HHsearch 1.5 NAME c6nlqA_ FAM FILE c6nlqA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6nlqA_.a3m DATE Sat Jan 18 08:30:59 2020 LENG 105 match states, 105 columns in multiple alignment FILT 125 out of 157 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.4423 0.4601 SEQ >ss_dssp CCEEEEECCCSCHHHHHHHHHHHHHHSTTCEEEEEEECGGGEEEEEEECCTTSCTTCCHHHHHHHHHHHTTCEEEECSSEEEEEEECSCHHHHHHHHHHH HHHHC >sa_dssp EDCDCDCCECECCECACEDADDDBDECEDBAAABAADCEEDDABAAACBBEECDEEACADCAADCAADEBECECDEDDDDBCACBDCEDDECACDCADDC AEECD >ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHH HHHHC >ss_conf 9610000113358999999999996278847999986699948999973503126846999999999761988899864642158987989999999999 98509 >Consensus gpVIvxxvsxxsmxxLxkxvxxLxkkxxxxxvxLxsxxxxxkxxxxxxvxxxxxxxxxAxxxxxxxxxxxxgxggGxxxxaqxxgxxxxxxxalxxaxxx xxxxl >c6nlqA_ GPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSRVVAQGTGSTTDLEAALSIAQTY ALSQL >UniRef50_A1KLQ3(803-895:904) Alanyl-tRNA synthetase n=82 Tax=Actinomycetales RepID=SYA_MYCBP E=0.0002 s/c=0.51 id=19% cov=85% -------MTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVEGRGGGKADLAQGSGKNpTGIDAALD---- ------ >UniRef50_C7M4Z2(784-877:877) Alanyl-tRNA synthetase n=20 Tax=Bacteria RepID=C7M4Z2_CAPOD E=1e-07 s/c=0.61 id=18% cov=38% ------------VATLKDLAFELGNEVKNAFIFFASAHEEGKALLLCYINK------------------------------------------------- ----- >UniRef50_B7G5M3(868-955:955) Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G5M3_PHATR E=2e-10 s/c=0.76 id=22% cov=83% --------------VAKSVMTAFGKQVKDKALLLVTADPEADRFMVIAGAPKAMKDLNCKAWIEAATDGLDAKGGGKPDSAQYQVSGVEaVDTVLEKARK F----- >UniRef50_Q0W0A4(294-388:390) Alanyl-tRNS synthetase-related protein n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W0A4_UNCMA E=0.0004 s/c=0.48 id=20% cov=42% -PVIRVAYEDKSFNDLMSLSKYLLQA--GDFIMILASVPEKRLLFA------------------------------------------------------ ----- >UniRef50_A6CJS2(309-390:404) Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CJS2_9BACI E=1e-06 s/c=0.66 id=18% cov=38% --VVKKVLQHRSMADMQKMARTILQTHE--VVVLLVSENGDKL--------------------------------------------------------- ----- >UniRef50_B1I370(772-875:880) Alanyl-tRNA synthetase n=9 Tax=Firmicutes RepID=SYA_DESAP E=6e-13 s/c=0.73 id=22% cov=99% --ILATSVRARDMAELRSMLDLLRERLGSAVIVLGSAVNGKVSLVASVSRDLVARGLHAGAIIKEAAAVAGGGGGGRPEMAQAGGKNPeKLTEALEKARQ VVLRRV >UniRef50_A5CD03(791-873:891) Alanyl-tRNA synthetase n=16 Tax=Rickettsieae RepID=SYA_ORITB E=7e-10 s/c=0.78 id=18% cov=76% --LVYKNIEDYDLQIVRKAVSNTTKNIKN-LVMVVISNNDKKNTIIIGVSDNITNKIQANNLVKEIINYLGGSGGGSATLAQ------------------ ----- >UniRef50_C0ZE75(302-402:403) Truncated alanyl-tRNA synthetase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZE75_BREBN E=2e-06 s/c=0.53 id=23% cov=86% --LIMCTFSDKTIQQLQQFAQLATALAPDA-ICLLAATTEDKMQIVFGRGQDV--NVAINQVLKETLPIINGKGGGNPAMAQGGGQAvVDAEEVL----- ------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2623 0 0 P 2 * * * * * 2614 * * * * 3072 3309 697 * * * * * * * 2 0 * * * * * * 4145 0 0 L 3 * * * * * * * 2826 * 1633 4716 * * * * * * 1004 * * 3 0 * * * * * * 6095 0 0 I 4 * * * * 4568 * * 1161 * 1917 4826 * * * * * * 2246 * * 4 0 * * * * * * 6204 0 0 V 5 2812 * * * 5318 * * 3596 5201 3273 4698 * 5100 * 4513 3928 3351 1705 * 4746 5 0 * * * * * * 6433 0 0 D 6 2078 4698 2189 3220 * 5242 * 5596 2930 * * 3173 * 4553 * * 5477 4513 * * 6 0 * * * * * * 6433 0 0 T 7 3105 * * 5121 * * 5064 4553 4295 3190 4137 4746 * 3116 2418 4341 3011 4261 * * 7 37 5318 * 0 * * * 6433 1000 0 V 8 * * * 4364 2567 * * 3171 3722 2506 4442 * * * * * 4966 1722 * 4690 8 0 * * * * * * 6830 0 0 S 9 4689 * 3776 2623 * * * * 2718 * * 4195 * 2905 5589 1999 3122 * * * 9 0 * * * * * * 6859 0 0 A 10 1975 * 2505 * 5021 3492 5337 5184 * 5001 5427 3457 * 5200 * * 3079 3232 * * 10 63 4555 * 0 * * * 6859 1084 0 E 11 2736 * 1989 4502 * * * * 2980 5927 5354 3083 5303 5625 2914 4973 5317 * * 4922 11 30 5626 * 2000 415 * * 6747 1000 0 S 12 * * 1815 3854 * 5022 * * * * * 3565 * * * 1080 4096 * * * 12 26 * 5780 * * * * 6821 0 0 L 13 3002 * * * 5180 * * 2940 * 2107 1876 5053 5373 * 5174 5401 4571 3944 * * 13 116 5000 4435 1000 1000 0 * 6879 1000 1000 S 14 3683 * 2517 3213 * * * * 2204 * * 5135 * 2580 3890 2927 5160 * * * 14 52 * 4821 * * * 0 6716 0 1204 V 15 2281 * 3241 2694 * 5348 * 4978 * * * * 5126 5002 * 3019 3483 2601 * 4638 15 0 * * * * 1217 811 6931 0 1733 L 16 4359 * * * * * * 5061 * 497 3405 * * * * * 4967 4141 * 5080 16 0 * * * * * 0 6992 0 1204 V 17 5560 * 5144 * 6261 * * 3532 2322 3867 3524 4535 * 3451 1975 5852 5465 3906 * * 17 26 5784 * 0 * 0 * 7439 1000 1204 K 18 4423 * 3307 2868 * 4849 * * 1602 4810 * 5090 * 4170 4221 2980 4316 * * * 18 0 * * * * * * 7499 0 0 V 19 3291 7073 4450 3884 4593 * * 3787 * 2048 3595 * * * * 5207 2490 2906 * * 19 18 * 6346 * * * * 7499 0 0 V 20 2199 * * * * 5028 * 3164 * 2053 4054 * * 4876 * 4348 5149 2137 * * 20 0 * * * * * 0 7496 0 1000 R 21 5540 * 1755 5095 5553 5539 * 4615 2485 5670 * * * 3063 3486 6061 3610 3937 * * 21 0 * * * * * 0 7496 0 1000 Q 22 3408 * 2637 4195 * 4883 * 5542 3329 3081 4894 5548 * 2327 4003 4423 4607 * * 6266 22 10 7139 * 0 * 0 * 7490 1000 1000 L 23 5007 * * * 4358 6614 * 2593 4237 1035 * 4512 * * 4348 * 5051 3951 6031 * 23 24 5910 * 0 * * * 7504 1000 0 C 24 3707 5155 * 4997 * 3241 5556 4671 2304 3839 6022 6828 * 5172 2252 4393 3327 5946 * * 24 13 * 6760 * * * * 7504 0 0 E 25 3810 * 2580 2577 * 4666 6647 * 1967 * 6201 4640 * 3402 6250 3387 4977 * * * 25 22 6023 * 1585 585 0 * 7592 1000 1000 Q 26 3880 * * 2834 5349 * 5370 * 1906 4484 * 3801 * 2463 4269 3406 5476 * * 6675 26 74 * 4324 * * * * 7637 0 0 A 27 3488 5459 4257 3211 4745 * 4549 3797 3366 2078 4661 4966 * * * 3747 4827 4387 * 6248 27 9 * 7262 * * * 0 5831 0 2628 P 28 * * 4940 5791 * 2617 * 6323 2631 5782 6814 4363 1447 4585 6415 3542 5752 * * 6371 28 33 * 5454 * * 330 2292 5738 0 2937 S 29 3973 * 2927 3332 * 4334 * * 2860 * 6119 3685 6068 3981 5048 1776 5286 * * * 29 19 * 6250 * * 445 1914 5744 0 2619 T 30 2002 * 5304 * * 2790 * 5219 3808 6007 5690 5348 6602 5620 5028 2652 2461 5594 * * 30 26 * 5813 * * 0 * 5607 0 1741 S 31 2015 6568 * * 4663 4227 * 2403 * 3431 * * 3939 * * 4654 7197 1968 * * 31 14 6730 * 1585 585 0 * 5594 1000 1000 V 32 2363 * * * 6582 7187 * 2275 * 3443 * * * * * * 5413 1166 * 5589 32 0 * * * * * * 5655 0 0 L 33 3766 3930 * * 5327 * * 2634 * 2051 2691 * * * * 5671 * 1977 * 7589 33 0 * * * * * * 5655 0 0 L 34 * * * * 2970 5305 * 3093 * 642 * 6107 * * * * * 3745 * * 34 11 * 7050 * * * * 5655 0 0 L 35 2566 7170 * * 3008 3047 * 3844 * 1782 6712 6517 * * * 4431 * 2921 5667 * 35 10 * 7170 * * 0 * 5658 0 1000 S 36 2870 5309 * 5723 * 2883 * 3919 * 5330 * 5222 * 6795 * 1394 2743 5221 * * 36 88 * 4080 * * 0 * 5560 0 1000 P 37 2364 * 5004 3354 * 5685 4912 4540 4232 5328 5913 * 3805 5801 4989 3040 2963 3111 * * 37 111 5345 4340 0 * 0 * 5491 1000 2880 Q 38 3357 * 2477 2093 * 6956 5655 4286 6888 5854 * 4097 5514 3682 5279 3712 5130 3623 * 6207 38 60 * 4627 * * 0 * 5455 0 2261 P 39 3892 * 4075 2209 * 6524 8044 5712 3417 * 5940 3219 3254 4130 * 2705 3816 5662 * * 39 120 4297 5095 0 * 0 * 5464 2080 1950 M 40 4614 * 2204 1970 * 2629 * * 5470 * 4354 3460 * 4154 * 3875 4699 * * * 40 119 4429 4923 236 2728 499 1774 5473 2099 2047 G 41 5084 * 3208 4988 * 1152 5803 * 2371 * * 6540 5230 6390 4528 4618 4781 * * * 41 0 * * * * 0 * 5456 0 2880 K 42 4334 * 5091 * * * * * 672 * * 5252 5303 5619 3921 * 6256 2809 * * 42 36 5330 * 454 1889 * * 5453 1889 0 V 43 3476 * * * 3988 * * 2814 5362 2791 5249 5702 5813 * 5707 3843 4556 1758 * 4448 43 14 * 6696 * * * * 5453 0 0 L 44 3328 4696 * * 3939 6576 4104 2820 * 2842 5250 4182 * 2940 7279 3682 4097 4251 * 4651 44 16 * 6542 * * * 0 5297 0 1000 C 45 5035 2861 * * 3740 * 5524 2492 * 1621 4491 * * * * * * 2482 6792 * 45 0 * * * * * 0 5293 0 1654 A 46 1952 3617 * * 4737 * * 3195 * 2365 6105 * * * * * 5051 2019 * 5163 46 36 6899 5941 1000 1000 * 0 5290 1000 1654 C 47 1703 2644 * * 5825 5039 * 3184 * 5786 4142 5511 * 6453 5837 3283 5286 3049 * * 47 19 6282 * 2322 322 * 0 5269 1000 1760 Q 48 2329 6073 * * 4981 1763 * 6194 5678 4029 5012 * * 4664 4781 4183 5176 3146 5899 4441 48 34 * 5412 * * 1281 765 5269 0 1760 V 49 4545 6512 * 6461 6762 4436 * 5179 5158 4642 * 5809 4402 * 4154 3873 3261 1030 * * 49 21 * 6082 * * 1734 516 5264 0 1651 A 50 3430 * 4442 4731 * 2960 * * 3597 * * 7386 2090 5139 7090 2610 2539 * * * 50 0 * * * * 1034 967 5301 0 2147 Q 51 3676 * 3182 3081 * 4614 5429 * 1432 4649 * 6539 4148 3382 6498 4478 * * * * 51 81 7059 4411 0 * 963 1038 5331 1000 1640 G 52 2596 6160 1781 3741 * 3758 * * 4655 3742 * 3715 5195 * * 3868 5289 3858 * * 52 64 5356 5713 0 * 925 1079 5285 1541 2673 A 53 2059 4836 * 5374 * 4636 * 4640 6693 2241 5662 7065 * 4654 6087 4263 5927 2005 * * 53 71 4995 5884 1000 1000 1646 555 5367 1502 2186 M 54 3623 * 4888 4366 * 3705 5717 4130 4211 4424 3574 6690 * 4392 * 2198 2629 4005 * * 54 46 4998 * 0 * 576 1602 5385 2142 2091 P 55 3310 * 4402 4317 * 3472 5197 6837 1652 5349 * 4242 4043 6038 2937 4114 5986 * * * 55 73 4343 * 0 * 0 * 5404 2236 1000 T 56 4396 * 4079 4679 * 1255 6056 * 2623 * * 4316 6889 6222 3803 4195 4064 * * * 56 33 * 5485 * * * * 5174 0 0 F 57 5602 * * * 2502 * 6430 2771 * 1548 5088 * * 6623 * * 5585 2312 * 4612 57 0 * * * * 0 * 4833 0 1000 T 58 5979 * 3443 5368 * * 3008 * 2330 5947 * 2475 6059 3564 5687 2769 3589 * * * 58 0 * * * * * * 5174 0 0 A 59 231 3799 * * * * * 4441 * * 6001 * * * * * * 6117 * * 59 19 * 6293 * * * * 4895 0 0 E 60 * 5682 5955 4572 * 1392 * 5321 2726 * * 3050 * * 4250 3158 5925 3977 * * 60 0 * * * * * 0 4895 0 1000 A 61 2421 * 2348 2346 * * * 6169 3030 * 6024 4072 * 3797 5749 4164 4663 5429 * * 61 0 * * * * 0 * 4895 0 1000 W 62 6021 * * * 4088 * * 2073 * 1880 6049 * * * * * * 3139 1796 * 62 0 * * * * * * 4895 0 0 A 63 2239 * * * 5460 * * 2347 * 2836 4018 * * * * 5184 * 1558 * * 63 0 * * * * * * 4770 0 0 L 64 4069 * 4318 4369 * 4946 * * 1157 3989 * 3898 * 3629 4025 3925 6491 6427 * * 64 0 * * * * * * 4770 0 0 A 65 2650 * 5489 2260 6349 5145 4935 4400 3463 3993 * * 4652 3458 * 3302 4212 4337 * * 65 0 * * * * * * 4438 0 0 V 66 2367 5260 * * 5642 * 5506 2408 * 2738 5538 * * * * 6398 5950 1514 * * 66 0 * * * * * * 4454 0 0 C 67 1355 3400 * * 4244 4574 * 6749 * 2713 4998 6386 * * * 3453 4278 3802 * * 67 18 * 6323 * * * * 4454 0 0 S 68 3007 * 3290 2900 * 3670 5915 * 2752 * * 5433 3277 4159 5644 2767 5564 5292 * * 68 0 * * * * * 0 4200 0 1000 H 69 3587 * * 3691 * 4708 4271 2931 4012 2941 4745 * 4874 4510 4124 5448 4608 2837 * 4338 69 0 * * * * * 0 4200 0 1000 M 70 5809 3930 * * 3992 * * 2270 * 1903 3278 * * * * 6827 6255 2269 * 4426 70 58 4654 * 0 * * 0 4208 1702 1000 G 71 6388 * 2999 3129 * 834 5247 * 4504 * * 3348 * * * 5702 * * * * 71 0 * * * * 0 * 4084 0 1000 G 72 4112 * * * 5830 142 * * 5747 * * * * * * * * * * * 72 0 * * * * * * 4106 0 0 K 73 5303 * * * * 2728 * * 937 * * 2842 * * 3785 3482 * * * * 73 0 * * * * * * 4106 0 0 A 74 3122 * * * * 276 * * * * * * * * * 4752 * * 5510 * 74 0 * * * * * * 4106 0 0 W 75 * * * 4969 4875 138 * * * * * * * * * * * * 5306 * 75 0 * * * * * * 4106 0 0 G 76 * * * * * 0 * * * * * * * * * * * * * * 76 0 * * * * * * 4106 0 0 S 77 4681 * 6620 * * 6666 * * 1488 * * 3341 * 5550 1663 2750 * * * * 77 0 * * * * * * 4106 0 0 R 78 3328 * 3011 3544 * * * * 4373 * * 5362 1049 4140 5306 6122 6196 5327 * * 78 0 * * * * * * 4106 0 0 V 79 6390 * 1449 3906 5175 * 5220 4217 4220 6053 5446 3634 5309 5826 6369 4393 3185 4749 * 5327 79 0 * * * * * * 4106 0 0 V 80 6072 * * * 1751 * * 5122 5964 2757 2279 * * 4720 7049 3498 3742 4697 6838 4909 80 0 * * * * * * 4106 0 0 A 81 173 5546 * * * * * * * * * * * * 5309 5362 * 4570 * * 81 0 * * * * * * 4106 0 0 Q 82 6538 * * 4752 * * * * 4969 * 5148 * * 330 4197 5550 5604 * * * 82 0 * * * * * * 4106 0 0 G 83 1644 * * * * 765 * 5277 * * * * * * * 5078 * * * 4798 83 0 * * * * * * 4095 0 0 T 84 4938 5344 * * * 825 * * 4470 * * * * 3628 4508 3389 4053 4245 * * 84 15 6565 * 0 * * * 4022 1000 0 G 85 4279 6026 * * 4969 331 * * * 5236 * * * * * 4986 6389 4792 * * 85 0 * * * * * * 4022 0 0 S 86 6311 * 4426 3859 * 6536 * * 1777 4766 * 3574 3403 4345 4708 2620 3264 * * * 86 41 5140 * 0 * * * 4505 1763 0 T 87 2719 * 2280 3796 6673 4850 * 5839 3088 * * 2515 * 5001 5386 4628 4733 4161 5228 * 87 254 2629 * 0 * * * 4474 3810 0 T 88 3597 * 5017 3893 * 5091 * 5335 5795 4312 * 5325 2059 6787 * 3093 2752 2670 * * 88 555 1648 * 75 4298 * * 4474 3504 0 D 89 5645 * 2581 3744 * 4016 6620 * 1628 * * 2594 4639 6064 4799 3538 * * * * 89 262 2590 * 111 3751 * * 4418 3804 0 L 90 5958 * * * * * * 2393 4409 1324 5762 * * 4704 5202 * 5421 2189 5612 * 90 0 * * * * * * 4530 0 0 E 91 3702 * 1893 1762 6295 * * * 3965 6496 5202 3707 4711 4861 * 5882 3681 * * * 91 0 * * * * * * 4530 0 0 A 92 2904 * 2552 1081 * 5521 * * 6171 * 6304 6854 * 4141 5045 4755 4564 * * * 92 0 * * * * * * 4519 0 0 A 93 630 4664 * * 5441 5121 * 5778 * 4595 5754 * * * * * 5369 2642 * * 93 0 * * * * * * 4484 0 0 L 94 3354 * * * 5307 * * 2749 * 713 5119 * * * * * * 3488 * * 94 0 * * * * * * 4484 0 0 S 95 3354 * 3536 1867 * 5595 * * 3152 4040 * 3690 * 2569 * 3972 5319 6256 * * 95 0 * * * * * * 4472 0 0 I 96 2839 * 6917 5605 5670 * 4691 3467 1947 2994 * 5335 * 5221 4637 4538 3835 3645 * 6264 96 48 4943 * 1585 585 * * 4465 1000 0 A 97 505 * * * * 4826 * 4589 * 5027 * * * * * 3757 * 3132 * * 97 0 * * * * * * 4465 0 0 Q 98 4869 * 4338 2792 5377 * 5362 4017 2465 5614 5002 4874 5435 5211 1791 4946 6547 6290 * * 98 0 * * * * * * 4484 0 0 T 99 4061 * 3948 1479 * * * * 2905 * * 4713 * 3189 5682 2907 4205 5147 * * 99 0 * * * * * * 4560 0 0 Y 100 * * * 3463 1585 * * 3835 * 3843 3561 * * 5447 * 5468 * 5052 2898 2818 100 0 * * * * * * 4506 0 0 A 101 1312 * * * * * * 3776 * 2428 * * * 4529 * * * 1761 * * 101 0 * * * * * * 4452 0 0 L 102 2601 * * * * 4753 4434 3874 3261 2266 4867 6088 * 3548 3768 * 4423 3096 * * 102 0 * * * * * * 4388 0 0 S 103 4650 * 4535 2871 * 5050 * * 3319 4002 * 2677 * 2950 3932 2081 * * * * 103 0 * * * * * * 4261 0 0 Q 104 3285 * * * * * * * 1625 * 4256 5028 * 2011 2358 5653 5198 * * * 104 0 * * * * * * 4157 0 0 L 105 * * * * * * * 2922 * 339 4216 * * * * * * 5419 * * 105 0 * * 0 * * * 4132 0 0 //