HHsearch 1.5 NAME c6sj6Y_ FAM FILE c6sj6Y_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6sj6Y_.a3m DATE Sat Apr 11 08:19:52 2020 LENG 56 match states, 56 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.7 EVD 0.4644 2.3904 SEQ >ss_dssp CCCCSSSHHHHGGGTCCCCCCHHHHHHHHCCEECCCCCCBTTTTBCCSCCCEECCC >sa_dssp EEEDEDDDEEDDEECDBEDEDEEBDEEDEEEEDDDEEEECEEEECCBDBCDDEEEE >ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEEECC >ss_conf 95106899999970898633679999986554433201382122023224545329 >Consensus xxxtxSxxxqlRxsGkvPVDxxeliKxvRexVmlhdYQiDPlKxxlxHvDxlavxM >c6sj6Y_ GKQTRSDLKQLRKSGKVPVDEVEFIKVIREKVMVADYQFDPLKNQITHIDFLAINM >UniRef50_C2C4D1(22-102:213) 50S ribosomal protein L25/general stress protein Ctc n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4D1_LISGR E=3e-08 s/c=0.74 id=48% cov=93% -----SNITEVRESGRIPaivygyqsenvpvsVDELDLLKLVREngrnavftvnldgkkvNVLLHDYQIDPLKNKLVHVDLLAVDM >UniRef50_Q724K2(16-96:207) 50S ribosomal protein L25 n=18 Tax=Listeria RepID=RL25_LISMF E=0.0002 s/c=0.58 id=48% cov=93% -----SEVTRLRSEGKVPgiiygyksenvpvsVDSLELIKAVRDngrnavfsvtvdgkklNVLLHEYQVDPLKDVLVHVDLLAVDM >UniRef50_Q8EU33(14-96:215) 50S ribosomal protein L25 n=1 Tax=Oceanobacillus iheyensis RepID=RL25_OCEIH E=2e-07 s/c=0.69 id=50% cov=96% ---TKSATKQIRLSGRVPavvygkakdpknvsVDSVDLVKTVRDEgrnaiislqvenssvdVMLHDYQIDPIKDELLHADFYVVNM # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 K 2 * * * * * * * * 0 * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 Q 3 * * * * * * * * * * * * * 0 * * * * * * 3 0 * * * * * * 1000 0 0 T 4 * * * * * * * * * * * * * * * * 0 * * * 4 0 * * * * * * 1405 0 0 R 5 * * * * * * * * 1000 * * * * * 1000 * * * * * 5 0 * * * * * * 1405 0 0 S 6 * * * * * * * * * * * * * * * 0 * * * * 6 0 * * * * * * 1732 0 0 D 7 1972 * 1882 2068 * * * * * * * 2087 * * * * * * * * 7 0 * * * * * * 1732 0 0 L 8 * * * * * * * 2087 * 1882 * * * * * * 1972 2068 * * 8 0 * * * * * * 1732 0 0 K 9 * * * * * * * * 926 * * * * * * * 1077 * * * 9 0 * * * * * * 1732 0 0 Q 10 * * * 2087 * * * * * * * * * 926 2068 * * * * * 10 0 * * * * * * 1732 0 0 L 11 * * * * * * * 1972 * 972 * * * * * * * 2087 * * 11 0 * * * * * * 1732 0 0 R 12 * * * * * * * * * * * * * * 0 * * * * * 12 0 * * * * * * 1732 0 0 K 13 * * * 2087 * * * * 1882 1972 * * * * * 2068 * * * * 13 0 * * * * * * 1732 0 0 S 14 * * * 2068 * * * * * * * * * * * 393 * * * * 14 0 * * * * * * 1732 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1732 0 0 K 16 * * * * * * * * 972 * * * * * 1029 * * * * * 16 0 * * * * * * 1732 0 0 V 17 * * * * * * * 2087 * * * * * * * * * 387 * * 17 0 * * * * * * 1732 0 0 P 18 * * * * * * * * * * * * 0 * * * * * * * 18 1882 456 * 3807 107 * * 1732 1527 0 V 19 * * * * * * * * * * * * * * * * * 0 * * 19 0 * * * * * * 1732 0 0 D 20 * * 0 * * * * * * * * * * * * * * * * * 20 0 * * * * * * 1732 0 0 E 21 * * * 981 * * * * * * * * * * * 1019 * * * * 21 0 * * * * * * 1732 0 0 V 22 * * * * * * * * * 1077 * * * * * * * 926 * * 22 0 * * * * * * 1732 0 0 E 23 * * 1029 972 * * * * * * * * * * * * * * * * 23 0 * * * * * * 1732 0 0 F 24 * * * * 1882 * * * * 456 * * * * * * * * * * 24 0 * * * * * * 1732 0 0 I 25 * * * * * * * 972 * 2087 * * * * * * * 1972 * * 25 0 * * * * * * 1732 0 0 K 26 * * * * * * * * 0 * * * * * * * * * * * 26 0 * * * * * * 1732 0 0 V 27 2068 * * * * * * * * 2087 * * * * * * 1972 1882 * * 27 0 * * * * * * 1732 0 0 I 28 * * * * * * * 1882 * * * * * * * * * 456 * * 28 0 * * * * * * 1732 0 0 R 29 * * * * * * * * * * * * * * 0 * * * * * 29 0 * * * * * * 1732 0 0 E 30 * * 1019 981 * * * * * * * * * * * * * * * * 30 926 1077 * 4000 93 * * 1732 1260 0 K 31 * * * 1972 * * * * 1882 * * 1077 * * * * * * * * 31 424 1972 * 4000 93 * * 1732 1000 0 V 32 * * * * * * * * * * * * * * * * * 0 * * 32 0 * * * * * * 1732 0 0 M 33 * * * * * * * * * 1077 926 * * * * * * * * * 33 0 * * * * * * 1732 0 0 V 34 * * * * * * * * * 456 * * * * * * * 1882 * * 34 0 * * * * * * 1732 0 0 A 35 1882 * * * * * 456 * * * * * * * * * * * * * 35 0 * * * * * * 1732 0 0 D 36 * * 393 2068 * * * * * * * * * * * * * * * * 36 0 * * * * * * 1732 0 0 Y 37 * * * * * * * * * * * * * * * * * * * 0 37 0 * * * * * * 1732 0 0 Q 38 * * * * * * * * * * * * * 0 * * * * * * 38 0 * * * * * * 1732 0 0 F 39 * * * * 1882 * * 1029 * * * * * * * * * 2068 * * 39 0 * * * * * * 1732 0 0 D 40 * * 0 * * * * * * * * * * * * * * * * * 40 0 * * * * * * 1732 0 0 P 41 * * * * * * * * * * * * 0 * * * * * * * 41 0 * * * * * * 1732 0 0 L 42 * * * * * * * 1972 * 424 * * * * * * * * * * 42 0 * * * * * * 1732 0 0 K 43 * * * * * * * * 0 * * * * * * * * * * * 43 0 * * * * * * 1732 0 0 N 44 * * 1019 * * * * * * * * 981 * * * * * * * * 44 0 * * * * * * 1732 0 0 Q 45 * * * 1972 * * * * 2087 * * * * 1882 * * * 2068 * * 45 0 * * * * * * 1732 0 0 I 46 * * * * * * * 1882 * 456 * * * * * * * * * * 46 0 * * * * * * 1732 0 0 T 47 * * * * * * * * * 1972 * * * * * * 1882 1077 * * 47 0 * * * * * * 1732 0 0 H 48 * * * * * * 0 * * * * * * * * * * * * * 48 0 * * * * * * 1732 0 0 I 49 1972 * * * * * * 1882 * * * * * * * * * 1077 * * 49 0 * * * * * * 1732 0 0 D 50 * * 0 * * * * * * * * * * * * * * * * * 50 0 * * * * * * 1732 0 0 F 51 * * * * 926 * * * * 1077 * * * * * * * * * * 51 0 * * * * * * 1732 0 0 L 52 * * * * * * * * * 424 * * * * * * * * * 1972 52 0 * * * * * * 1732 0 0 A 53 424 * * * * * * * * * * * * * * * * 1972 * * 53 0 * * * * * * 1732 0 0 I 54 * * * * * * * 1882 * * * * * * * * * 456 * * 54 0 * * * * * * 1732 0 0 N 55 * * 1077 * * * * * * * * 926 * * * * * * * * 55 0 * * * * * * 1732 0 0 M 56 * * * * * * * * * * 0 * * * * * * * * * 56 0 * * 0 * * * 1732 0 0 //