HHsearch 1.5 NAME c6ujuC_ FAM FILE c6ujuC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6ujuC_.a3m DATE Sat May 16 08:31:19 2020 LENG 90 match states, 90 columns in multiple alignment FILT 32 out of 36 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4540 0.7199 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSSCCCCTHHHHHHTHHHHHHHHHHHHHHHHTSSSTTTHHHHHHHHHHHHHHHTCC >sa_dssp EEEEEEDDDEEDDDDDEDEEEDDDDDDEBCECDECEDEEEEEDEEEBEECEDCDEDCEEDDEDDEBEEEEEECEDDDEEEEEDEEEEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 988999999999999999999999999999984024888866732002316629999999999999999999999999999999994279 >Consensus xWlxyikixixiVxgiIgLRIvxxvxxivxrxRqGYsPLsxqdRxRxxxlxxGFlaliWxDLrxLxxwxYxxlrxlxxxixrxxxxLgxx >c6ujuC_ NWLWYIRIFIIIVGSLIGLRIVFAVLSLVNRVRQGYSPLSERDRDRSIRLVNGSLALIWDDLRSLSLFSYHRLRDLLLIVTRIVELLGRR >UniRef50_Q699W2(680-785:870) Env protein n=5 Tax=Primate lentivirus group RepID=Q699W2_SIVCZ E=6e-22 s/c=0.99 id=36% cov=97% -WFWWIRLVVYIIAALILLRIAMFGVNIGSKLCRGYSPLQtltpkeeevlrlaeeggrsgGDGRARWTALPRGFFSLIWEDLQQLLTWLYQTFRNCIWLI RRGFELL--- >UniRef50_P22380(731-772:821) Transmembrane protein gp41 n=133 Tax=Simian immunodeficiency virus RepID=ENV_SIVGB E=0.0009 s/c=1.07 id=37% cov=48% -WVQYLKWGVFLVLGIIGLRILLALWNTISRFRQGYRPVFSQD----------------------------------------------- >UniRef50_Q87594(24-63:138) Envelope glycoprotein (Fragment) n=3 Tax=Simian immunodeficiency virus RepID=Q87594_SIVCZ E=0.0002 s/c=1.18 id=40% cov=44% -WFGWLKIGFLVIAGIIGLRIVFIVIGLLRKFKAGYAPLS-------------------------------------------------- >UniRef50_Q8AIH5(679-788:871) Transmembrane protein gp41 n=57 Tax=Primate lentivirus group RepID=ENV_SIVTN E=5e-25 s/c=1.05 id=38% cov=99% -WLWYIKIAIIIVAGLVGLRILMFIVNVVKQVRQGYTPLFSQiptqaeqdpeqpggiagggggrDNIRWTPSPAGFFSIVWEDLRNLLIWIYQTFQNFIW ILWISLQALKQ- >UniRef50_Q79670(691-799:876) Transmembrane protein gp41 n=384 Tax=Primate lentivirus group RepID=ENV_HV1MV E=7e-23 s/c=0.99 id=47% cov=98% -WLWYIKIAIIIVGALIGIRVIMIILNLVKNIRQGYQPLSLQipvphrqeaetpgrtgeeggegDRPKWTALPPGFLQQLYTDLRTIILWTYHLLSNLIS GIRRLIDYLG-- >UniRef50_Q7ZJ26(116-159:241) Protein Tat n=4 Tax=Primate lentivirus group RepID=Q7ZJ26_SIVCZ E=4e-07 s/c=1.27 id=35% cov=48% -------------------------------------------RNRSTVYARGFLTIIWTDCRDLIVWTFQLLRDSGLTIYRSLQ----- >UniRef50_Q699U6(675-715:840) Env protein n=3 Tax=Primate lentivirus group RepID=Q699U6_SIVCZ E=4e-06 s/c=1.28 id=26% cov=47% -WFQYLKIGFFAIAAIVILRVLSFAWGIVRNMLGGYSPLLQK------------------------------------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 920 * * * 1085 * * * * 1 0 * * * * * * 1744 0 0 W 2 * * * * * * * * * * * * * * * * * * 0 * 2 0 * * * * * * 2716 0 0 L 3 * * * * 1627 * * 4400 * 1073 * * * * * * * 2702 * * 3 0 * * * * * * 2716 0 0 W 4 * * * * * 3088 * * 3418 * * 4156 * 2971 3490 * * * 954 * 4 0 * * * * * * 2716 0 0 Y 5 * * * * * * * 4156 * * * * * * * * * * 1939 550 5 0 * * * * * * 2716 0 0 I 6 * * * * * * * 616 * 1706 4614 * * * * * * * * * 6 0 * * * * * * 2716 0 0 R 7 * * * * * * * * 554 * * * * 2873 2455 * * * * * 7 0 * * * * * * 2716 0 0 I 8 * * * * * * * 543 * 3105 * * * * * * * * 3973 2905 8 0 * * * * * * 2724 0 0 F 9 1839 * * * 1847 1520 * * * * * * * * * * * 3413 * * 9 0 * * * * * * 2724 0 0 I 10 * 4886 * * 2724 * * 1278 * 5146 * * * * * * * 1418 * * 10 0 * * * * * * 2724 0 0 I 11 * * * * 2993 * 4462 2272 * 2881 1513 * * * * * * * * 2881 11 0 * * * * * * 2724 0 0 I 12 3471 * 4179 * * * * 1030 * 3973 * * * * * * * 1732 * * 12 0 * * * * * * 2724 0 0 V 13 * * * * * * * 1692 * * * * * * * * * 534 * * 13 0 * * * * * * 2724 0 0 G 14 1178 * * * * 1710 * * * 2598 * * * * * * * 3519 * * 14 0 * * * * * * 2724 0 0 S 15 2270 * * * * 526 * * * * * * * * * 3347 * * * * 15 0 * * * * * * 2724 0 0 L 16 * * * * * * * 1093 * 1044 * * * * * * * 4433 * * 16 0 * * * * * * 2724 0 0 I 17 * * * * * * * 517 * * * * * * * * * 1732 * * 17 0 * * * * * * 2724 0 0 G 18 4462 * * * * 736 * 2829 * 2928 * * * * * * 4578 4637 * * 18 0 * * * * * * 2724 0 0 L 19 3649 * * * 4886 * * 4098 * 329 * * * * * * * 4960 * * 19 0 * * * * * * 2724 0 0 R 20 * * * * * * * * * * * * * * 0 * * * * * 20 0 * * * * * * 2724 0 0 I 21 * * * * * * * 420 * 3490 * * * * * * * 2612 * * 21 58 4660 * 0 * * * 2724 1000 0 V 22 3322 * * * * * * 2388 * 1832 * * * * * * * 1224 * * 22 0 * * * * * * 2724 0 0 F 23 * 5485 * * 1846 * * 2905 * 3425 1615 * * * * 3458 * * * 4179 23 0 * * * * * * 2724 0 0 A 24 2204 * * * 1967 * * 2886 * * * * * * * * 2779 3845 * 2502 24 0 * * * * * * 2724 0 0 V 25 4013 * * * * 4194 * 1919 * 3184 * * * * * * * 975 * * 25 0 * * * * * * 2724 0 0 L 26 * * * * 5146 * * 1937 * 1827 * * * * * * * 2012 2993 4179 26 0 * * * * * * 2724 0 0 S 27 * * * * * 2943 * * * * * 1607 * 2905 * 1399 5103 * * * 27 0 * * * * * * 2724 0 0 L 28 * 3563 * * * * * 1532 * 1946 3504 * * * * * 3973 2660 * * 28 0 * * * * * * 2724 0 0 V 29 * * * * * 4194 * 2757 * 1503 * * * * * * * 1170 * * 29 0 * * * * * * 2724 0 0 N 30 2937 * * * * 4805 * * 2891 * * 2422 * * 1903 2030 * * * * 30 0 * * * * * * 2724 0 0 R 31 * * * * * * * * 2096 4540 * 3019 * 5039 812 * * * * * 31 0 * * * * * * 2724 0 0 V 32 * * * * 2164 * * 4025 * 1939 4013 * * * * * * 1348 * * 32 0 * * * * * * 2724 0 0 R 33 * 3413 * * * * * * 3748 4013 * * * * 378 * * * * * 33 0 * * * * * * 2724 0 0 Q 34 3133 * * * * 4013 * * 3519 * * * * 637 3413 * * * * * 34 0 * * * * * * 2724 0 0 G 35 * * * * * 0 * * * * * * * * * * * * * * 35 0 * * * * * * 2724 0 0 Y 36 * * * * * * * * * * * * * * * * * * * 0 36 0 * * * * * * 2724 0 0 S 37 3748 * * * * 4660 5087 * * 4540 * * * 4025 2342 931 5039 * * * 37 0 * * * * * * 2724 0 0 P 38 * * * * * * * * * 4805 * * 53 * * * * * * * 38 0 * * * * * * 2724 0 0 L 39 * * * * * * * * * 125 * * * * * * * 3596 * * 39 0 * * * * * * 2579 0 0 S 40 * * * * 3104 * * * * 3117 * * 4204 3928 * 625 * * * * 40 311 2369 * 4430 69 * * 2579 1889 0 E 41 * * * 3264 1880 3112 * * * 3659 * * 2667 2768 * 2999 * * * * 41 126 3582 * 4412 69 * * 2566 1485 0 R 42 * * 3689 * * 3963 * * 2777 * * * * 592 4354 * * * * * 42 825 1200 * 4459 67 * * 2566 2315 0 D 43 * * 666 * * 2983 * 4060 * * * 3788 * * * 4144 4202 * * * 43 86 4114 * 4459 67 * * 2620 1124 0 R 44 * * * * * * * * 5192 * * 3593 4082 * 268 * * * * * 44 0 * * * * * * 2571 0 0 D 45 3751 * 1499 * * 4550 * 3100 * 3736 * 3401 4132 * * 2967 5219 5006 * * 45 88 4082 * 4459 67 * * 2571 1000 0 R 46 * * * * * * * * 2921 * * * * * 204 * * * * * 46 0 * * * * * * 2571 0 0 S 47 * * * * * * * * * * * * * * * 1028 * * 972 * 47 0 * * * * * * 2571 0 0 I 48 5108 * * * * 4260 * 2142 * * * * * * 2377 5224 2193 2480 3736 * 48 0 * * * * * * 2571 0 0 R 49 2349 * * * * 4249 * * * * * * 2862 3736 1224 * 3737 4812 * * 49 0 * * * * * * 2571 0 0 L 50 * * * * * * * * * 746 * * * * * 2428 * * * 2198 50 0 * * * * * * 2571 0 0 V 51 4812 * * * * * * * * 4192 * * 1169 3946 * * * 1322 * * 51 0 * * * * * * 2571 0 0 N 52 4273 * 4217 4240 * * 3946 * * * * 3169 4132 2899 2435 2435 4265 4249 * * 52 0 * * * * * * 2571 0 0 G 53 * * * * * 0 * * * * * * * * * * * * * * 53 0 * * * * * * 2571 0 0 S 54 * 4240 * * 162 * * * * * * * * * * 4228 * * * * 54 0 * * * * * * 2571 0 0 L 55 * * * * 1641 * * * * 620 * * * * * 5116 * * * * 55 0 * * * * * * 2571 0 0 A 56 1120 * * * * * * * * * * * 3159 3189 * 1967 3997 * * * 56 0 * * * * * * 2571 0 0 L 57 * * * * * * * 1652 * 679 * * * 4132 * * * * * * 57 0 * * * * * * 2571 0 0 I 58 3523 * * * 3173 * * 813 * 2466 * * * * * * * 4273 * * 58 0 * * * * * * 2571 0 0 W 59 * * * * * * * * * * * * * * * * * * 178 3106 59 0 * * * * * * 2571 0 0 D 60 * * 1864 1327 * * * * * * * 5006 * * * * 2721 2797 * * 60 0 * * * * * * 2571 0 0 D 61 * * 0 * * * * * * * * * * * * * * * * * 61 0 * * * * * * 2571 0 0 L 62 * 3503 * * * * * * * 133 * * * * * * * * * * 62 0 * * * * * * 2571 0 0 R 63 * * * * * * * * * * * 3737 * 3751 492 3736 3946 * * * 63 0 * * * * * * 2571 0 0 S 64 * * 3906 * * 3946 * * * * * 2115 * 2308 * 1646 3106 * * * 64 0 * * * * * * 2571 0 0 L 65 * * * * * * * 2466 * 288 * * * * * * * * * * 65 0 * * * * * * 2571 0 0 S 66 * 2009 * * 5224 4240 * 2207 * 1429 * * * * * 5095 * 4192 * * 66 0 * * * * * * 2571 0 0 L 67 * * * * * * * 2114 * 1171 * * * 3946 * 3737 2744 4812 * * 67 0 * * * * * * 2571 0 0 F 68 * * * * 1526 * * * * * * * * * * * * * 791 3737 68 0 * * * * * * 2571 0 0 S 69 * * * * * * * 2351 * 2514 * * * * * 1067 2721 * * * 69 0 * * * * * * 2571 0 0 Y 70 * * * * 4812 * * * * * * * * * * * * * * 52 70 0 * * * * * * 2571 0 0 H 71 * * * * * * 1110 * * 3736 * * * 1115 * * * * * * 71 0 * * * * * * 2571 0 0 R 72 * * * * * * * 3946 * 2721 * * * 5107 1652 4240 1383 * * * 72 0 * * * * * * 2571 0 0 L 73 * 3946 * * 2988 * * * * 403 * * * * * 4249 * * * * 73 0 * * * * * * 2571 0 0 R 74 4550 * * * * * * 3613 * * * * * 4273 732 3106 4240 4249 * * 74 0 * * * * * * 2571 0 0 D 75 * * 1386 * * * * * * * * 1169 * * * 3216 3946 * * * 75 0 * * * * * * 2571 0 0 L 76 * 2845 * * 2889 * * * * 754 * * * * * 2911 * * * * 76 0 * * * * * * 2571 0 0 L 77 2585 * * * * 4812 * 2054 * 1504 * * * * * * * 2292 * * 77 0 * * * * * * 2571 0 0 L 78 * 4240 * * 3736 * * * * 1160 * * * * * 2550 * * 1979 * 78 0 * * * * * * 2571 0 0 I 79 * * * * * 3106 4249 1326 * 2157 * 3085 * * * * 3469 * * * 79 0 * * * * * * 2571 0 0 V 80 3587 * * * * * * 1541 * 2159 * * * * * 3737 * 1867 * * 80 0 * * * * * * 2571 0 0 T 81 3626 * * * * * * * 5210 5006 * * * 4082 2006 * 3198 4149 1507 4812 81 0 * * * * * * 2571 0 0 R 82 3946 * 3737 * * * * 4273 4082 * * * * * 819 * 2970 * 4192 * 82 0 * * * * * * 2571 0 0 I 83 5041 * * * * 3400 * 2831 * 1928 * * * 4192 * 3440 3192 2216 * * 83 0 * * * * * * 2510 0 0 V 84 * * * * 3400 * * 2453 * 1198 * * * * * * * 1802 * * 84 0 * * * * * * 2510 0 0 E 85 * * 4019 1114 * * * * 2331 * * * * 2206 * 4037 * * * * 85 0 * * * * * * 2510 0 0 L 86 4015 * * * * * 3756 3536 * 1128 * * * * 3460 * 3431 * * 2869 86 0 * * * * * * 2448 0 0 L 87 * * * * * * * 3819 * 167 * * * * * * * 4693 * * 87 0 * * * * * * 2448 0 0 G 88 * 3302 * * * 502 3351 * 3407 * * * * * * * * * * * 88 0 * * * * * * 2153 0 0 R 89 * * * * * * 2498 * * * * * * 1497 1093 * * * * * 89 0 * * * * * * 2038 0 0 R 90 * * * * * * * * * * * * * * 0 * * * * * 90 0 * * 0 * * * 1249 0 0 //