HHsearch 1.5
NAME  c6nugA_
FAM   
FILE  c6nugA_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c6nugA_.a3m 
DATE  Sat Feb  8 08:22:16 2020
LENG  26 match states, 26 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.1 
EVD   0.4935  3.5545 
SEQ
>ss_dssp
CCSSSCCTTCCCEEECTTSCEEEC--
>sa_dssp
EDEEEECEEEEEECEEEEEDEBCD--
>ss_pred
CCCEECCCCCCEEEEECCCCEECCCC
>ss_conf
98510477882245752786000039
>Consensus
cdxevscpxgxtccrlqsgxwgccxx
>c6nugA_
CDMEVSCPDGYTCCRLQSGAWGCCXX
>UniRef50_P28797(283-306:591) Granulin-7 (Fragment) n=4 Tax=Theria RepID=GRN_CAVPO   E=0.0007 s/c=1.88 id=80% cov=96%
CDQEVSCPEGQTCCRLQSGKWGCC--
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
C 1    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1122	0	0	

D 2    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1122	0	0	

M 3    *	*	*	*	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1122	0	0	

E 4    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1122	0	0	

V 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	5
       0	*	*	*	*	*	*	1122	0	0	

S 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	6
       0	*	*	*	*	*	*	1122	0	0	

C 7    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1122	0	0	

P 8    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1122	0	0	

D 9    *	*	1000	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1122	0	0	

G 10   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1122	0	0	

Y 11   *	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	1000	11
       0	*	*	*	*	*	*	1122	0	0	

T 12   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	12
       0	*	*	*	*	*	*	1122	0	0	

C 13   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1122	0	0	

C 14   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1122	0	0	

R 15   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	15
       0	*	*	*	*	*	*	1122	0	0	

L 16   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1122	0	0	

Q 17   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1122	0	0	

S 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	18
       0	*	*	*	*	*	*	1122	0	0	

G 19   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1122	0	0	

A 20   1000	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1122	0	0	

W 21   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	21
       0	*	*	*	*	*	*	1122	0	0	

G 22   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1122	0	0	

C 23   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1122	0	0	

C 24   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1122	0	0	

X 25   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	25
       *	*	*	*	*	*	*	1000	0	0	

X 26   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	26
       0	*	*	0	*	*	*	1000	0	0	

//