HHsearch 1.5 NAME c6pppD_ FAM FILE c6pppD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6pppD_.a3m DATE Sat Jun 20 08:21:19 2020 LENG 88 match states, 88 columns in multiple alignment FILT 107 out of 511 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4560 0.6622 SEQ >ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEEECGGGEEEEEECHHHHHHHHHHHHHHCC >sa_dssp DEECDCBDDADDDDBCACBEECBCBDBDAEDBDEECBACADEADCCCEDDECEDECEECDBDBECBDDCECCEDBEDCBDEEDEECEE >ss_pred CCCHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEECEEEECCCEEEEEEECHHHHHHHHHHHHHCCC >ss_conf 9107769884898899998399599999999968777799989999438863878234999078089999370564578877641169 >Consensus mxPlxlLxxxxgxxVxVxLxxgxxxxGxLxxxDxxmNixLxxxxxxxxxgxxxxxxxxxxIRGxxIxxIxxpdxxxxxxxxexxxxxx >c6pppD_ MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVAKQQAQQRE >UniRef50_A8BZP8(6-89:90) Small nuclear ribonucleoprotein Sm D3, putative n=3 Tax=Giardia intestinalis RepID=A8BZP8_GIALA E=4e-08 s/c=0.70 id=20% cov=86% --PIQLLFEAIDMCVSVETRTGSIYEGKLVSVEPTLSVTISNCTITHPTGQK-ETAQTVMLRGSEVRFVSVPNALVDS---------- >UniRef50_B4QAN7(44-116:157) GD25953 n=1 Tax=Drosophila simulans RepID=B4QAN7_DROSI E=0.0007 s/c=0.62 id=21% cov=83% ----------QGHSVLIDLHNETSVAGIIDVADGHMTCELTHAVFIDRNGGQ-HPFDNFMVRNRMIRQIHIPSYLD---AEQELRS-- >UniRef50_C7G054(13-83:92) Small nuclear ribonucleoprotein E n=1 Tax=Dictyostelium discoideum RepID=C7G054_DICDI E=0.0008 s/c=0.63 id=24% cov=77% --PITLIFKFltQKTEVQIMLfeNTDIRIQGVIIGLDEYMNLVLDNASELSIKKKTKKPLGQILLKGDNISLV------------------- >UniRef50_C5PGJ8(1-89:98) U6 snRNA-associated Sm-like protein LSm2 , putative n=5 Tax=Onygenales RepID=C5PGJ8_COCP7 E=4e-17 s/c=1.00 id=24% cov=101% MLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKyPHLSSVKNIFIRGSVVRYIVLPQEAVDRALLEDATRRE >UniRef50_B4LSD0(43-108:134) GJ16334 n=2 Tax=Drosophila RepID=B4LSD0_DROVI E=2e-08 s/c=0.91 id=24% cov=76% ------LKKWLGRVVRVTLKNKLVLVGIFSCTDHDQNLIIANCDTFMPDDHEPIAYGNVVVPGDQIESFAVD---------------- >UniRef50_B6ACD7(3-92:98) LSM domain-containing protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6ACD7_9CRYT E=5e-07 s/c=0.62 id=18% cov=97% ----SILLTFSERLVSVLTTDGKVYIGSLKGYDQLTNIILAKCREKVYEANskviKYIELGLFLIRGDSIALIgeIESEDPVKSAISEEEKNKK >UniRef50_Q4D851(33-104:111) Small nuclear ribonucleoprotein SmD2, putative n=8 Tax=Trypanosomatidae RepID=Q4D851_TRYCR E=6e-05 s/c=0.68 id=17% cov=78% --PFSVLDSAMrnGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDVVElaMVNKQQKERSIRNMFLRGGSVVFIV------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2221 * * 627 * * * * * * 2859 * * 1 0 * * * * * * 4307 0 0 L 2 * * * * 4446 * * 1895 * 1129 3812 * * 4147 * * * * * 3314 2 0 * * * * * * 4831 0 0 P 3 * * * * 3727 * * * * * * * 169 * * * * * * 4832 3 0 * * * * * * 5563 0 0 L 4 * * * * 3491 5577 * 1976 * 1181 5697 5638 * * * 4694 5596 3677 * 5780 4 0 * * * * * * 6110 0 0 T 5 * 4436 2669 2977 * 5854 5856 5457 2865 5266 * 5837 5679 4554 4099 3097 2526 5605 * * 5 0 * * * * * * 6329 0 0 L 6 4306 * * * 2941 * 5772 3358 * 1293 6092 * * * * * 6156 1989 * 6086 6 37 5296 * 1585 585 * * 6548 1000 0 L 7 * * * * 4340 * * 2940 * 426 * * * * * * * 3716 * * 7 0 * * * * * * 6655 0 0 N 8 6570 6008 4737 3391 4694 * 4564 * 2081 4843 5241 4036 6077 2903 2510 4799 5966 5284 * * 8 0 * * * * * * 6677 0 0 A 9 3075 5845 4108 3317 6285 3940 * 6441 2777 4249 * 2504 * 6099 6179 2560 4526 * * * 9 0 * * * * * * 6692 0 0 T 10 3024 4154 * 4811 3431 * * 5535 * 1715 5028 4783 * 6148 * 2764 5481 5381 5297 3919 10 14 6688 * 1000 1000 * * 6692 1000 0 Q 11 5203 * * 3979 * * * 3312 3848 2098 4745 * * 3281 3651 4867 4388 2294 * * 11 39 5218 * 1000 1000 * * 6743 1596 0 G 12 6381 * 2936 5044 * 1023 4534 * 4480 * * 2462 6088 6508 5849 * 5478 * * * 12 0 * * * * * * 6863 0 0 R 13 5640 6871 * 3504 5569 * 3537 * 1564 5587 6150 6035 * 3667 2692 4749 3772 * * 4513 13 15 6552 * 1000 1000 * * 6872 1000 0 P 14 * 4803 5938 3729 5654 5832 * 4758 2957 4361 6897 4171 3523 4279 2569 3668 4014 3590 * 5257 14 0 * * * * * * 6872 0 0 I 15 * * * * * * * 2187 * 3558 5196 * * * * 6233 4176 738 * * 15 0 * * * * * * 6904 0 0 L 16 * 6153 * 5305 4561 * 6919 3611 4105 2911 6049 6918 * 5363 3095 3406 2356 3053 6835 4226 16 18 6358 * 1000 1000 * * 6904 1000 0 V 17 * 6159 * * * * * 1593 * 3851 * * * * * * * 773 * * 17 0 * * * * * * 6918 0 0 E 18 5807 * 3866 1607 * * 3557 3920 3059 5358 4765 6478 * 4329 3867 * 5084 3574 6622 * 18 0 * * * * * * 6918 0 0 L 19 6693 6396 * * 5619 * * 4011 * 635 4496 * * * * 6020 2676 5342 * 6474 19 20 6216 * 1605 575 * * 6918 1097 0 K 20 5031 6374 5537 6398 6622 5976 5220 6474 1626 4688 * 3396 6245 4471 2222 5202 4334 4250 * * 20 0 * * * * * * 6918 0 0 N 21 5312 * 1556 5127 6020 3280 6159 6432 6617 * * 1606 * * 6493 4104 4448 * 6892 * 21 17 * 6403 * * * * 6918 0 0 G 22 6158 * 2881 3397 * 942 6108 * 5513 * * 2577 * * * 5022 * * * * 22 0 * * * * 0 * 6898 0 1000 E 23 5560 6670 5242 3662 5553 * 6996 3545 3409 4163 5146 6381 * 6040 2124 3039 3001 4443 * 5549 23 12 6932 * 0 * * * 6920 1000 0 T 24 5000 6042 5280 2794 * * 6792 3594 4174 4276 5764 6899 * 4191 4516 3000 2264 3374 * 5058 24 12 6908 * 0 * * * 6916 1000 0 F 25 4785 6571 * * 3601 * * 2320 * 1943 5281 * * * * * 5806 2702 * 2230 25 0 * * * * * * 6916 0 0 N 26 5231 7055 4988 3458 * * 5520 3010 3332 * 5026 4401 * 4908 2688 3658 3587 3073 * 4312 26 15 6636 * 1000 1000 * * 6916 1000 0 G 27 5035 * * * * 45 * * * * * * * * * * * * * * 27 0 * * * * * * 6922 0 0 H 28 * 6958 6890 5288 5358 * 7026 2587 3348 4237 5068 7262 * 4901 4025 5749 1853 2864 * 4497 28 0 * * * * * * 6922 0 0 L 29 * * * * 3758 * * 2789 * 566 6116 * * * * 6381 6488 3872 * * 29 0 * * * * * * 6922 0 0 E 30 5901 5837 4085 3294 5463 6733 4717 3157 3825 3374 4181 * * 4209 3530 4177 3508 3100 * * 30 0 * * * * * * 6913 0 0 N 31 2583 3694 5781 4261 * 2494 5523 * 5768 5408 6845 2915 * * 4854 2291 5215 5216 * 6607 31 0 * * * * * * 6922 0 0 C 32 5246 3611 * * 2484 * * 3118 * 3608 * * * * * 5000 3840 1734 * 3129 32 0 * * * * * * 6922 0 0 D 33 * * 175 4163 * 6675 * * * * * 5593 * * * 6095 * 6242 * * 33 0 * * * * * * 6922 0 0 N 34 3560 * 3472 3733 * 3224 4864 6983 3550 6830 5155 3680 3698 2809 3822 3828 * 4661 * * 34 14 6690 * 0 * * * 6922 1000 0 Y 35 3824 * 4283 6024 2341 6265 2566 * 6965 4123 5680 4189 6412 4611 4685 6042 4294 * 6411 2521 35 0 * * * * * * 6922 0 0 M 36 5015 4495 * * 3857 3965 * 6638 6269 2471 1213 6722 * 5256 * 4692 4654 5797 5894 6945 36 0 * * * * * * 6928 0 0 N 37 * * 4153 * * 6463 * * * * * 146 * * * 6200 6038 * * * 37 0 * * * * * * 6928 0 0 L 38 * 4188 * * 4947 * * 1875 * 1527 3280 * * * * * 5754 2544 * * 38 0 * * * * * * 6928 0 0 T 39 5367 5865 7362 4604 5068 * 4108 2795 4089 3325 6431 5251 * 5112 5604 4233 3627 1844 6620 6526 39 0 * * * * * * 6928 0 0 L 40 * * * * * * * 3486 * 263 3952 * * * * * * 6261 * * 40 0 * * * * * * 6928 0 0 R 41 4036 6836 3054 2899 5446 5683 * 5473 2747 5472 * 5777 * 6563 3550 2331 3352 5785 * 6581 41 25 5840 * 2095 385 * * 6928 1741 0 E 42 5890 7648 1546 4225 * 4676 4631 * 3792 * * 1974 * 3939 5256 3955 * * * 5640 42 25 6766 6945 0 * * * 6928 1000 0 V 43 1644 2708 * 6438 * * * 4930 * * * * 5701 * 6880 4568 3533 1668 6418 * 43 35 5387 * 2033 404 0 * 6932 2267 1000 I 44 5562 5459 4914 3540 5491 * 6904 4115 3441 * 6947 5753 * 4729 4279 3646 2031 2476 6445 5323 44 52 4821 * 2633 254 * * 6928 2168 0 R 45 6681 5706 4382 1380 5320 * 5763 3151 * 3987 4810 6751 * 4246 4153 * 5561 3161 * 4918 45 98 4545 5456 1589 583 * * 6928 2672 0 T 46 * 6923 5829 5189 3929 * 6645 2892 4369 3552 6013 * * 4629 3558 4455 2100 3073 6853 4166 46 90 4907 5187 3082 181 1480 641 6932 2259 2094 M 47 5609 * 2732 6656 5055 3955 6133 3570 3467 4474 4189 6993 5838 4220 3538 3205 4272 3321 * 6581 47 92 5088 4948 3557 128 324 2313 6926 2084 2997 P 48 3626 6417 4337 4140 4976 4391 * 5178 2808 5310 6408 4228 2269 4726 3565 4208 5638 5297 * 4986 48 82 6619 4477 3322 152 409 2018 6901 1000 2634 D 49 5454 * 1676 2373 * 5207 5629 5354 4019 4519 * 3003 6892 5036 * 4212 4733 5831 6562 6519 49 133 4749 4296 2583 263 315 2349 6868 2293 3004 G 50 5091 * 4026 5776 6428 1182 6396 6368 3594 * * 3672 3709 4788 * 3256 4789 * * * 50 109 4004 6587 1032 969 548 1662 6897 3457 3208 D 51 5022 * 4079 2972 * 4066 5591 4867 2669 5652 6334 3357 4645 3335 4444 4030 4330 3734 * 6689 51 83 4781 5667 1695 533 * 0 6905 2437 2111 K 52 3817 6542 5137 2799 5035 * 4504 6509 2605 5278 * 4369 5615 3239 4016 3362 3802 4240 6375 * 52 164 5740 3493 1287 760 636 1488 6878 1647 3033 F 53 4516 * 5094 3967 3598 4610 * 3977 3374 4973 5158 5600 2834 4684 4901 4549 2898 3637 * 5095 53 126 4407 4779 2041 402 461 1871 6810 2587 4022 F 54 3691 * 4991 4231 4650 3924 4645 3334 3422 5230 4891 * 6512 6311 2499 2678 5910 4356 5848 * 54 43 * 5076 * * 264 2581 6865 0 3124 R 55 4243 * 6687 3842 5483 4806 4059 * 2326 6339 * 3965 4118 4673 3708 2842 3832 4399 * 4526 55 128 4732 4401 1099 908 383 2100 6899 2477 2602 L 56 6142 5161 * * 3809 * 6704 2692 6358 1584 4488 * 6451 * 6341 4053 * 3232 6809 2915 56 126 5125 4190 1899 450 0 * 6876 2257 3163 P 57 5906 * 3088 3177 * 1429 * * 3690 * * 3749 3341 4482 4731 4694 6353 * * * 57 18 6348 * 1000 1000 1257 782 6848 1000 2999 E 58 4690 5682 3944 2896 6688 * 6445 6399 4246 2720 4379 3344 6358 4184 3653 4129 3157 5673 * 5454 58 28 5716 * 1904 448 1466 648 6871 1695 2216 C 59 4261 3675 * 6531 4618 * * 2429 * 2787 3054 * * * 6402 6827 5218 1873 * 4423 59 17 6433 * 2322 322 0 * 6885 1000 1637 Y 60 6442 * * * 1544 * 5186 3634 * 2670 3751 5243 * * * 4040 6206 2861 * 3884 60 0 * * * * * * 6911 0 0 I 61 6581 6658 * * * * * 1311 * 2044 6601 * * * * * * 1626 * * 61 30 * 5597 * * * * 6911 0 0 R 62 6420 * * * 6710 * * * 2688 * 6197 5733 3868 4799 611 * 6516 6617 * 6512 62 0 * * * * 880 1131 6889 0 1537 G 63 4627 5631 * 6075 6248 279 * * 6373 6540 * 6004 6522 * 6439 5250 * * * * 63 0 * * * * * 0 6902 0 1000 N 64 4704 5311 2600 3359 * 5255 * 5587 3937 * * 2560 * 6102 3263 2297 3837 * * * 64 0 * * * * 0 * 6902 0 1000 N 65 4892 6423 * 4442 5461 6919 4406 * 6369 5159 4517 1682 * 3079 6736 2485 3778 5660 * 4790 65 28 5712 * 0 * * * 6905 1085 0 I 66 * * * * * * * 721 * 5618 * * * * * * 6427 1508 * 6677 66 0 * * * * * * 6905 0 0 K 67 4618 * 6326 4765 * 6400 * 4090 3380 3004 * * * 4715 1742 3828 4428 2600 * * 67 0 * * * * * * 6948 0 0 Y 68 6401 4412 6875 * 2370 * 4917 4918 4696 2831 5088 4705 * 4514 * 4000 4777 4930 * 1996 68 17 6417 * 1585 585 * * 6948 1000 0 L 69 * 5242 * * 3544 5616 * 1059 * 5510 4830 * * * * * * 1598 * * 69 13 6788 * 1000 1000 * * 6948 1000 0 R 70 3808 * 4759 5328 * 3730 2492 3880 4287 4564 6133 * * 4534 3809 2676 4158 3782 * 4708 70 18 6310 * 1585 585 * * 6887 1000 0 I 71 5595 * * 4223 3753 * 5339 2126 * 1793 4730 * 4130 6226 * * 5182 2527 * * 71 0 * * * * * * 6874 0 0 Q 72 4666 * 2752 4732 * * * 5213 * 4178 * 5072 967 4639 6327 5549 5348 4736 * 6069 72 38 5278 * 1539 608 * * 6662 1629 0 D 73 4785 * 1316 2215 * * 4714 * 3742 * * 4018 5131 5226 * 3096 * * * * 73 45 5012 * 3585 126 * * 6584 1085 0 E 74 3980 * 2121 2078 * 5666 * 4680 4305 * 5807 4099 6025 5800 3313 2958 * * * 5526 74 22 * 6016 * * * * 6482 0 0 V 75 2709 * * 3259 * * * 2001 5712 2122 * * 5833 * * * 5523 2391 * 6149 75 167 3197 * 0 * * 0 6421 2745 1000 L 76 * * 2642 3336 * * * 2471 * 1695 5608 * * 5201 5401 * * 2471 * * 76 44 * 5052 * * * 0 6178 0 1000 S 77 4512 * 2186 5290 * * 5270 3846 2724 4296 3998 4180 3923 3976 * 4577 3587 4617 * * 77 0 * * * * * 0 5998 0 1714 Q 78 2192 * 5328 3546 5096 * * * 4235 * 4178 5128 * 2294 3791 2864 4008 5118 * * 78 0 * * * * * 0 5945 0 1714 V 79 2534 * 4501 4274 3701 * 4631 3073 4230 3950 * 4633 4913 4080 3497 * 3369 4074 * * 79 0 * * * * 0 * 5777 0 1714 A 80 2260 * * 4702 * * * 3364 3754 1786 * * 4983 3314 4595 4442 * 4863 * 4730 80 0 * * * * * * 5790 0 0 K 81 3482 * * 3213 * * 4653 2779 3158 2556 * * 4679 2448 * 3563 * 5138 * * 81 0 * * * * * * 5759 0 0 Q 82 5128 * 3815 1106 * * * * 5570 * * 4456 * 1774 * 4981 4472 * * * 82 0 * * * * * * 5691 0 0 Q 83 4570 4453 2599 2015 * * * * 4444 * 4722 * * 2042 4121 * 4759 * 3668 * 83 0 * * * * * * 5657 0 0 A 84 3066 * * 1628 * 4219 4812 * 5551 2736 * * * * 3002 4441 4570 4453 * 4722 84 0 * * * * * * 5657 0 0 Q 85 5166 4956 * * * * * 4628 2441 * * 4462 4896 1935 2193 3563 5008 4633 * * 85 0 * * * * * * 5613 0 0 Q 86 * * * 3527 * * * * 3215 * * 3010 3055 2966 1861 3207 4335 * * * 86 0 * * * * * * 5149 0 0 R 87 * * * 3277 * * * * 2421 * * 3583 * 3885 1028 3871 * * * * 87 0 * * * * * * 4610 0 0 E 88 * * 4121 1288 * * * * 1808 * * * * 2016 * * * * * * 88 0 * * 0 * * * 4610 0 0 //