130 5154 3059 3526 3858 * * * 6766 2298 3336 5299 * 2851 65 0 * * * * * * 6232 0 0 I 66 * 4859 * * 3705 * * 1179 * 3414 3446 * * * * * * 1934 * * 66 78 4250 * 0 * * * 6232 2058 0 M 67 3966 5815 5721 2027 * 4195 3909 4381 3348 4493 6057 4876 * 3373 4956 3352 4692 5174 * * 67 0 * * * * * * 6284 0 0 I 68 3293 5968 5775 5812 4669 * * 2506 * 1802 * * * 5733 5452 * 4527 1950 * * 68 0 * * * * * * 6186 0 0 D 69 4757 * 1564 2946 * * 5405 5969 * 3799 * 5424 2437 3672 4310 4413 * * * * 69 0 * * * * * * 6096 0 0 K 70 3306 5141 3163 2045 * 5219 5451 * 2947 4796 4553 3767 5098 5227 4397 4580 * 5564 * 5728 70 0 * * * * * * 5989 0 0 P 71 3269 * 2902 2903 * 4874 * * * 4950 * * 1577 5218 5302 2515 * * * * 71 0 * * * * * * 5729 0 0 V 72 4953 * 3555 2856 * * * 2939 5270 3940 * * 3639 4959 * 5009 3069 1941 * * 72 0 * * * * * * 5543 0 0 L 73 * 4248 3790 3311 * * 4886 2406 5018 2846 * * 5024 * * 4764 4744 2315 * 3715 73 0 * * * * * * 5428 0 0 Q 74 * * 3198 1689 * * 4369 * * * * 1327 * 4396 * 4478 4585 * * * 74 0 * * * * * * 5030 0 0 E 75 * * 4392 2204 * * * * 2009 * 4010 * 3943 2709 3231 3318 * * * * 75 0 * * * * * * 4881 0 0 L 76 * * * * * * * 1592 4184 2561 2980 * * 3953 * 4235 * 2327 * * 76 0 * * * * * * 4602 0 0 T 77 * * * * * * * * * * * * * * * 1939 436 * * * 77 0 * * 0 * * * 3309 0 0 //