HHsearch 1.5 NAME c6v4xD_ FAM FILE c6v4xD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6v4xD_.a3m DATE Sat Feb 22 08:26:59 2020 LENG 106 match states, 106 columns in multiple alignment FILT 116 out of 178 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4082 -1.2616 SEQ >ss_dssp CCHHHHHTTCCCCCCCCTTTSSSCCTTSHHHHTTHHHHHTCEEEEEEECSSSEEEECCEEEEEECTTSCEEESSEEEEEECCCCEEEEEESSCCBCTTSE EEEEEC >sa_dssp EDEDDDDEEEEEEEEEDEEDDBDECEEDEBADBBCACEEECDACACBDCEEDDCACBCADBDDBCDEDCACACDADBDBDDEEDEDDDDCEECEBDBEDB DDCDCE >ss_pred CCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCEEEEEEEEEEEEEECEEEEEEEEEEEEEECCCCEEEEECCEEEECCCCE EEEEEC >ss_conf 9322023311121023123551145688178999998579829999825862538999999997021103873149999616622586757799933829 999749 >Consensus pexxxxxxxxxxxxxxnixxxmxxxxxxPlxxLxxxxxxxxrVxVxxRxxxxirGxxxGxLxaFDxhmNLVLxDvxExxxxxxxxxxrxlgxixiRGdnV vlIsxA >c6v4xD_ PERIQRLRRLMVKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLRGVCTGFLVAFDKFWNMALTDVDETYRKPQQVFTRHINQIFIRGENV LLVHLA >UniRef50_Q9VLV5(16-87:94) Probable small nuclear ribonucleoprotein E n=19 Tax=Eukaryota RepID=RUXE_DROME E=4e-06 s/c=0.73 id=30% cov=69% ----------------------------PINLIFRYLQNRSRVQVWLYENISLR--IEGHIVGFDEYMNLVLDDAEEVYVKTRQ--RRNLGRIMLKGDNI TLIQ-- >UniRef50_Q9Y4Y9(14-82:91) U6 snRNA-associated Sm-like protein LSm5 n=68 Tax=Eukaryota RepID=LSM5_HUMAN E=0.0001 s/c=0.69 id=31% cov=66% ----------------------------PLELVDKCI--GSRIHIVMKSDKEIVGT----LLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI TML--- >UniRef50_A8PYV0(77-210:220) Sm protein n=1 Tax=Brugia malayi RepID=A8PYV0_BRUMA E=9e-12 s/c=0.53 id=28% cov=75% ----------------------------PMKRLEECMEQGHPVRISLRGRNSVNSSIQAKIIAFDKHWNLLIRDGDESFNPPMNMKRrttksihavgpyq ysesqcedregktktlwqRHLPCSLIRGDDIVLISVS >UniRef50_Q5CLJ8(23-72:98) U6 snRNA-associated sm-like protein n=2 Tax=Cryptosporidium RepID=Q5CLJ8_CRYHO E=0.0004 s/c=0.91 id=28% cov=43% ----------------------------------------------------------GNLVGFDQLTNIVLQNCSEkiYNKDLNKVETVSMESLVLRGD CIGMV--- >UniRef50_A8BLX8(22-120:124) Small nuclear ribonucleoprotein Sm D2, putative n=2 Tax=Giardia intestinalis RepID=A8BLX8_GIALA E=1e-14 s/c=0.82 id=26% cov=69% ---------------------------SPYAFFDEVLALRKPVLVQLRSGR----FITGVLKAYDRHLNLVFSEATETWEENGIEYTEERKNFMLRGDNV IMV--- >UniRef50_O14036(17-109:115) Probable small nuclear ribonucleoprotein Sm D2 n=8 Tax=Dikarya RepID=SMD2_SCHPO E=4e-10 s/c=0.71 id=31% cov=71% -------------------------SAGPLSVLQQAVKNHDQVLINCRNNKKLLARV----KAFDRHSNMVLENVKEMWTEKKRtasgkkgkaiNKDRFI SKMFLRGDGVVLV--- >UniRef50_C4Q3X2(555-650:664) Family S9 non-peptidase homologue (S09 family) n=7 Tax=Eukaryota RepID=C4Q3X2_SCHMA E=5e-10 s/c=0.68 id=29% cov=75% ------------------LARMPTGDKQPekhkkesIIDLNKYID--KRIRVKFSGGRE----AVGILKGCDNLQNMVIDCTTEFLRDPDDphrltEDTR ELALVVCRGPSVELV--- >UniRef50_Q9GYQ8(107-178:223) Putative uncharacterized protein n=2 Tax=Caenorhabditis RepID=Q9GYQ8_CAEEL E=7e-06 s/c=0.72 id=32% cov=44% -----------------------------------------RIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTETVlhgRKAQKEFT---------- --------- >UniRef50_Q6FYB6(16-79:79) U6 snRNA-associated Sm-like protein LSm6 n=3 Tax=Saccharomycetaceae RepID=LSM6_CANGA E=1e-05 s/c=0.79 id=30% cov=47% ---------------------------------------------------------SGVLESIDGFMNVALSETREHYEHPNNNlLKKYASDVFLRGTQ VMYISEA # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 2503 0 0 E 2 * * * 273 * * 2534 * * * * * * * * * * * * * 2 0 * * * * * * 2654 0 0 R 3 * * * * * * * * * 2533 2892 * * 1109 2128 * * * * * 3 0 * * * * * * 2654 0 0 I 4 * * * * * 2827 * 1316 * * 1631 * * * * * * 2892 * * 4 0 * * * * * * 2654 0 0 Q 5 * * 2533 3101 * * * * * * * * 1109 2018 * * * * * * 5 0 * * * * * * 2654 0 0 R 6 * * * * * 2892 * * 2533 2736 2534 * * * 2128 * * 2827 * * 6 0 * * * * * * 2654 0 0 L 7 * * * * * * * * * 1569 * * 2926 * * * 1900 2743 * 3132 7 0 * * * * * * 2812 0 0 R 8 * * * 2749 * 2926 * * 3346 * * * * * 1590 2743 * 2841 * * 8 0 * * * * * * 2812 0 0 R 9 * * * * * * * * 1835 * * * * 2071 2231 * 2743 3069 * * 9 175 * 3132 * * * * 2812 0 0 L 10 * * * * * * * * * 2139 2645 * * 2769 1735 * * 2593 * * 10 251 2645 * 2000 415 * 0 2722 1000 1000 M 11 * * * * * * * * 2645 * 2139 2593 * * 2769 2789 * 2682 * * 11 0 * * * * 0 * 2722 0 1000 V 12 * * * 2749 2841 * * 3069 1831 3346 * * * * * * 3132 3336 * * 12 149 3346 * 3807 107 * * 2812 1000 0 K 13 * * * * * * * * 581 * * * * * 1592 * * * * * 13 0 * * * * * * 2812 0 0 A 14 2341 * * * 3132 2926 1896 * * * * * * * 2841 * 2749 * * * 14 0 * * * * * * 2812 0 0 P 15 * * * * * * * * * 2749 * * 1604 1924 2841 * 3069 * * * 15 204 * 2926 * * * * 2812 0 0 R 16 * * * * * * * * 2462 * * * * * 545 2906 * * * * 16 0 * * * * 0 * 2669 0 1000 N 17 * * * * * * * * * * * 301 * * * * 2410 * * * 17 0 * * * * * * 3046 0 0 V 18 * * * * * * * 1113 3710 * * * * * * * * 1116 * * 18 0 * * * * * * 3046 0 0 L 19 * * * * 1417 * * * * 1057 * * * * * * * * 3722 3855 19 0 * * * * * * 3464 0 0 T 20 2534 * * 3839 * * * 3939 * * * * * * * 1862 1261 * * * 20 0 * * * * * * 3464 0 0 R 21 * * * * 3722 * * * 2965 * * * * 3733 1087 3670 * * * 2542 21 97 * 3938 * * * * 3464 0 0 M 22 * * * * * * * 3798 * 3873 362 * * * * * * 3608 * * 22 185 * 3052 * * * 0 3357 0 1000 P 23 * * 3506 1459 * * * 3469 * * * * 1660 4088 * 3599 * * * * 23 0 * * * * 1203 822 3257 0 1783 L 24 3414 * * 2989 * * * * 2606 2262 * 3714 * * 3536 3811 2524 * * * 24 0 * * * * * 0 3248 0 1396 H 25 2823 * * * 3714 2385 3061 3672 3811 3464 * * 3495 * * * 4157 3536 * * 25 0 * * * * * 0 3248 0 1396 E 26 3429 * 3165 2987 3905 3802 * * * * * 3946 * * * 1988 * 2223 * * 26 97 * 3946 * * * 0 3427 0 1396 G 27 3318 * * 2955 * 1098 * * 1931 * * * * * * * * 4590 * * 27 582 3794 1943 1000 1000 1579 588 3317 1000 1668 S 28 * * * 3836 * 1056 * * 3818 * * * * 3224 * 1883 * * * * 28 0 * * * * 235 2735 3540 0 2452 P 29 * * * * * * * * * * * * 0 * * * * * * * 29 71 4377 * 2807 222 * 0 4491 1000 1000 L 30 * * * * 2962 * * 3229 * 718 3032 * * * * * * * * 4848 30 0 * * * * 0 * 4491 0 1000 G 31 2368 * 3547 3503 * 2581 * 4397 4279 * * 3733 * * 3936 2146 * * * * 31 30 * 5599 * * * * 4460 0 0 E 32 * * 4393 4116 4134 * * * * 1437 5452 * 4797 5339 3326 5033 * 1973 * * 32 0 * * * * * 0 4453 0 1000 L 33 * * * * 4894 * * 2870 * 457 4426 * * * * * * 4191 * * 33 0 * * * * * 0 4453 0 1000 H 34 5409 * 3124 3843 4160 * 3848 * 4003 * * 2934 * 3827 3162 * 3627 3324 5033 3645 34 0 * * * * * 0 4453 0 1000 R 35 5827 * 5560 2989 * * 4470 * 1595 4479 * 5481 * 3295 2373 3780 5374 * * * 35 0 * * * * * 0 4453 0 1000 C 36 1702 1694 * * 4222 * * 4385 * * * * * * * 4139 5481 4894 3777 3376 36 41 * 5149 * * * 0 4453 0 1000 I 37 * 5398 * * 3244 * * 2489 * 2006 2471 * * * 4479 * 5075 2617 * 5282 37 188 4458 3709 2894 208 * 0 4449 1218 1396 R 38 4131 * 3086 2273 * * * * 3465 4390 4518 3249 * 2912 3409 5728 * 5379 * 4029 38 186 5728 3293 3000 193 1247 789 4360 1000 2277 E 39 5306 * 3189 1407 * 5217 5362 * 4935 4671 * 2473 * 4082 5416 3592 5693 * * * 39 0 * * * * 1069 934 4221 0 2263 G 40 * * * * * 2059 5531 * 2208 * * 4219 * 4266 1330 * 5752 * * * 40 32 * 5505 * * 0 * 4472 0 1752 V 41 3200 5499 5580 4272 5996 * 4313 4511 2260 * 4500 5426 * 4697 4252 2891 3013 4675 * 5541 41 0 * * * * * 0 4496 0 1000 K 42 * * * * * * * * 4002 * 5295 * 2828 3183 641 5657 * * * * 42 0 * * * * 0 * 4753 0 1000 V 43 * 5151 * * * * * 1483 * 4092 * * * * * * * 848 * * 43 0 * * * * * * 4616 0 0 N 44 * * * 4535 3590 4739 4551 5933 3020 2514 5334 6077 * 3602 1653 * * * 5387 6056 44 0 * * * * * * 4616 0 0 V 45 * * * * * * * 1905 * * * * * * * * * 448 * * 45 0 * * * * * * 4772 0 0 H 46 3986 5627 * 4660 5220 * 4145 5374 3259 * 3369 3928 * 4457 3676 3940 * 2682 3529 3808 46 0 * * * * * * 4772 0 0 I 47 * 3624 * * 4608 * * 2276 * 1780 4017 * * * * 5396 2315 3412 * * 47 0 * * * * * * 4772 0 0 R 48 * * * * 5533 * * * 2818 * * 5130 * 5627 462 4608 * * * 5604 48 0 * * * * * * 4772 0 0 T 49 * * 3948 4568 5396 2050 3695 * 3375 * * 2887 * * 4579 2586 3620 * * 5090 49 0 * * * * * * 4772 0 0 F 50 3151 * 4772 3793 4190 2869 4492 * * 5405 * 2585 5686 4575 3085 4787 4475 3812 * 5594 50 0 * * * * * * 4772 0 0 K 51 * 5220 4852 * * 5198 3293 4000 2122 * * 2809 * * 1776 3975 * 5735 * * 51 62 * 4573 * * * * 4772 0 0 G 52 5342 4779 5392 2253 * 2062 * * 2588 * * * * * 4449 2330 5885 * * 4718 52 127 * 3571 * * * 0 4602 0 1497 L 53 * * * * 4482 * * 1707 * 1530 4881 * 5258 * * * * 2042 * * 53 80 * 4208 * * 1513 623 4450 0 2294 R 54 * * 4325 * * 3926 4544 * 5673 3783 * 4217 * * 803 * 5088 5239 * 3910 54 181 * 3082 * * * 0 4440 0 2582 G 55 4218 * * * * 355 * * * * * * * * 4192 3190 * * * * 55 31 * 5553 * * 2275 334 4431 0 3121 V 56 * * * * 4430 * 4131 3030 4466 * 5178 5638 * * 2684 2929 2799 2149 * 5317 56 239 * 2713 * * 1025 976 4278 0 2891 C 57 3174 2700 * * 4586 * * 2558 * 2147 3567 * * * * * * 2226 * * 57 82 * 4181 * * 2268 336 4612 0 3138 T 58 * 5763 * 2199 * * * 6235 * * * 5643 * 4452 4342 2228 1740 3028 * * 58 0 * * * * 3078 182 4522 0 2831 G 59 3545 * * * * 129 * * * * * * * * * * * * * * 59 34 * 5405 * * 3164 171 5867 0 2750 F 60 * 7150 * 5186 3321 * 7054 2978 3235 5109 5829 4277 * 5397 4455 7401 3105 2429 * 2742 60 0 * * * * 829 1194 5707 0 3093 L 61 * * * * 5138 * * 3063 * 433 5528 * 6150 * * * * 3724 * * 61 0 * * * * 1302 751 5846 0 2335 V 62 4736 * 6959 4631 * * 5284 2733 2657 3082 5520 * * 6546 2401 6365 4999 2418 * 6779 62 0 * * * * * 0 5488 0 1797 A 63 1293 5882 * 6037 6363 1797 * * * 6769 * 5461 * * * 2525 4489 6713 * * 63 0 * * * * 0 * 5488 0 1797 F 64 * 5642 * * 732 * 6258 4548 * 4852 * * * * * * * 3991 6023 2257 64 0 * * * * * * 5492 0 0 D 65 * * 0 * * * * * * * * * * * * * * * * * 65 0 * * * * * * 5496 0 0 K 66 5648 * 4818 2714 * 3739 * 7284 1934 6986 * 4187 5168 2324 3875 4820 5405 4975 * * 66 0 * * * * * * 5496 0 0 F 67 * 6461 * * 2053 * 1281 6260 6326 3907 * * * 5080 * 6669 * * * 2290 67 0 * * * * * * 5496 0 0 W 68 4084 4628 * * 3424 5953 * 6390 * 3010 1407 * * 5650 * 4294 6698 4545 3040 4911 68 0 * * * * * * 5496 0 0 N 69 * * * * * * * * * * * 0 * * * * * * * * 69 0 * * * * * * 5496 0 0 M 70 * * * * 6067 * * 2765 * 1073 2008 * * * * * * 3132 * * 70 0 * * * * * * 5496 0 0 A 71 3510 * * * * * 6639 2544 * 3168 5555 * * 4896 6298 * 6390 889 * * 71 0 * * * * * * 5496 0 0 L 72 * * * * 5198 * * 3611 * 288 4042 * * * * * * 6470 * * 72 0 * * * * * * 5496 0 0 T 73 5633 6787 2481 2301 * 4167 6453 6519 4507 4997 7311 5382 * 4009 3368 2533 4319 5428 * * 73 0 * * * * * * 5496 0 0 D 74 * 5650 767 3082 * 5953 6422 * 4905 * * 2534 * 5085 * 6531 * * * * 74 0 * * * * * * 5496 0 0 V 75 2052 3238 * * * 4862 * * * * * * * * * 4615 2368 1381 * * 75 9 7391 * 3322 152 * * 5496 1000 0 D 76 * 5878 3685 1860 5840 * 5654 3497 3675 6426 * 5918 * 5858 4708 4855 2668 3104 * 4890 76 10 * 7180 * * * * 5496 0 0 E 77 6295 * * 97 * * * * * * * * * 4808 * 5899 * * * * 77 120 4265 5181 3504 133 * 0 5497 2610 1000 T 78 5595 * 6790 5500 4111 * 6378 3159 4583 4588 5063 6378 * 7134 3441 4162 2353 2994 4873 2937 78 127 5711 3946 3241 161 * 0 5470 1699 1925 Y 79 4964 * 5150 6443 3665 * 4790 2709 6554 4160 5831 4808 4953 6678 4363 3929 4450 4542 3178 2433 79 164 3715 4987 3278 157 * 0 5425 2835 2903 R 80 6465 7495 4879 4402 4542 6424 5910 4881 2543 * 5030 3835 4512 4651 2576 3569 3659 4698 * 3812 80 153 3432 6964 4329 74 2125 376 5419 2654 3059 K 81 4171 * 2524 2607 * 4781 5520 6635 2215 5321 6215 * 4106 5632 3636 6474 4834 3880 * 6450 81 118 4352 5093 2471 287 1449 658 5437 2251 2885 P 82 4271 * 3714 4292 5096 3237 * * 2775 4726 * 3586 2202 5853 4408 5340 4025 4303 * * 82 62 4969 6585 5440 34 978 1022 5360 1925 2980 Q 83 4992 * 3511 3141 * 3189 5614 4749 3249 4406 4598 2932 5757 3012 4828 7021 4502 4928 * 6238 83 44 5051 * 3885 101 711 1362 5366 2161 2610 Q 84 4350 4926 3717 3276 * 3298 6430 5106 2927 5363 4829 3561 5181 3459 4062 3581 * 4570 * 5902 84 141 3750 5754 3825 106 934 1069 5392 2847 1621 V 85 6064 * 5342 2547 4239 5072 6560 3964 3632 6808 4284 3975 6453 5623 4306 4274 4487 2392 * 4102 85 120 4404 4931 4498 65 * 0 5396 2455 1949 F 86 4029 4094 5629 3044 3843 * * 3570 2477 4430 5316 * 7058 7226 3936 3783 3673 3462 * 6346 86 144 4389 4401 4460 67 1453 656 5367 2286 2748 T 87 6485 * 3348 2949 * 7063 * 5202 2776 6329 * 6487 5738 5228 2439 4162 2236 4084 * * 87 124 4424 4800 4004 93 2720 237 5347 2397 2931 R 88 5227 * * 3916 * 4941 * 4914 3279 4850 * 4745 * 5208 829 * 4960 4493 * * 88 7 * 7747 * * 1104 903 5273 0 3166 H 89 5800 6820 4997 3635 4275 4964 2974 6821 3361 6966 * 3975 4407 4687 3292 3564 3819 5371 * 3251 89 18 * 6322 * * 628 1502 5332 0 2656 I 90 5842 * * * 5629 * 5098 2293 * 1234 3582 6792 * 6499 4822 6608 5583 3461 * 4538 90 0 * * * * 0 * 5371 0 1876 N 91 5113 * 4372 4495 * 919 * * 3419 * * 4180 3111 6662 5571 4207 * * * * 91 0 * * * * * * 5376 0 0 Q 92 6490 4896 4024 4351 5288 * * 6095 3296 2151 3721 4804 * 2683 3932 3954 3997 6808 * 6853 92 0 * * * * * * 5376 0 0 I 93 5639 4956 * * 4314 * * 2175 * 2494 2840 6670 * * * 5554 6147 1867 * 4662 93 0 * * * * * * 5376 0 0 F 94 * * * * 1649 * 5596 3064 * 1937 5119 * * * * * * 2218 * 4797 94 0 * * * * * * 5376 0 0 I 95 4594 5656 * * 6408 * * 1621 * 1639 5784 * * * * * * 1928 * * 95 0 * * * * * * 5376 0 0 R 96 * * * * * * * * 4067 * * 5050 * * 203 5607 * 5596 * * 96 0 * * * * * * 5376 0 0 G 97 * 3645 * * * 145 * * * * * * * * * 6005 * * * * 97 0 * * * * * * 5376 0 0 E 98 * 5775 1340 2236 * 6287 * * * 6470 * 2218 4464 * * 6146 3718 * * * 98 0 * * * * * * 5333 0 0 N 99 5138 5643 5260 6131 * 4871 5596 * 6679 5737 5437 1124 * 3398 6221 2450 4195 * * * 99 0 * * * * * * 5337 0 0 V 100 * * * * * * * 1535 * 4840 5551 * * * * * * 740 * * 100 0 * * * * * * 5337 0 0 L 101 4144 * * 4596 * 4757 6015 2470 5893 2462 6210 * * * * 5768 3960 1416 * * 101 0 * * * * * * 5320 0 0 L 102 * 5995 * * 4082 * 6178 3892 * 1178 3385 * * * * 3806 3489 4534 * 3282 102 0 * * * * * * 5244 0 0 V 103 * * * * * * * 1206 * 2932 3940 * * * * * * 1433 * * 103 0 * * * * * * 5191 0 0 H 104 3635 * 4682 * * * 3266 * 4846 * * 4239 * 3947 4974 1270 3952 * * 3148 104 0 * * * * * * 4443 0 0 L 105 3854 * * 3923 * * * 2616 * 2068 * * 2478 * 3594 4551 * 2660 * * 105 0 * * * * * * 4080 0 0 A 106 147 * * * * * * * * * * * * * * 3365 * * * * 106 0 * * 0 * * * 3630 0 0 //