HHsearch 1.5 NAME c6rx3B_ FAM FILE c6rx3B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6rx3B_.a3m DATE Sat Nov 23 08:21:24 2019 LENG 86 match states, 86 columns in multiple alignment FILT 72 out of 76 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4270 0.0361 SEQ >ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSHHHHHTSCCCCCCCCHHHHHHHHHHHHHHHHHHHHC >sa_dssp EEDEEBEDDAEEBCEDAEDDDDEBEEDCEEBEDEDEECEDDDEECEEEEBCBECEEEECEEDEEECDECDDDBDDCDEDADDCDEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC >ss_conf 97899999999999999999999999999999999988765479986578102236540165378773799999999999987509 >Consensus txxxLxxxxxxdxxxxxxslxxlxxxxtslxxvvlQNRxaLDlLxxxxGGxCxxlxexCCfyixxsgxvxxxixxlxxxxxxlxex >c6rx3B_ TYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGGICLALDEKCCFWVNQSGKVQDNIRQLLNQASSLRER >UniRef50_UPI00001F3AE2(33-94:145) PREDICTED: similar to ERV-BabFcenv provirus ancestral Env polyprotein precursor (Envelope polyprotein) (BabFcenv) n=1 Tax=Mus musculus RepID=UPI00001F3AE2 E=2e-07 s/c=0.91 id=35% cov=66% --------------------------VTYLMGVVLQNWRALGLMTAEIGGTCIGMVEEYCFYVSEDELVKQNIQMFKDLQQK---- >UniRef50_Q9H9K5(390-469:563) Uncharacterized protein LP9056 n=1 Tax=Homo sapiens RepID=L9056_HUMAN E=0.0004 s/c=0.58 id=24% cov=93% ----ISKAMEQEFSATKQTLEAHQSKVSSLASASRKDH-VLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLK-- >UniRef50_Q8K030(624-706:714) BC035947 protein n=2 Tax=Mus musculus RepID=Q8K030_MOUSE E=5e-24 s/c=1.34 id=33% cov=98% --QSLRDAVNVDLEMLEKSTDVLEKSLSSLSEVVLQNRRGLDLLFLKEGGLCTALKEECCFYADHTGIVRDSMQKREKDSNDKSE- >UniRef50_UPI0001554C29(198-280:372) PREDICTED: similar to female expressed transcript 1, partial n=2 Tax=Ornithorhynchus anatinus RepID=UPI0001554C29 E=3e-21 s/c=1.23 id=34% cov=93% ----LSAELRLLVNYTGDSITALQSEVSSLSRVALQNRMALDLLLANQGGVCVVLNQSCCFYRDESSRIETDVQKITTQMGRL--- >UniRef50_P97406(462-544:596) Proviral envelope protein n=5 Tax=Mus musculus RepID=P97406_MOUSE E=3e-16 s/c=1.04 id=24% cov=92% -YKVLSSAIDADLMELGKSLSKSKTSLTSLREATLRNQREQDFQSLQQDGLCKPLEKRCCTFVDNLKHARELLAKVRKR------- >UniRef50_UPI000194E736(1868-1951:2293) PREDICTED: similar to Gag-Pro-Pol-Env protein n=8 Tax=Taeniopygia guttata RepID=UPI000194E736 E=5e-14 s/c=0.94 id=29% cov=97% --SHLECWVNKNANATSAALSDLLADEQTTRHATLQNRAAIDFLLLAHGHSCEDFDGLCCFnLSSRSKSIQAHIQQIREQVKDLK-- >UniRef50_UPI00016E021E(368-448:518) UPI00016E021E related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E021E E=2e-13 s/c=0.95 id=27% cov=83% ---------------TRDAVAGLSEQVAATSLRTVQNRKALDMLLAEKGGVYAMFGDQCCTFIPNntvpDGSVTWALEELRTLSDEMKE- >UniRef50_Q14264(517-594:604) Transmembrane protein n=5 Tax=Hominoidea RepID=ENR1_HUMAN E=5e-13 s/c=0.97 id=28% cov=91% ---RLQAVLEIITNETAGALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNlTNCCLELDDEGKV---IKEITAKIQKL--- >UniRef50_P51519(332-416:515) Transmembrane protein n=272 Tax=Bovine leukemia virus RepID=ENV_BLV E=2e-11 s/c=0.82 id=26% cov=94% --TSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLGfqSLCPTINEPCCFLrIQNDSIIRlGDLQPLSQRVST---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 2480 285 * * * 1 0 * * * * * * 2383 0 0 Y 2 * * * * 1966 * 4582 * * 3457 * * * * * 3624 * * * 916 2 0 * * * * * * 2956 0 0 S 3 5383 * * 5346 * * 4289 * 3281 * * 3449 * 2438 3233 2813 2580 * * 3244 3 0 * * * * * * 3695 0 0 Q 4 * * 4187 5425 * * 2892 4918 3328 * * 3828 * 2388 3524 2426 4179 3950 * * 4 0 * * * * * * 3736 0 0 L 5 * * * * 5285 * * 3743 * 153 * * * * * * * * * * 5 0 * * * * * * 3935 0 0 S 6 * * * 3429 * 4827 3494 4245 * * * * * 2667 3547 1138 6314 * * 5612 6 0 * * * * * * 3926 0 0 K 7 2288 3935 6140 * * * 4032 3754 2856 5594 4424 5038 * 3412 4310 3398 3246 * * * 7 0 * * * * * * 3950 0 0 E 8 1178 * 4610 2943 * * 5485 * 5051 * * * * 3099 * * 4927 3062 3935 * 8 0 * * * * * * 3950 0 0 I 9 4838 * * * 4006 * * 2578 * 1664 2689 * * * * * * 1917 * * 9 0 * * * * * * 3950 0 0 A 10 4574 * 1634 2392 * * 4180 5284 5335 5258 * 2795 * 4251 5647 3986 4883 * * * 10 0 * * * * * * 3950 0 0 N 11 3369 * 4803 2696 * 6101 * 2968 3935 3984 5051 3489 * 2782 5594 4135 3984 5297 * 6488 11 0 * * * * * * 3950 0 0 N 12 3785 * 946 3821 * * * 3040 * 4433 * 3157 * * * 4115 * * * * 12 0 * * * * * * 3950 0 0 I 13 3284 * * * 3445 * * 2500 * 1516 3707 * * 4476 * 4336 3951 4529 * * 13 0 * * * * * * 3962 0 0 D 14 3314 * 3669 2757 * * * * 4680 * 4545 2388 * 2366 3787 3445 4582 * * * 14 0 * * * * * * 3962 0 0 T 15 1829 6347 4703 2126 * * 4823 5563 4969 5195 6149 5526 * * 2611 3943 4615 * * 5822 15 0 * * * * * * 4066 0 0 M 16 * * * * 5282 * * 2864 * 2077 4168 6667 * * * 3788 1187 5455 * * 16 21 6146 * 2807 222 * * 4067 1000 0 A 17 2697 * * 2072 * 3315 * 4669 4040 * * * * 3469 3176 2975 3656 * * * 17 0 * * * * * * 4105 0 0 K 18 4278 * 2215 3508 * 4923 5500 * 2572 * * * * 2299 4274 3695 3478 * * * 18 0 * * * * * * 4135 0 0 A 19 1414 * * * * 4510 * * * 5194 * * * * * 1191 3116 * * * 19 0 * * * * * * 4146 0 0 L 20 * * * * 5141 * * 1497 * 1003 * * * * * * 6655 3202 * * 20 0 * * * * * * 4160 0 0 T 21 4189 * 3451 2600 * 5146 * 6242 6023 6190 * 3661 5193 3762 4724 1997 3065 5049 * * 21 0 * * * * * * 4160 0 0 T 22 2281 * 3486 * 6899 3473 6878 5815 3371 3050 * 4557 * 4346 4521 3536 3560 4878 * 5460 22 0 * * * * * * 4160 0 0 M 23 * * * * 5061 * 4135 3770 * 641 4102 5638 * * * 4794 4695 4450 * * 23 0 * * * * * * 4160 0 0 Q 24 3444 * 5306 2653 * * 3254 * 2861 3021 * 4677 * 1965 * 4170 7071 * * * 24 0 * * * * * * 4160 0 0 E 25 3607 * 3297 2432 * 5141 * * 2519 * * * * 4654 2571 3379 3550 * * 4695 25 0 * * * * * * 4160 0 0 Q 26 5061 * 3952 3148 7097 * * * 4135 * * 4091 * 1516 * 1778 * 5128 * * 26 0 * * * * * * 4160 0 0 I 27 5477 * * 4103 5250 * 4960 3166 * 1501 5917 * * 5972 6940 * 3606 1870 * * 27 0 * * * * * * 4237 0 0 D 28 3662 * 3650 4630 * 5710 * 7358 6049 4121 * 6695 * 5618 * 2093 1307 6122 * 5621 28 36 * 5339 * * * * 4237 0 0 S 29 3132 * * 4073 * * * 5301 5461 * * 4719 5698 4370 5651 861 4611 * * 4020 29 0 * * * * * 0 4202 0 1000 L 30 * * * 5102 5909 * * 4231 * 832 3722 * 5660 * * * 2738 3418 * * 30 0 * * * * 0 * 4202 0 1000 A 31 1816 * * * * * 5621 * * * 4620 * * * 1913 1442 * * * 5542 31 0 * * * * * * 4237 0 0 A 32 3897 * * 1538 * 4281 4080 * 4427 3336 6359 4362 * 3294 5603 3439 4132 * * * 32 0 * * * * * * 4257 0 0 V 33 2326 * 5625 * 4507 * * 6558 * * 3379 * * * 5512 * * 839 * 4358 33 0 * * * * * * 4257 0 0 V 34 2323 * * * * * * 3908 * * * * * * * 3128 2684 1109 * * 34 0 * * * * * * 4274 0 0 L 35 3786 * * * 5187 * * 4608 * 700 4096 * * * 4230 5593 * 4754 5751 4172 35 0 * * * * * * 4274 0 0 Q 36 * * 6318 5751 * * * 5085 4230 4983 * * * 344 4446 * * * 5593 * 36 0 * * * * * * 4274 0 0 N 37 * * 4230 * * * * * * * * 79 * * * * * * * * 37 0 * * * * * * 4274 0 0 R 38 * 5878 * * * * 3476 * * * * * * 3934 390 * * * 3947 * 38 79 * 4230 * * * * 4274 0 0 R 39 3525 * * * * * 4997 4445 4209 3529 2764 * * 4207 1144 5818 * 5397 * * 39 0 * * * * 0 * 4025 0 1000 G 40 820 5878 * 4907 * 1831 * * * * * * * * 5360 5347 * 4230 * * 40 0 * * * * * * 4274 0 0 L 41 * * * * * * * 2574 * 375 * * * 4907 * * * 5187 * * 41 0 * * * * * * 4274 0 0 D 42 * * 114 6742 * 4586 * * * * * 5321 * * * * * * * * 42 0 * * * * * * 4217 0 0 M 43 * * * * 2483 * * 3261 * 1138 3097 * * * * * * 5173 4778 3618 43 0 * * * * * * 4217 0 0 L 44 * * * * * * * 4128 * 320 4570 * 4267 4897 * * * 6138 * * 44 0 * * * * * * 4228 0 0 T 45 * * * * 2290 * * * * 1320 5941 * * * * 4457 1932 4807 * 4813 45 0 * * * * * * 4228 0 0 A 46 1294 * * * * 5612 * 4813 * 1462 6152 * * 4995 * 5963 3617 6422 5763 * 46 0 * * * * * * 4228 0 0 A 47 2899 * 5860 1873 * 5916 5334 * 2842 4854 * 5524 5917 2493 3259 5886 5439 * * * 47 0 * * * * * * 4228 0 0 Q 48 * * * 1841 * * 3211 4570 2593 4813 * * * 2179 3510 * * * 4037 * 48 0 * * * * * * 4228 0 0 G 49 * * 4841 5480 * 239 * * * * * 5842 * 4241 5320 * * * * * 49 53 4803 * 1000 1000 * * 4186 1000 0 G 50 5600 * * * * 386 3196 * * * * * * * 5927 4803 4241 * * * 50 0 * * * * * * 4186 0 0 I 51 4241 * * 5888 * 4858 * 5257 * 1578 * * * * 5842 4633 2224 1927 * * 51 0 * * * * * * 4186 0 0 C 52 * 53 * * * * * * * * * * * * * 6133 * * * 5528 52 0 * * * * * * 4186 0 0 L 53 2119 * * 4310 * 3200 * 4305 2818 3174 5278 * 4803 * 4971 4071 4820 3223 * 6382 53 0 * * * * * * 4186 0 0 A 54 2087 * 4147 4248 3621 4537 * 4090 4161 5239 2703 * 4841 * * * 3495 3289 * 6552 54 0 * * * * * * 4188 0 0 L 55 * * * * 2047 * 5321 2498 * 1229 4537 * * * * * * 3537 * * 55 0 * * * * * * 4188 0 0 D 56 4857 * 4404 3789 * 1598 6007 * 2429 5904 * 2523 * 3801 7019 * * 4502 * * 56 60 4626 * 0 * * * 4217 1159 0 E 57 * * 3600 1179 * 3118 * * 3297 * 5390 5943 3887 4724 * 6463 3292 * * * 57 0 * * * * * * 4380 0 0 K 58 * * 4577 1505 * * * * 5189 3541 4404 3878 4697 2832 4787 2930 6044 * * 6007 58 26 5832 * 0 * * * 4380 1000 0 C 59 * 62 * * * * * * * * * * * * * * * * * 4577 59 0 * * * * * * 4380 0 0 C 60 * 36 * * 5331 * * * * * * * * * * * * * * * 60 0 * * * * * * 4380 0 0 F 61 6170 * * * 939 * * 3871 * 3481 * * * * * 5878 2516 4155 * 4092 61 134 3496 * 0 * * * 4529 1612 0 W 62 * * 5091 3731 2556 4873 * * * 2966 * * * 5761 * * * * 6454 907 62 59 4635 * 0 * * * 4516 1000 0 V 63 2850 * * * * * * 1143 * 3698 * * 4768 * 5342 3013 5397 3029 * * 63 98 3935 * 1472 645 * * 4516 1630 0 N 64 * * 1402 4910 * * * * * * * 1785 3085 4608 * 2843 * * * * 64 0 * * * * * * 4594 0 0 Q 65 * * 3137 3066 * * 2292 5193 4392 * * 2268 * 3546 3858 5072 * * 4776 4074 65 38 5250 * 2000 415 * * 4594 1000 0 S 66 5410 * 3024 5378 * * * * 5072 3462 5846 3449 * 5690 * 1307 2662 * * 5745 66 0 * * * * * * 4594 0 0 G 67 * * * 2878 * 962 * * 3427 4563 * * * * * 3319 3119 * * * 67 60 5515 5745 775 1267 * * 4594 1452 0 K 68 2599 * 5382 4296 * * 4849 2643 4346 3048 6191 4753 * 4275 3712 3411 7068 3121 * * 68 75 4310 * 0 * * 0 4581 1600 1000 V 69 3905 * * * * * * 1538 * 5158 * * 4655 * * 4432 6588 1106 * * 69 39 * 5225 * * * 0 4581 0 1000 Q 70 * * 3765 2781 * * 5894 5240 2985 * 6538 * * 2800 1850 4792 3070 6057 * 6727 70 84 4147 * 1275 769 1000 1000 4543 1559 1322 D 71 4436 * 1946 2183 * 2931 5115 5546 4723 5957 * 5105 * 4610 * 3991 4195 5348 5232 * 71 0 * * * * * 0 4561 0 1000 N 72 3999 * 3338 4743 * * 5482 * 3349 4822 * 2631 * 4887 6488 1679 2979 * * * 72 10 7251 * 1585 585 0 * 4561 1000 1000 I 73 6117 5187 * * 5557 * * 1199 * 1824 3010 * * * * * * 3398 * * 73 0 * * * * * * 4597 0 0 R 74 2892 * 3489 4383 * 5429 * * 3183 6326 * 4765 * 1703 2938 5717 3639 6807 * * 74 0 * * * * * * 4583 0 0 Q 75 * * 4897 2542 * 5549 4982 * 1609 5541 4613 6662 4599 2187 4286 * 5082 * * * 75 11 * 6986 * * * * 4583 0 0 L 76 3763 * * * 4602 6292 * 2032 * 1114 3859 * * * 5097 * * 3882 * * 76 15 6633 * 1585 585 0 * 4579 1000 1000 L 77 5487 4843 6278 6438 * * 4235 * 2038 2851 * * * 4444 1777 4543 4102 * 5157 5941 77 49 4893 * 1585 585 * * 4566 1438 0 N 78 5063 * 2589 1908 * 5346 4289 * 2268 * * 5045 * 3879 6964 5552 2984 * * * 78 0 * * * * * * 4566 0 0 Q 79 4017 * 3767 3240 * 3585 5160 5925 3698 2799 5084 * * 2926 2003 * * * * * 79 0 * * * * * * 4520 0 0 A 80 3762 * * 4374 * * 5346 2757 5376 2374 4638 * 5810 4324 3511 2660 * 2893 * * 80 0 * * * * * * 4561 0 0 S 81 5297 * 3627 3387 * 3936 * * 3749 6352 * 3522 * 2063 3509 2977 3252 * * * 81 14 6692 * 0 * * * 4561 1000 0 S 82 * * 3452 3359 * 5710 * * 1882 * * 3894 * 4037 2938 2854 3309 * 5456 * 82 0 * * * * * * 4580 0 0 L 83 * * 5791 4386 * * * 3037 4242 1174 3850 5460 * 6175 2996 * * 3555 * * 83 29 5650 * 0 * * * 4243 1000 0 R 84 3766 * * * 5635 * 3574 * 1518 * * * * 5121 1475 3560 * * * * 84 0 * * * * * * 3934 0 0 E 85 * * 2581 840 * * * * 4343 * * * * 2153 * * * * * * 85 0 * * * * * * 3395 0 0 R 86 * * * * * * * * 2523 * * * * 2340 670 * * * * * 86 0 * * 0 * * * 2014 0 0 //