HHsearch 1.5 NAME c6s3sJ_ FAM FILE c6s3sJ_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6s3sJ_.a3m DATE Sat Mar 28 08:29:06 2020 LENG 80 match states, 80 columns in multiple alignment FILT 62 out of 66 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.5035 2.1013 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHC >sa_dssp EDEECDEDCEEDCDEBEECCDDCCDDCBEDCCEECDEEEECEEDDDDCCDEBDEEDDEDCDDCDDECEECCEEDDDECEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 98899999999999999999988999999999999999999899999999999999999999999999999999754329 >Consensus MtxxxvixlxxxalxxxlxxsxPxLxxaLvVGLiIsIfQLsFvPKiiavxlxllxxgpWMlxxlxdftxxlfxxipxxix >c6s3sJ_ MTPEIFVELFKESLWLVLIMVCAIIIPSLLIGLVVAIFQLSFLPRLIITLLALMFFGHWMTQMLMDFFYSMIERLPQVLY >UniRef50_B6AMB4(24-111:112) Flagellar biosynthesis protein FliQ n=2 Tax=Leptospirillum RepID=B6AMB4_9BACT E=0.0002 s/c=0.54 id=31% cov=100% MNVQTAIDLTHNALVMALILTLPVLVVSLVIGVLVSLFQavtqinettLSFLPKVAGVVGVLLVLMPWMVRQLIDYTATLFRELPGVV- >UniRef50_A9BQ80(1-88:89) Flagellar biosynthetic protein FliQ n=9 Tax=Betaproteobacteria RepID=A9BQ80_DELAS E=2e-06 s/c=0.61 id=35% cov=100% MTSQYVLTFGREALTLLLMISMPVLGVVLAVGLAVSVFQavtqvheatLAFVPKLISAVLVFAIAGPWMLSTLVDFIRRTIETIPQAV- >UniRef50_A8MHF4(1-88:89) Flagellar biosynthetic protein FliQ n=5 Tax=Firmicutes RepID=A8MHF4_ALKOO E=7e-06 s/c=0.59 id=26% cov=100% MSESMVIELGQQAMFTILLLSAPTLLIGLIVGLAVSIFQattqiqeatLAFIPKIVAILGSLVVFGPWLLSMMINFTLKLFTNMNNFI- >UniRef50_Q3ADD1(1-87:89) Flagellar biosynthetic protein FliQ n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADD1_CARHZ E=4e-05 s/c=0.56 id=32% cov=99% MASLYFIHLAQKSFTVLSLLVGPPLIVSLVVGLIVGILQaatqiqeqtLTFVPKLIAVFLTLLLLSGWMLNIMVDFTGQIFQEMAKV-- >UniRef50_C4Z5H6(1-88:88) Putative uncharacterized protein n=3 Tax=Bacteria RepID=C4Z5H6_EUBE2 E=0.0002 s/c=0.54 id=24% cov=100% MDAGQVVTIARQTIWVIVKTSVPLLLVSMIVGLIISLFQtltsiqeqtLTFVPKLLAIMIALMLMGNWILNEIVSFMQMLWGSFGQYV- >UniRef50_C8WYW6(1-81:91) Flagellar biosynthetic protein FliQ n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYW6_DESRD E=2e-05 s/c=0.61 id=29% cov=91% MTPDFVVALTRQSVETILLVTSPMMISAVVVGLLISIFQaatqiqeqtLSFAPKVAAVMVALTIFAPWIIKIVLTYTEEVL-------- >UniRef50_D2LCZ2(1-86:88) Flagellar biosynthetic protein FliQ n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCZ2_RHOVA E=0.0001 s/c=0.56 id=19% cov=98% MNQADAMDLVKSAIWVVILASGPMIGAAMAVGIAISLFQaltqiqeatLTFIPKIVTVFVVAMLTASFIGSVLLGISEQAYSRIEH--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 5919 * 4659 83 * * * * * * * * * 1 0 * * * * * * 4148 0 0 T 2 5914 * 3036 4478 * 5495 * * * * * 3122 * * * 2871 881 * * * 2 0 * * * * * * 4168 0 0 P 3 3681 * 4252 2901 5383 * * 4302 * * 5834 * 1903 2919 * 3090 4225 3777 * * 3 0 * * * * * * 4168 0 0 E 4 3807 * 1781 1533 * 4850 * * * 4598 * 4265 5418 4765 * 4879 4975 4717 * * 4 0 * * * * * * 4168 0 0 I 5 4371 * 4087 4510 2667 5390 * 3413 * 4043 4534 * * 3749 * 4204 3108 3083 * 3221 5 0 * * * * * * 4170 0 0 F 6 2218 * * * 3375 * * 4238 * 3488 * * * * * 5390 * 998 * 5507 6 0 * * * * * * 4170 0 0 V 7 5347 * * * * 4820 * 1693 * 2148 3029 5912 * 6076 * * 4663 2240 * * 7 0 * * * * * * 4170 0 0 E 8 4523 * 2115 2360 * 3103 3935 * * * 6179 4065 * 4200 * 3108 4234 * * 4266 8 0 * * * * * * 4170 0 0 L 9 5361 * * * 3711 * 5398 1724 * 1291 3828 * * * * * * 4069 4864 * 9 0 * * * * * * 4170 0 0 F 10 2113 5617 * * 2998 2510 * 3482 * 3393 2830 * * * * 4581 4437 4865 * * 10 0 * * * * * * 4170 0 0 K 11 3575 * * 4196 * 5510 4984 * 2377 * 5691 * * 2891 1440 4893 4487 6106 * * 11 0 * * * * * * 4170 0 0 E 12 5677 * 3229 1749 * 5877 * * 5316 5398 5785 4294 * 2099 3968 3434 4278 * * * 12 0 * * * * * * 4170 0 0 S 13 748 * * * 5775 2777 * * * * 5877 * * * * 3001 3590 6003 * * 13 0 * * * * * * 4170 0 0 L 14 * * * * 4031 * * 1735 * 1411 3199 * * * * * * 2946 * 5398 14 0 * * * * * * 4170 0 0 W 15 6152 * 6465 3057 3376 5794 5785 5148 3521 3660 3665 * * 4869 4966 5736 4832 3713 2473 3790 15 0 * * * * * * 4170 0 0 L 16 6152 * * * * * * 3535 * 1542 3967 5398 * 5857 * * 2217 2081 * * 16 0 * * * * * * 4170 0 0 V 17 2218 * * * 6200 4902 * 2555 * 3413 4531 * * * * 4596 2733 2065 * * 17 0 * * * * * * 4170 0 0 L 18 4476 * * * 3737 * * 2386 * 811 5361 * * * * 5944 6048 3988 * * 18 0 * * * * * * 4170 0 0 I 19 5600 * * 3575 6156 * * 2972 2473 1576 2842 * * * * 6187 6170 4377 * 5428 19 0 * * * * * * 4170 0 0 M 20 3802 * * * 5809 5553 * 2021 * 1885 4170 * * * * 5361 4198 2073 * * 20 0 * * * * * * 4170 0 0 V 21 2062 4930 * * * 3959 * 4764 * 4908 5775 * * * * 1371 4400 2826 * * 21 0 * * * * * * 4170 0 0 C 22 1772 4694 * * * 1694 * 4920 * 3098 4216 * * * * 3270 * 4264 * * 22 0 * * * * * * 4170 0 0 A 23 4694 * * * * * * * * * * * 198 * * * * 3483 * * 23 0 * * * * * * 4170 0 0 I 24 4828 * * * * * * 2631 * 1773 2731 * 3494 * * 5617 4311 2317 * * 24 0 * * * * * * 4170 0 0 I 25 * * * * * * * 2983 * 412 4389 * * * * * * 3753 * * 25 0 * * * * * * 4170 0 0 I 26 3579 5857 * * * 2721 * 2035 * 1423 4867 * * * * * * 3377 * * 26 0 * * * * * * 4170 0 0 P 27 3493 * * * * * * 2892 * 4044 4971 * 2702 * * 3419 2890 1728 * * 27 0 * * * * * * 4170 0 0 S 28 1144 * * * * 2700 * * * * * * * * * 1494 5673 5729 * * 28 0 * * * * * * 4170 0 0 L 29 * * * * 4772 * * 4554 * 503 2768 * * * * * * 3869 * * 29 0 * * * * * * 4170 0 0 L 30 2370 * * * 5553 * * 2397 * 2303 * * * * * 6117 * 1402 * * 30 0 * * * * * * 4170 0 0 I 31 4220 * * * * * * 3386 * * 6003 * * * * 6098 6187 310 * * 31 0 * * * * * * 4170 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 4170 0 0 L 33 * * * * 4889 * * 3267 * 288 * * * * * * * 4522 * * 33 0 * * * * * * 4170 0 0 V 34 3402 5873 * * 4276 5691 * 1386 * 3121 4382 * * * * * 6106 1958 * * 34 0 * * * * * * 4170 0 0 V 35 * * * * * * * 994 * 5289 * * * * * * * 1082 * * 35 0 * * * * * * 4170 0 0 A 36 2499 * * * * 2683 * * * * * * * * * 583 * * * * 36 0 * * * * * * 4170 0 0 I 37 * * * * * * * 781 * 2182 4595 * * * * * * 2677 * * 37 0 * * * * * * 4170 0 0 F 38 4816 * * * 578 5605 * 4663 * 2093 * * * * * * * * * * 38 0 * * * * * * 4170 0 0 Q 39 * * * * * * * * * * * * * 0 * * * * * * 39 5905 24 * 3170 170 * * 4170 4162 0 L 40 * * * * * * * 3784 * 131 6149 * * * * * * * * * 40 0 * * * * * * 4170 0 0 S 41 2623 * * * * * * * * 5361 4764 * * * * 1288 1497 6322 * * 41 0 * * * * * * 4170 0 0 F 42 * * * * 54 * * * * * * * * * * * * * * 4778 42 0 * * * * * * 4170 0 0 L 43 3167 * * * * * * 1887 * 2761 * * * * * * * 1087 * * 43 0 * * * * * * 4170 0 0 P 44 * * * * * * * * * * * * 0 * * * * * * * 44 0 * * * * * * 4170 0 0 R 45 * * * * * * * * 233 * * * * * 2746 * * * * * 45 0 * * * * * * 4170 0 0 L 46 4684 * * * * * * 1247 * 1448 4188 * * * * * * 3077 * * 46 0 * * * * * * 4170 0 0 I 47 3824 * * * 4875 * * 1296 * 2415 * * * * * * * 1734 * * 47 0 * * * * * * 4170 0 0 I 48 1181 * * * * 4599 * 3221 * 5461 4693 * * * * 3687 3747 2344 * * 48 0 * * * * * * 4170 0 0 T 49 4701 * * * * * * 2257 * 5736 3525 * * * * * 2438 1113 * * 49 0 * * * * * * 4170 0 0 L 50 3075 * * * 1503 4017 * 4596 * 1771 4050 * * * * * * 3796 * * 50 0 * * * * * * 4170 0 0 L 51 3827 * * * 5892 3265 * 2996 * 1031 * * * * * * * 2367 * * 51 0 * * * * * * 4170 0 0 A 52 1833 * * * * 3849 * 5969 * * 4155 * * * * 4058 2701 1458 * * 52 0 * * * * * * 4170 0 0 L 53 4250 * * * 4195 5969 * 2423 * 777 3753 * * * * * * 4942 * * 53 0 * * * * * * 4170 0 0 M 54 3162 * * * 4753 * * 2288 * 1397 3381 * * * * 5553 5090 3058 * * 54 0 * * * * * * 4170 0 0 F 55 4192 * * * 1821 * * 2709 * 1396 * * * * * * * 3201 * 5605 55 0 * * * * * * 4170 0 0 F 56 2479 3618 * * 1785 4051 * * * 2401 4431 * * * * * 2886 5809 * * 56 0 * * * * * * 4170 0 0 G 57 3458 * * * 4218 731 * 5926 * 3199 4858 * * * * 3426 * * * * 57 0 * * * * * * 4170 0 0 H 58 5942 * * 5600 * 2939 3913 * 4196 * * 4401 910 * * 2919 * * * * 58 0 * * * * * * 4170 0 0 W 59 5289 * * * 3514 * * * * * * * * * * * * * 173 * 59 0 * * * * * * 4170 0 0 M 60 * * * * * * * 2528 * 3934 433 * * * * 5617 * * * * 60 0 * * * * * * 4170 0 0 T 61 4764 * * * 5048 3647 * 3455 * 1053 2780 * * * * 6223 4747 3803 * 6389 61 0 * * * * * * 4170 0 0 Q 62 5553 * 4209 5241 * 6098 4107 * 3808 * 4436 3060 * 2568 2982 2645 2911 * * * 62 0 * * * * * * 4170 0 0 M 63 6152 * * 3677 * * * 3464 2609 3256 3389 4525 * 2892 4790 4565 3223 3694 * 6355 63 0 * * * * * * 4170 0 0 L 64 5183 5677 * * * * * 2738 * 1233 1659 * * * * * * 4034 * * 64 0 * * * * * * 4170 0 0 M 65 5289 * 4896 * 5553 * * 2934 * 2655 3942 6223 * 5857 * 3154 2201 2291 * * 65 0 * * * * * * 4170 0 0 D 66 4474 * 1174 2784 * 4193 * * 5035 * * 4062 * 6117 5093 3042 4146 * * * 66 0 * * * * * * 4170 0 0 F 67 * * * * 726 * * 5658 * 4701 4664 * * * * * * * * 1747 67 0 * * * * * * 4170 0 0 F 68 2998 * * * 2609 * * 5729 * * 4081 * * * * 4212 996 4182 5461 * 68 0 * * * * * * 4170 0 0 Y 69 4103 * 5065 3424 5158 5944 4662 4884 5226 4399 * 4831 * 4241 2178 4713 3095 2902 * 5102 69 0 * * * * * * 4170 0 0 S 70 * * 4313 2105 4379 5926 4316 * 6290 5461 5177 2641 * 3441 3057 4310 4260 * * 3960 70 0 * * * * * * 4170 0 0 M 71 5658 6335 * * * * * 1864 * 1049 4336 * * * * * 5729 2823 * * 71 0 * * * * * * 4170 0 0 I 72 6135 * * * 977 * * 2930 * 2776 5461 * * * * * * * 5022 2767 72 0 * * * * * * 4170 0 0 E 73 2978 * 3541 3276 5914 2821 * * 5838 4224 6096 * * 2919 5077 2441 3670 * * 5986 73 0 * * * * * * 4162 0 0 R 74 5759 * * 4221 5857 * * 4919 4308 4865 5895 1532 * 3331 2798 3166 4097 * * 5871 74 0 * * * * * * 4161 0 0 L 75 4771 * * * 4305 * * 801 * 2284 3858 * * * * * * 5360 * 4637 75 0 * * * * * * 4160 0 0 P 76 2708 * * 4450 4467 5421 6100 * * * 5588 3523 761 * * 5636 * * * * 76 0 * * * * * * 4056 0 0 Q 77 4491 * 4147 * * 5215 2977 * 4381 * * 2369 * 2070 * 3036 3322 * * 4526 77 0 * * * * * * 4072 0 0 V 78 5081 * * * 2981 * * 2728 * 1805 3247 * * * * * * 2276 * 3398 78 0 * * * * * * 4029 0 0 L 79 * * * * * * * 997 * 3084 * * * * * * * 1392 * * 79 0 * * * * * * 3870 0 0 Y 80 * * * * * * * * * * * * * * * * * * * 0 80 0 * * 0 * * * 1000 0 0 //