HHsearch 1.5 NAME c6u19A_ FAM FILE c6u19A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6u19A_.a3m DATE Sat Mar 21 08:42:36 2020 LENG 73 match states, 73 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.4411 1.4196 SEQ >ss_dssp CTTCTTTTTSSCCCCCCGGGGCCGGGCHHHHHHHHHHSTTCCTTCHHHHHHHHHHHHHHSCCCCCCSSCCCCC >sa_dssp DEEEEECDEEEEEEEEEEEEEDDEDEDEEDCCCDCDEEEECDCEDEEBEEDCDDDEEEEEEEEEEEEEEEEEE >ss_pred CCCCHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCC >ss_conf 9310122320112243436523531198999998620888888828999999999854530111003455319 >Consensus xxxxxxxsaxxtxxxxxxedxxdxxxDPefLqsVLxsLPGVDPnsexVrxaxxslaxxxxxxxxedkkxedkk >c6u19A_ SADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDKK >UniRef50_UPI00005A2BB8(159-205:205) PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit S5A) (Rpn10) (Multiubiquitin chain binding protein) (Antisecretory factor-1) (AF) (ASF) n=2 Tax=Mammalia RepID=UPI00005A2BB8 E=9e-09 s/c=1.31 id=73% cov=66% -ADIDASSATDTSEPAKEEDARDALRDPEFLQSVPESLPGEDLDNEAV------------------------- >UniRef50_P55035(343-380:396) 26S proteasome non-ATPase regulatory subunit 4 n=30 Tax=Coelomata RepID=PSMD4_DROME E=3e-06 s/c=1.41 id=67% cov=53% -----------------DEDYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSL------------------ >UniRef50_B7Q2S2(65-118:121) Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7Q2S2_IXOSC E=7e-06 s/c=0.96 id=39% cov=74% ------------------QEECEPIRDPAFLLGVLGSLPGVDPHSEAVRRALGSLTRSEDSKDEEGKDRKD-- >UniRef50_Q561Y1(297-372:372) Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 4 n=4 Tax=Eumetazoa RepID=Q561Y1_DANRE E=4e-17 s/c=1.17 id=70% cov=90% --------AAESEAPKEDEEDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQNRTKPPEGKKEDEKK >UniRef50_B3S8Y1(301-361:364) Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3S8Y1_TRIAD E=2e-12 s/c=1.20 id=40% cov=85% -----------NKEMDEEMDATDLISDPSVLQTVLGSLEGIDPNSDMVRNLMGSLQEEEEAMDVDDGKKENK- >UniRef50_O17453(340-406:420) 26S proteasome non-ATPase regulatory subunit 4 n=13 Tax=Bilateria RepID=PSMD4_SCHMA E=1e-07 s/c=0.86 id=50% cov=60% --------------------DLDVMYDAEFLESVLQSLPGVDTQNEDVRKAINALTKSQSQRG---------- >UniRef50_UPI000180CB56(106-172:174) PREDICTED: similar to AGAP005559-PA n=1 Tax=Ciona intestinalis RepID=UPI000180CB56 E=3e-05 s/c=0.74 id=37% cov=85% ------ESSMQSSSLNKANDNVN---DPEYLQSVLETLPGVNPHSDVVQAVVREVSSVGNNEKHKDQEED--- >UniRef50_D0NHB2(306-354:354) 26S proteasome non-ATPase regulatory subunit, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NHB2_PHYIN E=0.0005 s/c=0.93 id=45% cov=64% --------------------------DPKFVNSLLSGLPGVDPNDPKIQAAMAQMAKKDEKKDGDEEKKEDK- >UniRef50_A8QH80(277-349:349) Ubiquitin interaction motif family protein n=1 Tax=Brugia malayi RepID=A8QH80_BRUMA E=1e-11 s/c=0.97 id=38% cov=99% TEQMEVDDSASTQDATMTEDDQlgQLMSDPELLRQLLADLPGVDPNSQEVRDAVNSAA--AAKEKKEDKDNQSTK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 961 1040 * * * 1 0 * * * * * * 1518 0 0 A 2 752 * * 1300 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1737 0 0 D 3 * * 752 * * * * * * * * * * 1300 * * * * * * 3 0 * * * * * * 1737 0 0 I 4 * * * * * * * 752 * * 1300 * * * * * * * * * 4 0 * * * * * * 1737 0 0 D 5 * * 752 1300 * * * * * * * * * * * * * * * * 5 0 * * * * * * 1737 0 0 A 6 752 * * * * * * * * * * * * * * * * 1300 * * 6 0 * * * * * * 1737 0 0 S 7 * * 1739 2000 * * * * * * * * * * * 1151 * * * * 7 0 * * * * * * 1988 0 0 S 8 * * 1739 * * * * * * * * * * * * 514 * * * * 8 0 * * * * * * 1988 0 0 A 9 901 * * * * * * * * * * * * * * 1106 * * * * 9 0 * * * * * * 2059 0 0 M 10 1213 * * * * * * * * * 1478 * * * * * 2254 * * * 10 0 * * * * * * 2059 0 0 D 11 * * 1494 2470 * * * * * * * * * 2228 * 1994 * * * * 11 0 * * * * * * 2059 0 0 T 12 * * * * * * * * * * * 2319 * * * 1660 1050 * * * 12 0 * * * * * * 2252 0 0 S 13 * * * 2783 * * * * 2319 * * * * 2311 * 1143 * * * * 13 0 * * * * * * 2252 0 0 E 14 2783 * 2311 1053 * * * * * * * * * * * 2546 * * * * 14 0 * * * * * * 2252 0 0 P 15 2311 * * * * * * * * 2546 2319 * 1229 * * * * * * * 15 0 * * * * * * 2252 0 0 A 16 1829 * 2319 * * * * * 2783 * * 2546 * * * * 2311 * * * 16 0 * * * * * * 2252 0 0 K 17 * * * 1532 * * * * 1143 * 2311 * * * * * * * * * 17 0 * * * * * * 2252 0 0 E 18 2745 * 2047 1215 * * * * * * * * * * * * 2489 * * * 18 0 * * * * * * 2132 0 0 E 19 * * * 767 * * * * * * 2723 2960 * 2919 * * * * * * 19 0 * * * * * * 2199 0 0 D 20 * * 370 2143 * * * * * * * * * * * * * * * * 20 0 * * * * * * 2199 0 0 D 21 1900 * 1255 3198 * * * * * * * 3122 * * * * * * * 3490 21 0 * * * * * * 2294 0 0 Y 22 * 3198 * * * * * * * 3031 * * * 2773 2938 3490 2863 3122 * 2732 22 228 2773 * 1000 1000 * * 2294 1000 0 D 23 * * 887 2336 * * * * * * * 3122 * 2773 * * * * * * 23 176 * 3122 * * * * 2294 0 0 V 24 2823 * * * * * * * * 1627 * * 2985 * * * * 1291 * * 24 0 * * * * * 0 2190 0 1000 M 25 * * * * * * * 1367 * 2823 1086 * * * * * * * * * 25 0 * * * * * 0 2190 0 1000 Q 26 * * * * * 3276 * * * * * * * 2540 1902 1627 * * * 2904 26 0 * * * * 0 * 2190 0 1000 D 27 * * 0 * * * * * * * * * * * * * * * * * 27 0 * * * * * * 2560 0 0 P 28 3105 * * * * * * * * * * * 178 * * * * * * * 28 0 * * * * * * 2560 0 0 E 29 2522 * * 786 * * * * 2974 * * * * * * 3076 * * * * 29 0 * * * * * * 2560 0 0 F 30 * * * * 649 * * * * 3090 * * * * * * * 3076 * 2987 30 0 * * * * * * 2560 0 0 L 31 * * * * * * * * * 196 * * * * * * * 2974 * * 31 0 * * * * * * 2560 0 0 Q 32 * * * 3105 * * * * * 3349 * 2974 * 886 3090 * * * * * 32 0 * * * * * * 2560 0 0 S 33 * * * * * 3349 * * * * * * * 3090 * 587 3076 * * * 33 0 * * * * * * 2560 0 0 V 34 * * * * * * * * * 2031 * * * * * * * 405 * * 34 0 * * * * * * 2560 0 0 L 35 * * * * * * * * * 149 * * 3353 * * * * * * * 35 0 * * * * * * 2560 0 0 E 36 3090 * * 1244 * 2206 * * * * * * * 3105 * 2974 * * * * 36 0 * * * * * * 2560 0 0 N 37 * * 3090 * * 2974 * * * * * 2334 * * * 1215 2987 * * * 37 0 * * * * * * 2560 0 0 L 38 * * * * * * * * * 0 * * * * * * * * * * 38 0 * * * * * * 2560 0 0 P 39 * * * 3076 * * * * * * * * 182 * * * * * * * 39 0 * * * * * * 2560 0 0 G 40 * * * * * 0 * * * * * * * * * * * * * * 40 0 * * * * * * 2560 0 0 V 41 * * * 3353 * * * 3076 * * * * * * * * * 352 * * 41 0 * * * * * * 2560 0 0 D 42 * * 195 * * * * * * * * 2987 * * * * * * * * 42 0 * * * * * * 2560 0 0 P 43 * * * * * * * * * 3353 * * 348 * * * 3105 * * * 43 0 * * * * * * 2560 0 0 N 44 * * 3353 * * * 2156 * * * * 1042 * 2380 * * * * * * 44 0 * * * * * * 2560 0 0 N 45 * * 2974 * * * * * * * * 1571 * * * 899 * * * * 45 0 * * * * * * 2560 0 0 E 46 * * 2031 970 * * * * * * * * 2974 3090 * * * * * * 46 0 * * * * * * 2560 0 0 A 47 1342 * 3105 3090 * * * * 2974 * 3076 * * * * * * 2987 * * 47 0 * * * * * * 2560 0 0 I 48 * * * * * * * 2002 * * * * * * * * * 414 * * 48 0 * * * * * * 2560 0 0 R 49 * * * * * * * * * * * * * 1734 516 * * * * * 49 0 * * * * * * 2297 0 0 N 50 1734 * 2354 * * * * * 2884 * * 1877 * * 3380 * * * * * 50 0 * * * * * * 2297 0 0 A 51 465 * * * * * * * * 2895 * * * * * * * 2828 * * 51 0 * * * * * * 2297 0 0 M 52 * * * * * * * 2884 * 3380 1211 * * * * * * 1572 * * 52 0 * * * * * * 2297 0 0 G 53 2646 * * * * 1182 * * * * * 1951 * * 2828 * * * * * 53 0 * * * * * * 2297 0 0 S 54 2884 * * 2828 * * * * * * * * * 2646 * 827 * * * * 54 0 * * * * * * 2297 0 0 L 55 3021 * * * * * * * * 795 2646 * * * * * * 2828 * * 55 0 * * * * * * 2297 0 0 A 56 1167 * * * * * * * * * * * * 2779 * 2739 1948 * * * 56 185 * 3055 * * * * 2676 0 0 S 57 * * * 2637 * * * * 1566 * * * * * 2972 1419 * * * * 57 0 * * * * * 0 2548 0 1000 Q 58 * * * 2637 * * * * 2516 * * * * 2329 * 1784 * 2515 * * 58 0 * * * * 0 * 2548 0 1000 A 59 2288 * 2727 1953 * 2739 * * * * * 3482 * 2770 * * * * * * 59 0 * * * * * * 2676 0 0 T 60 3055 * 3151 1753 * * * * * * * 2739 * * 3482 2770 3566 * * * 60 0 * * * * * * 2676 0 0 K 61 2779 * * * * * * * 1491 * * 2739 * 2770 * 3151 3482 * * * 61 0 * * * * * * 2676 0 0 D 62 * * 3566 1888 * * * * 1502 * 2779 * * * 2770 * * * * * 62 0 * * * * * * 2676 0 0 G 63 * * 1289 * * 2114 * * 1888 * * * 3482 * * * * * * * 63 0 * * * * * * 2676 0 0 K 64 * * * 2785 * 2538 2557 * 2024 * * * 3203 * * * * 2660 * * 64 0 * * * * * * 2607 0 0 K 65 * * 1598 1336 * * * * 1870 * * * * * * * * * * * 65 0 * * * * * * 2607 0 0 D 66 * * 801 2538 * 1979 * * * * * * * * * * * * * * 66 0 * * * * * * 2607 0 0 K 67 * * * 2538 * 2660 * * 1001 * * * * 2557 * * * * * * 67 0 * * * * * * 2607 0 0 K 68 * * 1798 2557 * * * * 882 * * * * * * * * * * * 68 0 * * * * * * 2607 0 0 E 69 * * * 1388 * * * * 1598 * * 2812 * * 2785 * * * * * 69 0 * * * * * * 2607 0 0 E 70 * * 1844 1204 * * * * 2785 * * * * 2812 * * * * * * 70 0 * * * * * * 2607 0 0 D 71 * * 1003 2886 * * * * * * * 2403 * * * 2499 * * * * 71 0 * * * * * * 2377 0 0 K 72 * * * * * * * * 360 * * * * * * * 2177 * * * 72 0 * * * * * * 2199 0 0 K 73 * * * * * * * * 0 * * * * * * * * * * * 73 0 * * 0 * * * 1642 0 0 //