HHsearch 1.5 NAME c6p57B_ FAM FILE c6p57B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6p57B_.a3m DATE Sat Dec 14 08:35:29 2019 LENG 118 match states, 118 columns in multiple alignment FILT 54 out of 58 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4344 -0.5628 SEQ >ss_dssp CCSSCCSCSCEEEEEEEECCSSSSCCEEEEEEEECCCCCCCCCSSSCCCSCCSTTCEEESSEEEEEEECTTCCSSSCCEEEEEEESCEEECSCCCSSSCC CCCCSCCCSSCCSSCSCC >sa_dssp EEDDEEEECDDDECEDDBEDEEBEDCDDCEBBCBCBDBDDDEEEEEEEEEEDECCCBCCEECEEDDCEADECCEEDECECDCCCAECCCDCECEEEDEEE EEEEEEDECCDEEEEEEE >ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCC EEECCCCCCCCCCCCCCC >ss_conf 9877777620267799995488888269996202245322022433666665334012587488999937788889823998110554257888885310 020146864478757889 >Consensus xxgxxxxxCxxxnxtixvEkxgCxxcxxIxTtxCxGxCxTxepxxxxpxxxxxqxVCTYxxxxyxTvxLpxCxxgvdPxxxypvAxSCxCxxCxtxxtdC xxxxxxpxxCxxpxxxxx >c6p57B_ SRGPLRPLCQPINATLAAEKEACPVCITFTTSICAGYCPSMKRVLPVILPPMPQRVCTYHELRFASVRLPGCPPGVDPMVSFPVALSCHCGPCRLSSTDC GGPRTQPLACDHPPLPDI >UniRef50_B2CKR3(14-123:128) Follicle-stimulating hormone n=4 Tax=Acipenser RepID=B2CKR3_ACISI E=6e-31 s/c=1.23 id=39% cov=92% --GQCHASCALENITIGIEKDGCGNCVSVNTTSCAGRCLTQADVYKSSISLYTQLVCTFKEISYVTVQLPNCPEHVDPFYTYPVALSCECGQCATDYTDC GTLSLGPSDC-------- >UniRef50_C6SUR8(30-134:134) Putative glycoprotein hormone-beta5 n=1 Tax=Strongylocentrotus purpuratus RepID=C6SUR8_STRPU E=7e-18 s/c=0.87 id=27% cov=82% --------CHVRQYLQYkAEKPGCRPQNLV-LDACFGRCDTYEvPELEFPFKSSHHEMCSYHQVQLATIELDDCDPGVNRTYTYRNAKSCKCRNCTPFNT FCFGLSL------------- >UniRef50_A5HKL3(5-90:98) Gonadotropin I beta polypeptide (Fragment) n=2 Tax=Percomorpha RepID=A5HKL3_ORYLA E=2e-15 s/c=0.97 id=29% cov=74% --------CHPKNVSIPVESCGISGC--VHTTICEGRCYHEDPNYISYEDHPKEKICS-GDWSYEVKFIEGCPVG----FKYPVAKSCECTTCNTRTTYC G----------------- >UniRef50_Q5TQD0(69-148:171) AGAP008302-PA n=4 Tax=Arthropoda RepID=Q5TQD0_ANOGA E=4e-06 s/c=0.66 id=35% cov=29% -----------------------------------------------------------------------CHPDADPAarqYEYMEPKSCNCQTCSSTD TSCEGPK-------------- >UniRef50_Q58P39(50-123:127) Glycoprotein hormone beta subunit n=1 Tax=Aplysia californica RepID=Q58P39_APLCA E=3e-11 s/c=0.94 id=35% cov=39% -------------------------------------------------------VCTYTGRVPRQVTLSGCEDYPDPTFEVFDAAGCECRLCDSDYTSC ------------------ >UniRef50_P12656(16-129:138) Thyrotropin subunit beta n=183 Tax=Tetrapoda RepID=TSHB_MOUSE E=1e-29 s/c=1.14 id=37% cov=96% --GQAASFCIPTEYTMYVDRRECAYCLTINTTICAGYCMTRDINGKLFLPKYalSQDVCTYRDFIYRTVEIPGCPHHVTPYFSFPVAVSCKCGKCNTDNS DCIHEAVRTNYCTKPQ---- >UniRef50_C6SUR3(75-151:170) Putative glycoprotein hormone-beta5-II n=1 Tax=Bombyx mori RepID=C6SUR3_BOMMO E=1e-12 s/c=0.96 id=26% cov=62% ----------------------------VKVPSCGGRCDSREIsDWEFPFKRSYHPVCVYGTRIPLIVRLRHCDEDVTPgtdIFHYVAAENCRCKVCSSQ HTSC------------------ >UniRef50_UPI0000588683(44-118:135) PREDICTED: similar to glycoprotein hormone subunit beta 5 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000588683 E=5e-12 s/c=0.96 id=32% cov=62% -----------------AEKSGCDSSI-INVRGCWGRCDSYQvPSLLTKLFDVSHPMCTPASYKNITVTLENCAPGIDPTFTYVEATTCGC--------- ------------------- >UniRef50_C6SUS0(113-194:195) Putative glycoprotein hormone-beta5 n=1 Tax=Ciona intestinalis RepID=C6SUS0_CIOIN E=4e-14 s/c=0.96 id=29% cov=64% -------------------RRGCHNKTYTRIQKCEGYCESYEIPKVNDRIERIHSVCTAQTTRTVRVVNPYCEPGVNPFFYITVPTSCNCRNC------- ------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1778 0 0 R 2 * * * 2275 * * * * 2675 * * * * * 1704 1600 * * * * 2 0 * * * * * * 2011 0 0 G 3 * * * 2568 * 266 * * * * * * * * * * * * * * 3 0 * * * * * * 2555 0 0 P 4 * * * * * * * * * * * 2694 1470 1656 * 2579 * * * * 4 0 * * * * * * 2810 0 0 L 5 2176 3382 * * * 3671 * * * 1184 * * * * * 3672 * 3543 * * 5 0 * * * * * * 2810 0 0 R 6 3915 * * * * 3646 3538 * * * 2855 * * * 876 * * 3565 * * 6 0 * * * * * * 2869 0 0 P 7 3995 * * * * * 4139 * * * * * 1098 3593 * 2229 3094 * * * 7 0 * * * * * * 2983 0 0 L 8 * * * * 2340 * * * * 1976 3305 * 1998 * 4519 4046 * 4253 4638 * 8 172 3153 * 1000 1000 * * 3014 1072 0 C 9 * 0 * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 3633 0 0 Q 10 2530 5271 * 4384 * * 2233 4358 4896 * 5068 * * 2440 3070 4630 4891 4301 * * 10 0 * * * * * * 3633 0 0 P 11 * * * * * * * * * 1334 4891 * 1366 * * * * 2460 * * 11 0 * * * * * * 3633 0 0 I 12 3940 * * 5189 * * 4896 2545 3241 * * 4832 * * 2460 4891 1895 3693 * * 12 0 * * * * * * 3633 0 0 N 13 * * 3318 2433 * * * * * * * 679 * 4112 4954 * * * * * 13 0 * * * * * * 3711 0 0 A 14 3305 * * 5566 3194 * * 2216 * * 4863 * * 3511 * * 4978 2841 * 1944 14 0 * * * * * * 3711 0 0 T 15 * * * * * * * 5499 * 4112 4163 * * * * 2345 583 * * * 15 0 * * * * * * 3711 0 0 L 16 * * * * 2687 * * 1422 * 2552 3719 * * 4112 * * * 2579 * * 16 0 * * * * * * 3711 0 0 A 17 2408 * * * * 5229 5497 * * 4322 * * 4010 5124 * 2407 3088 4951 * 1818 17 86 4112 * 0 * * * 3711 1000 0 A 18 1616 * * 5292 * * * 3249 * 3084 * * * * * * * 1234 * * 18 0 * * * * * * 3790 0 0 E 19 * * 5432 188 * * * * 4474 * * * * * 4207 * * * * * 19 0 * * * * * * 3934 0 0 K 20 * * * * * * * * 616 * 5325 * * * 2204 3243 * * * * 20 76 * 4280 * * * * 4045 0 0 E 21 * 4510 3317 1442 * * 4823 * * * * * 2931 5370 2751 3096 4985 * * * 21 0 * * * * * 0 4001 0 1119 A 22 5258 * 5075 1524 * 810 5257 * * * * * * * * * * * * * 22 0 * * * * 0 * 4001 0 1119 C 23 * 48 * * * * * 4938 * * * * * * * * * * * * 23 73 * 4348 * * * * 4045 0 0 P 24 3875 * 4002 4679 4571 2119 3831 * * * * 5372 2050 * 2849 3582 * * * * 24 81 5016 5400 0 * 0 * 4017 1000 1071 V 25 * * * 3739 4006 2919 3181 5255 5881 5256 * 3969 4624 4225 3136 4006 4595 3494 * 3523 25 60 * 4616 * * 0 * 4053 0 1000 C 26 5099 788 * * * * * * 4553 * * * 3595 3719 * 2867 4227 * * * 26 97 * 3943 * * 0 * 4058 0 1073 I 27 * * * 4114 * 5347 3443 2004 * 2610 3617 4713 * 3576 5349 * 4539 2819 * * 27 107 * 3804 * * 908 1098 4214 0 1577 T 28 2070 * * * 5192 * 5536 5018 * 4075 3959 * 5897 * 3110 3925 2486 3913 * 3120 28 0 * * * * 0 * 4199 0 2028 F 29 4666 * * * 4011 * * 1126 * * 5003 * * * * * 4657 1436 * * 29 48 * 4922 * * * * 4417 0 0 T 30 * * * 3634 * * 3994 * 4683 3970 * 1545 * 5690 4140 3968 2015 * * 5393 30 0 * * * * 0 * 4361 0 1000 T 31 * * * * * * * 3570 * 4922 * * * * * * 531 2392 * * 31 39 * 5245 * * * * 4417 0 0 S 32 * * 2477 * * * * * * * * * 3352 4588 4884 3319 961 * * 4919 32 0 * * * * * 0 4399 0 1000 I 33 1814 * * * * 3936 * 1455 3609 * * * * * * 3509 * 4199 4030 * 33 0 * * * * 0 * 4399 0 1000 C 34 * 0 * * * * * * * * * * * * * * * * * * 34 0 * * * * * * 4429 0 0 A 35 2375 * * 2705 4953 3624 * * 5178 * 4639 * * * * 2661 3499 * 2604 4020 35 0 * * * * * * 4429 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 4429 0 0 Y 37 * * * * 4639 * 3591 * * 4443 3513 * * 4455 1813 * 5007 * * 1389 37 0 * * * * * * 4429 0 0 C 38 * 0 * * * * * * * * * * * * * * * * * * 38 0 * * * * * * 4429 0 0 P 39 * * 2650 2452 3488 5221 * 6062 * 4058 4408 * 3849 3577 3855 5596 * 5750 * 2658 39 0 * * * * * * 4476 0 0 S 40 * * * * * * 4510 * * 5535 * * * * * 2065 524 * * * 40 0 * * * * * * 4476 0 0 M 41 * * * 3933 4501 * * * 2703 * 3182 * * 4654 1999 4922 5419 * 3115 2599 41 0 * * * * * * 4476 0 0 K 42 5641 * 1336 1292 * * * * 5572 * 5901 * * 3049 * * 5869 * * * 42 355 2345 5557 0 * * * 4476 2440 0 R 43 * * 5631 * * * * 2628 5858 2980 * * 1150 * 3732 4299 5056 4632 5213 * 43 204 3443 4654 0 * * 0 4471 1663 1000 V 44 5606 * 3434 4842 * * 5095 4833 * * * 2094 3618 * * 4914 3516 1509 * * 44 0 * * * * 549 1659 4471 0 1779 L 45 * 5487 * * 5668 5015 4911 3444 4700 1959 4227 * * * * 4650 * 3857 4091 1809 45 0 * * * * 0 * 4480 0 1000 P 46 * * * 2739 * 5483 * 3438 1817 4190 * * 4085 3183 3474 4907 5211 4715 * 4660 46 0 * * * * * * 4476 0 0 V 47 5901 * 4062 4866 3016 3889 3579 3580 * 5034 * 4715 2914 * * 1974 4214 5572 * * 47 31 * 5535 * * * * 4476 0 0 I 48 5515 * 4775 * 4072 * 5258 4745 4986 3511 * 3590 1103 * * 3874 5390 4876 * 5328 48 0 * * * * * 0 4455 0 1000 L 49 4193 * * 4586 2214 * 5808 4795 * 1887 4561 * * * 4253 5190 * 3896 5390 2731 49 0 * * * * * 0 4455 0 1000 P 50 4620 * 5328 5258 4396 2834 * 3456 2808 5390 * 5774 2640 * 3542 2827 5490 4835 * * 50 31 5544 * 1000 1000 0 * 4455 1000 1000 P 51 4681 * 4376 3033 * 5286 4536 * 2670 5674 * 4996 2135 3923 4180 3781 3683 6116 * * 51 50 4889 * 1000 1000 * * 4464 1191 0 M 52 4228 * 5650 5284 5549 * * 3459 * 3854 5636 4742 2881 * 3497 2283 * 3396 4940 3253 52 122 3931 6001 1142 870 * * 4424 1709 0 P 53 4464 * * 4558 3806 * 3583 3443 3102 4923 * 3694 3247 * * 2988 4747 5078 * 2832 53 42 5118 * 1000 1000 0 * 4461 1000 1000 Q 54 * * * 4693 * * 1521 * * * * 4940 * 785 * * * * * * 54 24 5930 * 1585 585 * * 4424 1000 0 R 55 * * 4332 4031 * 5413 3981 * 3652 5693 * 3408 3177 4215 2701 2922 3884 3450 * * 55 0 * * * * * * 4424 0 0 V 56 4076 * * * * 4400 * 3053 * * 3391 * * * * 4275 3422 909 * * 56 0 * * * * * * 4823 0 0 C 57 * 0 * * * * * * * * * * * * * * * * * * 57 0 * * * * * * 4823 0 0 T 58 * * * * * 5466 * 5441 * * 5168 2721 * 4654 * 3565 738 4291 * * 58 90 * 4050 * * * * 4823 0 0 Y 59 3823 * * * 3147 * 3704 * * * * * 5015 * * * * * * 497 59 0 * * * * 0 * 4739 0 1290 H 60 5092 * 2759 * * 2288 4446 * 2646 * * 3353 * 3580 2691 * 4395 5127 * * 60 0 * * * * * * 4823 0 0 E 61 4428 * 2139 1746 * 5117 * * 4446 * * 5148 * 4161 4808 3624 3145 4654 * * 61 0 * * * * * * 4823 0 0 L 62 * * * * 3838 * * 3761 5127 2415 * * * * 2978 6015 2704 2590 2966 4316 62 0 * * * * * * 4823 0 0 R 63 * * * 2839 5949 5740 * 3335 2994 * * * * 5248 1712 2962 5732 3432 * 5094 63 0 * * * * * * 4823 0 0 F 64 5879 * * * 3606 * 5572 * * 3528 * 5092 3610 5100 5127 * 3455 * 4654 1019 64 0 * * * * * * 4823 0 0 A 65 3602 * 5625 1812 * 4201 5857 5092 3484 3905 6025 * * 4115 2480 * * 3275 * * 65 0 * * * * * * 4823 0 0 S 66 * * * * * * * 5055 5411 * * * * 5117 3132 2754 749 4050 * * 66 0 * * * * * * 4823 0 0 V 67 3503 * * 5153 5117 * * 2768 4007 4864 6042 * * * * * 4419 1045 5411 4593 67 0 * * * * * * 4685 0 0 R 68 5491 5912 5411 2713 4095 * 4679 4148 3482 * * * * 2974 2476 5601 3058 4450 * 4374 68 0 * * * * * * 4685 0 0 L 69 * * * * 5970 * * 3042 * 455 4263 4062 * * * * * 5577 * * 69 0 * * * * * * 4502 0 0 P 70 * * 5124 3488 * * 5842 * 4718 * * * 870 4441 3511 3407 5265 * 5291 * 70 0 * * * * * * 4502 0 0 G 71 * * 2270 * * 1247 4514 * * * * 1990 * * * 5570 * * * 4188 71 0 * * * * * * 4317 0 0 C 72 * 0 * * * * * * * * * * * * * * * * * * 72 38 5272 * 2585 263 * * 4131 1000 0 P 73 2892 * 2522 3053 5022 * 5888 * * 5734 * 4781 1361 4739 * 5948 * 5328 * * 73 0 * * * * * * 4131 0 0 P 74 5856 * 3489 3243 5552 5022 4884 4486 * 4576 * 5092 1260 * 4605 4906 * 3406 * * 74 0 * * * * * * 4131 0 0 G 75 * * 2692 * * 705 2595 * * * * 5856 * * * * * * 5948 4925 75 23 * 5961 * * * * 4131 0 0 V 76 2880 * * 5259 * * * 4164 * * * * 4918 * * 4044 5719 579 * * 76 49 * 4905 * * * 0 4127 0 1000 D 77 6172 * 920 3200 * * * * * 5241 * 2148 * 5307 5236 * 4473 * * * 77 0 * * * * * 0 4100 0 1290 P 78 * * * * * * * * * * * * 336 * 2713 4181 * * * * 78 198 2960 * 1585 585 * 0 4100 1918 1290 M 79 5846 * * * 2713 * 4164 3614 5119 3001 6068 * * * * 4358 1851 3129 * 3577 79 48 4927 * 1585 585 1435 666 4100 1342 1290 V 80 * * * * 1322 * 5103 * * 4699 * * * * * * * 2501 * 1490 80 29 * 5666 * * 0 * 4123 0 1119 S 81 5473 * 5287 3414 5149 * 2995 4108 5914 * * 5996 * 6805 * 3384 1429 3602 * 4167 81 0 * * * * 0 * 4132 0 1000 F 82 * * * * 2886 * * 3791 * 5172 * * * * * * * 3648 * 546 82 0 * * * * * * 4134 0 0 P 83 5156 * * * 4101 * 5511 5068 * 3805 4218 * 848 * 5118 * 3673 3756 * * 83 0 * * * * * * 4134 0 0 V 84 5121 * 4930 2645 * * * 5026 * * * 3099 * 5423 * * * 718 * * 84 0 * * * * * * 4134 0 0 A 85 143 * * * * * * * * * * * 3404 * * * * * * * 85 0 * * * * * * 4134 0 0 L 86 4394 * * 4341 * * * 3854 3315 1302 5423 * * * 4152 * 2919 3105 * * 86 0 * * * * * * 4134 0 0 S 87 * * * 4770 * 4394 * * * * * 3253 * * 3456 529 5217 * * * 87 0 * * * * * * 4134 0 0 C 88 * 0 * * * * * * * * * * * * * * * * * * 88 0 * * * * * * 4134 0 0 H 89 4443 * 3774 2801 * 5217 2839 * 2966 * * 3899 * 3889 2711 3436 * 4490 * 5737 89 0 * * * * * * 4134 0 0 C 90 * 0 * * * * * * * * * * * * * * * * * * 90 0 * * * * * * 4134 0 0 G 91 3470 * 4116 * * 2372 5363 5615 4351 * 5202 * * 3452 3313 2281 2833 * * * 91 0 * * * * * * 3999 0 0 P 92 3525 * * * * * * * 2467 2981 4130 3925 5155 3424 3357 * 2895 2949 * * 92 0 * * * * * * 3999 0 0 C 93 * 46 * * * * * * * * * * 4980 * * * * * * * 93 0 * * * * * * 3999 0 0 R 94 5346 * 2893 * * * 5335 * 3088 * * 2213 4186 4954 4030 1900 4954 4873 * * 94 0 * * * * * * 3942 0 0 L 95 5335 * * * * 5413 * 4251 * 5047 3064 * 3998 * 5215 2124 1327 * * 4967 95 0 * * * * * * 3942 0 0 S 96 3260 * 1589 3797 4954 4187 4536 * 4618 * * 5937 * 4516 4383 2605 4384 * * * 96 0 * * * * * * 3942 0 0 S 97 * * 3573 4157 * * 4874 4891 * * * 3011 * 4618 4939 2787 1664 * 5166 3234 97 0 * * * * * * 3942 0 0 T 98 3616 * 4305 * * * * 5362 * * * 4939 * * * 2186 758 * * * 98 0 * * * * * * 3942 0 0 D 99 4920 * 1102 2696 4905 * * * * * * 5018 * * 4605 2272 * * * 4861 99 0 * * * * * * 3825 0 0 C 100 * 0 * * * * * * * * * * * * * * * * * * 100 0 * * * * * * 3825 0 0 G 101 4609 * 3951 2339 4375 2314 * 3996 * * * * * * * * 1663 3861 * * 101 69 4422 * 572 1611 * * 3589 1479 0 G 102 4275 * * * 3534 1707 3422 4432 5144 * * 5153 4638 4840 4810 * 5667 2125 * * 102 0 * * * * * * 3814 0 0 P 103 4972 * 4840 2648 3714 5153 * * 4159 3077 4638 * 2904 4037 2730 4974 5144 * * 4340 103 0 * * * * * * 3814 0 0 R 104 2696 * * * * 3009 3189 * 3569 * * * * * 2357 1709 5244 * * * 104 0 * * * * * * 3814 0 0 T 105 * * 4148 4839 * * 5424 3985 4250 1593 2677 * * * * 2650 4905 4327 * 4670 105 0 * * * * * * 3980 0 0 Q 106 2631 * 4329 2816 * 2540 3090 * 5175 * * * * 2684 2802 5021 * * * * 106 0 * * * * * * 3755 0 0 P 107 * * 4678 * * 3915 * * 4169 5302 4329 * 792 * * 4558 2795 * * * 107 83 4169 * 0 * * * 3755 1000 0 L 108 2977 * 2243 * * * * 4703 * 3328 4816 2485 4366 4270 4678 2934 4666 * * * 108 45 5021 * 1000 1000 * * 3755 1000 0 A 109 4725 * 4864 * 2473 * 4666 * * 5095 * * * 4703 2525 2896 4016 3756 * 2346 109 137 4678 4270 0 * * * 3755 1000 0 C 110 * 0 * * * * * * * * * * * * * * * * * * 110 0 * * * * 0 * 3356 0 1000 D 111 * * 3067 * * 3410 * * * * 2535 * * * * 1016 3063 * * * 111 0 * * * * * * 3499 0 0 H 112 2617 * 4433 * * * 2263 * 1029 * * * * * * 4502 4380 * * * 112 0 * * * * * * 3265 0 0 P 113 * * * * * * * * * * * * 386 2488 4146 * * * * * 113 0 * * * * * * 3265 0 0 P 114 * * * * * * * * * * * * 3383 1470 880 * * * * * 114 0 * * * * * * 2491 0 0 L 115 * * * * 2950 * * 2680 2379 937 * * * * * * * * * * 115 0 * * * * * * 2248 0 0 P 116 * * * * * * * * * * * * 367 2153 * * * * * * 116 0 * * * * * * 1978 0 0 D 117 * * 0 * * * * * * * * * * * * * * * * * 117 0 * * * * * * 1275 0 0 I 118 * * * * * * * 0 * * * * * * * * * * * * 118 0 * * 0 * * * 1000 0 0 //