HHsearch 1.5 NAME c6w2dd_ FAM FILE c6w2dd_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6w2dd_.a3m DATE Sat Jul 18 08:33:44 2020 LENG 77 match states, 77 columns in multiple alignment FILT 8 out of 12 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4711 2.1965 SEQ >ss_dssp CCCCCCCCCCCCSHHHHSCCCTHHHHHHCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTC >sa_dssp EEEEEEDEEDEDDEBEEEEEDECCEEBEECEDEEDEDEDBCDCBDDCCEEBDDDDEEDDECEEDEEEDEEDEDEEEE >ss_pred CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC >ss_conf 98656886022222012899869999987413899889988610000353455799999999850912789886419 >Consensus xxxRxxxPxiqxRLExdypxxplvxxxxxlxqnNmxxxxyxxaxrxYLVFLxAqxxYexYvxxxxGvxRkxxxqxxr >c6w2dd_ MARRLPKPTLQGRLEADFPDSPLLPKFQELNQNNLPNDVFREAQRSYLVFLTSQFCYEEYVQRTFGVPRRQRAIDKR >UniRef50_Q53CT7(5-73:169) JM133 n=3 Tax=Macacine herpesvirus 5 RepID=Q53CT7_9GAMA E=3e-08 s/c=0.87 id=38% cov=88% ---RVKEPIVQGRLEHDYPNHPLVAEMNNLPQGDMSPAQYAIAKRNYLVFLTAKHHYDMYTQKKNGILRK------- >UniRef50_Q8BEN7(3-78:153) ORF59 n=1 Tax=Callitrichine herpesvirus 3 RepID=Q8BEN7_9GAMA E=6e-26 s/c=1.55 id=55% cov=100% -GRRPPRPNVQSRLEADFPNHHLQTKFMELVQGNLSDKEYREAQAGYLTFLIAEHCYENYVQRMHGVLRRQVAQARR >UniRef50_Q01047(5-72:139) Capsid protein VP26 n=3 Tax=Rhadinovirus RepID=VP26_SHV21 E=2e-22 s/c=1.56 id=32% cov=90% ---RVTDPVVQGKLEESDSTHELVKRLEILPQNNMTPEEYTLMKRNYLVFLIAQYNFDQYIETTHGIKRKK------ >UniRef50_P90475(5-78:170) ORF 65 n=3 Tax=root RepID=P90475_HHV8 E=4e-22 s/c=1.42 id=32% cov=97% ---KVRDPVIQERLDHDYAHHPLVARMNTLDQGNMSQAEYLVQKRHYLVFLIAHHYYEAYLRRMGGIQRRDHLQTLR >UniRef50_Q99CX7(5-75:130) Capsid protein n=1 Tax=Bovine herpesvirus 4 RepID=Q99CX7_BHV4 E=1e-20 s/c=1.41 id=43% cov=94% ---RLRTPMIQGRLENDYPNNPLIATMTALPQNNMTSDQYAEVQRNYLVFLIAQQCYDRYLASKTGIRRKHHLQ--- >UniRef50_A1BM55(5-72:211) Capsid protein-like protein n=2 Tax=Ovine herpesvirus 2 RepID=A1BM55_9GAMA E=8e-07 s/c=0.80 id=35% cov=90% ---RPRLPRIHVRLEQDYPHDPRVQQLQVQVLNNPNYANNVRAPYTYLVFLTAQQTYDAYVRQARGVNKKK------ >UniRef50_O36415(5-72:252) Capsid protein n=1 Tax=Alcelaphine herpesvirus 1 (strain C500) (AIHV-1) (Malignant catarrhalfever virus) RepID=O36415_ALHV1 E=8e-05 s/c=0.71 id=33% cov=90% ---RPKLPRINLRLDAEYPNDPRVQQLHLQILNNPNYANNVRAPLSYLVFLTAQEMYEVFVRQARGVNKKR------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 A 2 1000 * * * * 1000 * * * * * * * * * * * * * * 2 0 * * * * * * 1364 0 0 R 3 * * * * * * * * * * * * * * 0 * * * * * 3 0 * * * * * * 1364 0 0 R 4 * * * * * * * * 3032 * * * * * 188 * * * * * 4 0 * * * * * * 2668 0 0 L 5 * * * * * * * * * 2031 * * 1416 * * * * 1394 * * 5 0 * * * * * * 2668 0 0 P 6 * * * * * * * * 2037 * * * 1968 * 1499 * 2765 * * * 6 0 * * * * * * 2668 0 0 K 7 * * 1892 3170 * * * * 2931 1997 * * * * 3007 * 3139 * * * 7 0 * * * * * * 2668 0 0 P 8 * * * * * * * * * * * * 0 * * * * * * * 8 0 * * * * * * 2668 0 0 T 9 * * * * * * * 3170 * * 3139 3007 * * 1997 * 2931 1892 * * 9 0 * * * * * * 2668 0 0 L 10 * * * * * * * 1040 * 2931 * * * * * * * 1386 * * 10 0 * * * * * * 2668 0 0 Q 11 * * * * * * 3084 * * * * 2916 * 416 * * * * * * 11 0 * * * * * * 2668 0 0 G 12 * * * 3032 * 992 * * * 2916 * * * * * 3007 * 3084 * * 12 0 * * * * * * 2668 0 0 R 13 * * * * * * * * 2765 * * * * * 230 * * * * * 13 0 * * * * * * 2668 0 0 L 14 * * * * * * * * * 0 * * * * * * * * * * 14 0 * * * * * * 2668 0 0 E 15 * * 1973 424 * * * * * * * * * * * * * * * * 15 0 * * * * * * 2668 0 0 A 16 1366 * * 2765 * * 2099 * * * * 3139 * 3084 * * * * * * 16 0 * * * * * * 2668 0 0 D 17 * * 473 2916 * * * * * * * * * * * 2765 * * * * 17 0 * * * * * * 2668 0 0 F 18 * * 2765 * 1968 * * * * * * * * * * * * * * 743 18 0 * * * * * * 2668 0 0 P 19 3032 * * * * * * * * * * * 453 * * 2765 * * * * 19 0 * * * * * * 2668 0 0 D 20 * * 2931 * * * 2057 * * * * 1054 * * * * 2765 * * * 20 0 * * * * * * 2668 0 0 S 21 * * 1997 * * * 986 * * * * 3139 * * * 2931 * * * * 21 0 * * * * * * 2668 0 0 P 22 * * * 2765 * * 3007 * * * * * 457 * * * * * * * 22 0 * * * * * * 2668 0 0 L 23 * * * * * * * * * 416 * * * * 1997 * * * * * 23 0 * * * * * * 2668 0 0 L 24 * * * * * * * 3139 * 2931 * * * 3007 * * * 664 * * 24 0 * * * * * * 2668 0 0 P 25 1527 * * * * * * * 2765 * * * 2931 1997 * * 3007 * * * 25 0 * * * * * * 2668 0 0 K 26 * * * 3170 * * * * 1968 * * * * 1997 1892 * 3139 * * * 26 0 * * * * * * 2668 0 0 F 27 * * * * 1968 * * * * 1331 1527 * * * * * * * * * 27 0 * * * * * * 2668 0 0 Q 28 * * * 2765 * * 2916 * * * 3007 2099 * 2005 * * 3139 * * * 28 0 * * * * * * 2668 0 0 E 29 3139 * * 1968 * * * 2765 * 2916 * 3170 * * * * 3032 3084 * * 29 0 * * * * * * 2668 0 0 L 30 * * * * * * * * * 416 * * * 1997 * * * * * * 30 0 * * * * * * 2668 0 0 N 31 * * 3032 * * * * 2916 * * * 2931 1428 * * * * 2045 * * 31 0 * * * * * * 2668 0 0 Q 32 * * * * * * * * * 1997 * * * 416 * * * * * * 32 0 * * * * * * 2668 0 0 N 33 * * * * * 1483 * * * * * 639 * * * * * * * * 33 0 * * * * * * 2668 0 0 N 34 * * 3170 * * * * * * * * 170 * * * * * * * * 34 0 * * * * * * 2668 0 0 L 35 * * * * * * * * * 1968 1017 * 1997 * * * * * * * 35 0 * * * * * * 2668 0 0 P 36 * * * * * * * * * * * 1997 2931 * * 1483 1940 * * * 36 0 * * * * * * 2668 0 0 N 37 * * 3007 * * * * * * * * 2931 1953 3032 * 3139 * * * 1997 37 0 * * * * * * 2668 0 0 D 38 1047 * 2031 2765 * * * * 3007 * * * * * * * * * * * 38 0 * * * * * * 2668 0 0 V 39 * * * 1344 * * * * * * * 1997 * 2154 * * * 2931 * * 39 0 * * * * * * 2668 0 0 F 40 * * * * 2931 * * * * * * 1997 * * * * * * * 693 40 0 * * * * * * 2668 0 0 R 41 2154 * * * * * * * * 3032 * * * * 1968 * 2765 1997 * * 41 0 * * * * * * 2668 0 0 E 42 * * * 1438 * * * 3170 * 2765 * * * * 1997 * * 3032 * * 42 0 * * * * * * 2668 0 0 A 43 696 * * * * * * * * * 2765 * * 3032 * * * 3139 * * 43 0 * * * * * * 2668 0 0 Q 44 * * * * * * * * 1394 * * * 1997 1438 * * * * * * 44 0 * * * * * * 2668 0 0 R 45 3007 * * * * * * * * 2916 * * * * 678 * * * * 3084 45 0 * * * * * * 2668 0 0 S 46 * * * * * 3007 3032 * * * * 1428 * * * 1923 3084 * * * 46 0 * * * * * * 2668 0 0 Y 47 * * * * * * * * * * * * * * * * * * * 0 47 0 * * * * * * 2668 0 0 L 48 * * * * * * * * * 0 * * * * * * * * * * 48 0 * * * * * * 2668 0 0 V 49 * * * * * * * * * * * * * * * * 3007 192 * * 49 0 * * * * * * 2668 0 0 F 50 * * * * 0 * * * * * * * * * * * * * * * 50 0 * * * * * * 2668 0 0 L 51 * * * * * * * * * 0 * * * * * * * * * * 51 0 * * * * * * 2668 0 0 T 52 * * * * * * * 979 * * * * * * * * 1021 * * * 52 0 * * * * * * 2668 0 0 S 53 203 * * * * * * * * * * * * * * 2931 * * * * 53 0 * * * * * * 2668 0 0 Q 54 * * * 3007 * * 3032 * 3170 * * * * 639 * * * * * * 54 0 * * * * * * 2668 0 0 F 55 * * * 2916 2931 * 1483 * * * * * * 2111 * * * * * 2765 55 0 * * * * * * 2668 0 0 C 56 * 1438 * * * * 3170 * * * 2916 2765 * * * * 3084 * * 3032 56 0 * * * * * * 2668 0 0 Y 57 * * * * 2765 * * * * * * * * * * * * * * 230 57 0 * * * * * * 2668 0 0 E 58 * * 1030 971 * * * * * * * * * * * * * * * * 58 0 * * * * * * 2668 0 0 E 59 2057 * * 2931 * * * * * * 3170 3007 * 2765 3139 * * 2916 * * 59 0 * * * * * * 2668 0 0 Y 60 * * * * 2916 * * * * * * * * * * * * * * 205 60 0 * * * * * * 2668 0 0 V 61 * * * * * * * 2765 * 2084 * * * * * * 3170 983 * * 61 0 * * * * * * 2668 0 0 Q 62 3139 * * 2765 * * * * * * * * * 1448 1424 * * * * * 62 0 * * * * * * 2668 0 0 R 63 * * * * * * * * 3170 * * * * 1997 1404 3139 2765 * * * 63 0 * * * * * * 2668 0 0 T 64 1997 * * * * * * * 2154 * 2019 * * * * * 1846 * * * 64 0 * * * * * * 2668 0 0 F 65 * * * * 2931 3032 1881 * * * * 3170 * * 1997 * 3139 * * * 65 0 * * * * * * 2668 0 0 G 66 * * * * * 0 * * * * * * * * * * * * * * 66 0 * * * * * * 2668 0 0 V 67 * * * * * * * 1017 * * * * * * * * * 983 * * 67 0 * * * * * * 2668 0 0 P 68 * * * * * * * * 2765 2086 * 1997 2931 3032 3139 * * * * * 68 0 * * * * * * 2668 0 0 R 69 * * * * * * * * 1997 * * * * * 416 * * * * * 69 0 * * * * * * 2668 0 0 R 70 * * * * * * * * 685 * * * * * 1404 * * * * * 70 0 * * * * * * 2668 0 0 Q 71 * * 2793 * * * 2876 * 1772 * * * * 1828 2784 * * * * * 71 0 * * * * * * 2638 0 0 R 72 * * * * * * 960 * * * * * * * 2014 * * 2069 * * 72 0 * * * * * * 2001 0 0 A 73 1041 * * * * * * * * 960 * * * * * * * * * * 73 0 * * * * * * 2001 0 0 I 74 * * * * * * * 2014 * * * * * 411 * * * * * * 74 0 * * * * * * 2001 0 0 D 75 1707 * 1600 * * * * * * * * * * * * * 1459 * * * 75 0 * * * * * * 1793 0 0 K 76 * * * * * * * * 1600 1459 * * * * 1707 * * * * * 76 0 * * * * * * 1793 0 0 R 77 * * * * * * * * * * * * * * 0 * * * * * 77 0 * * 0 * * * 1793 0 0 //