HHsearch 1.5 NAME c6lrrQ_ FAM FILE c6lrrQ_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6lrrQ_.a3m DATE Sat May 16 08:26:15 2020 LENG 106 match states, 106 columns in multiple alignment FILT 74 out of 78 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.3940 -0.5267 SEQ >ss_dssp CCCCCCCCCCSSSCSSCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCTTSCCCEECSCCCTTCCCHHHHHHHHHHHHTTCSSSEEEEEEECSSSSCEEEE EEEECC >sa_dssp EEEEEEDEDCCEDBEDEEBDEEDBCECADDACDDDCBAAABBBEDBCEEEEEBDDBEECBEECEDBEEABDCADCADEDCEDCCABAAACCEEEEDDDBC ABBCEE >ss_pred CCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEE EEEECC >ss_conf 9646865320010017899988999999999855981267644888756530111237556888999999999999985987608999971887338999 875268 >Consensus xxxxxxxxxxetxsylpxltxxxIxkQVxyllxqGxxxxiExadxxxxxxxyWxmwklPmfxxxdxxqVlxEiexcxxxxpxxYVRligfDxxxxxrxxx xivxRP >c6lrrQ_ MQTLPKERRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFNEVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILS FIVHKP >UniRef50_Q7XYK5(77-185:252) Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2 (Fragment) n=6 Tax=Chlorarachniophyceae RepID=Q7XYK5_BIGNA E=2e-36 s/c=1.40 id=42% cov=93% --------KYETMSYTNVFTEQDIAAQINYMIQNGLIPCVEFDKggqifrehsrmPGYYDGRYWTMWKLPMFGATDAGAVMREIAECKQNNPDSFIRVLG FDNIKQVQCMGFLASRP >UniRef50_B8HQJ5(438-531:650) Carbonate dehydratase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HQJ5_CYAP4 E=8e-14 s/c=0.83 id=24% cov=87% -------------SYAPVPSggiEADVVQQVRQLIAQGCQIGLEFADERRFKTSSWQ--SGATLQTRQESEVFAALESFLAEHAKDYVRLIGIDPKGKKR VAETIVHRP >UniRef50_B4WNX1(500-581:872) Ribulose bisphosphate carboxylase, small subunit, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNX1_9SYNE E=1e-05 s/c=0.62 id=24% cov=27% ------------------------------------------------------------------------------QNADKYVRIFGVNIQTKTRGAA TTIHKP >UniRef50_Q59102(7-103:139) Ribulose bisphosphate carboxylase small chain, plasmid n=219 Tax=cellular organisms RepID=RBSP_RALEH E=4e-27 s/c=1.26 id=40% cov=91% -----------TFSFLPDLTDAQITSQLEYCLNQGWAVGIEYTDDPHPRNTYWEMFGLPMFDLRDAAGILLEINNARSTFPNHYIRVTAFDSTHTVEsvV MSFIVNRP >UniRef50_C5SC11(32-118:119) Ribulose bisphosphate carboxylase small chain n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SC11_CHRVI E=1e-14 s/c=0.93 id=25% cov=78% -----------------------MLGQLEHCLHRGCIIAIEHAERVQAAYTAWEPWEPPSCYSGDMAAVHGAIARCRQAHCDHHIRLSVEDVSYHSR-LA LMVHRP >UniRef50_O30711(457-541:661) Carbon dioxide concentrating mechanism protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=O30711_SYNP2 E=2e-15 s/c=0.98 id=18% cov=78% ----------------------DVAGQIAALASQGCSFTAEHASTRRFKTQSW--LGAGFVEGHSANQILANIQAIAAQFPNEYVQLIAVDPNSKTRAAE IIIQRP >UniRef50_Q56260(14-114:118) Ribulose bisphosphate carboxylase small chain n=36 Tax=Bacteria RepID=RBS_THIDA E=3e-30 s/c=1.31 id=37% cov=96% ----PASRKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIEHTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQGAA MVIYR- >UniRef50_A9RL69(1-50:60) Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RL69_PHYPA E=5e-07 s/c=1.11 id=31% cov=48% --------------------------------------------------------KLSMLKCHDSTYVLKEIEKYKKTFFTYYVCILGFDNVNHVQISR FLAAKP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1804 0 0 Q 2 * * * * * * * * 1906 * * * * 649 3391 * * * * * 2 0 * * * * * * 1804 0 0 T 3 * * * * * * * * * * * * * * * * 1368 707 * * 3 0 * * * * * * 1804 0 0 L 4 * * * * * * * * * 1368 * * * * * * * * 707 * 4 0 * * * * * * 1804 0 0 P 5 * * * * * * * * * * * * 0 * * * * * * * 5 125 3590 * 1000 1000 * * 1977 1000 0 K 6 2263 * * * * * * 2720 1578 * * 3590 2334 * * * * 5413 * * 6 374 2132 * 1000 1000 * * 1977 1288 0 E 7 * * * 1039 * * * * 2642 * * 2728 * * * 2833 4021 * * * 7 346 2229 * 1000 1000 * * 1977 1304 0 R 8 * * * * * * * * 855 * * * 4434 * 1319 * * * * * 8 0 * * * * * * 2326 0 0 R 9 * * * * 3943 * * * 762 * 3564 * * * 2114 * * * * 5080 9 0 * * * * * * 2571 0 0 Y 10 * * * * 578 * * * * * * * * * * * * * * 1599 10 0 * * * * * * 2665 0 0 E 11 * * * 109 * * * * * * * 3774 * * * * * * * * 11 0 * * * * * * 2723 0 0 T 12 3054 * * * * * * * * * * * * * * * 185 * * * 12 0 * * * * * * 2843 0 0 L 13 * * * * 839 * * * * 1544 3348 * * * * * * * * * 13 0 * * * * * * 3015 0 0 S 14 * * * * * 4345 * * * * * * * * * 169 * * * 4021 14 3 * 8932 * * * * 3220 0 0 Y 15 * * * * 1885 * * * * * * * * * * * * * * 456 15 0 * * * * * 0 3237 0 1000 L 16 3912 * * * * * * * * 182 * * * * * * 4257 * * * 16 0 * * * * * 0 3237 0 1000 P 17 * * * * * * * * * 4054 * 4257 172 * * * * * * * 17 0 * * * * * 0 3237 0 1000 P 18 3762 * 2532 * * * * * * 4079 * * 947 5686 5650 * 5350 3163 * * 18 0 * * * * * 0 3318 0 1000 L 19 * * * * 4294 * * * * 523 3051 * 4044 * 4461 * * 5246 * * 19 0 * * * * * 0 3318 0 1000 T 20 * * * * * 4501 * * 5350 * * 3390 4461 * * 1731 1031 * * * 20 90 4044 * 1585 585 * 0 3318 1000 1000 D 21 4120 * 900 2828 * 5296 * * * * * 4095 4558 3985 4957 * 4505 * * * 21 0 * * * * * 0 3392 0 1000 V 22 1998 * 2407 1700 * * * * 4203 * * * * 2834 * 5616 * 4704 * * 22 0 * * * * * 0 3459 0 1000 Q 23 3653 * 2519 2040 * * * * 4828 * * * * 1515 * 3662 4688 * * * 23 0 * * * * * 0 4132 0 1000 I 24 * * * * * * * 1085 * 2770 3756 * * * * * * 1698 * * 24 0 * * * * * 0 4313 0 1000 E 25 1846 * * 3479 * * * * 5177 2777 4773 * * 5287 4443 3697 4597 2278 * 5275 25 0 * * * * * 0 4313 0 1000 K 26 3437 * 4002 2984 * 3144 * * 1239 * * * * 3636 4312 5306 5259 * * * 26 0 * * * * * 0 4313 0 1000 Q 27 * * * 2803 * * * * * * * * * 223 * * * * * * 27 0 * * * * * 0 4663 0 1000 V 28 * * * * * * * 1833 * 2786 * * * * * * * 800 * * 28 0 * * * * * 0 4302 0 1000 Q 29 3118 * 2487 2250 * * 5759 4372 5660 5208 * 4208 * 3324 2353 * 4931 * * * 29 0 * * * * * 0 4663 0 1000 Y 30 3531 * * 5759 4886 3870 4228 * * * 6056 5017 * 3218 * 3884 * * * 948 30 0 * * * * * 0 4663 0 1000 I 31 3266 3789 * * * * * 2342 * 968 3116 * * * * * * * * * 31 0 * * * * * 0 4354 0 1000 L 32 4554 * * * 5374 * * 1963 * 900 4021 * * * * * * 3655 * * 32 0 * * * * * 0 4354 0 1000 S 33 2343 * 3620 * * * 4227 * 4215 * * 2603 * 4521 2669 2127 5640 * * * 33 0 * * * * * 0 4660 0 1000 Q 34 * * * * * 4918 * * 2599 * * 2200 * 1041 4287 4409 * * * * 34 0 * * * * * 0 4361 0 1000 G 35 * * * * * 239 * * 3749 * * 4009 * * * 5945 * * * * 35 0 * * * * * 0 4361 0 1000 Y 36 * 3113 * * 4937 6797 4992 * * 4058 * * * 4854 * * * * 1128 1947 36 0 * * * * * 0 4361 0 1000 I 37 3018 * * 4978 * * * 1945 4331 4894 * 3810 * 4641 2634 3561 3678 3911 * * 37 0 * * * * * 0 4352 0 1000 P 38 5343 * * * 4562 * * 1591 * 5337 5413 * 1167 * * * * 3216 * * 38 0 * * * * * 0 4361 0 1000 A 39 3213 1783 * * * 1626 * * * 4126 * 4374 * * * 2946 4562 * * * 39 0 * * * * * 0 4361 0 1000 V 40 3957 * * * * * * 2016 * 1395 * * * * * * 3481 2194 * * 40 0 * * * * * 0 4361 0 1000 E 41 * * * 18 * * * * 6340 * * * * * * * * * * * 41 0 * * * * * 0 4361 0 1000 F 42 * * * * 1313 * 1613 * * * * * * * * * * 4554 3707 2723 42 48 4926 * 3515 132 * 0 4351 1221 1000 N 43 1087 * 3300 3530 * * * * * * * 4436 * * * 3710 2529 4462 * * 43 41 5156 * 4943 48 0 * 4481 1345 1000 E 44 5034 * 1416 2099 * 4252 4206 * 4243 * * 4072 * * * 2993 5897 * * * 44 126 3577 * 3486 135 * * 4467 1871 0 V 45 3882 * 2793 3571 * * * * 3460 * * 6050 1558 * 4281 3680 4661 3486 * * 45 20 6169 * 4248 78 * * 4467 1000 0 S 46 * 5627 4070 3393 * 2540 * * * * * 5909 2679 * 1493 3758 * 4293 * * 46 29 5647 * 2000 415 * * 4455 1000 0 E 47 * * * 3928 5808 * 2165 * * * 5909 4111 * 3331 1592 5959 * * * 2540 47 26 * 5808 * * * * 4455 0 0 P 48 2584 * * 5905 2029 * 5625 * * 5215 * * 2404 * * 4558 * * * 1771 48 122 3622 * 4203 81 * 0 4441 1559 1000 T 49 4283 * 2005 5907 5158 * * * 2988 * 4197 6695 * 4714 1568 4108 5003 * * * 49 0 * * * * * 0 4441 0 1000 E 50 4496 * 5215 4534 * 2746 * * * * * 1883 * 5965 5625 3925 1835 4984 * 4283 50 0 * * * * * 0 4441 0 1000 L 51 5387 * * * * 5103 3960 5905 * 6042 5625 3372 * 4648 1950 2053 2944 * * 3958 51 54 4758 * 3266 158 * 0 4441 1319 1000 Y 52 4283 * * * 4968 * * 5103 * * * * * * * 1949 4809 4767 * 846 52 0 * * * * * 0 4441 0 1000 W 53 * * * * * * * * * * * * * * * * * * 0 * 53 59 * 4648 * * * 0 4441 0 1000 T 54 5847 * 5306 2668 * * * 5257 3869 * * * 5101 2027 * 5126 1697 4492 * 4342 54 169 * 3174 * * * 0 4354 0 1620 L 55 * 4486 * 4652 * * * 6055 * 2506 1225 * 4116 * * 3357 3894 4494 * 5067 55 62 * 4566 * * 2361 312 4256 0 2374 W 56 * 2734 * 5088 3760 * * * * 3779 * * * * * * * * 713 3976 56 0 * * * * 1046 956 4329 0 2302 K 57 5161 * * 4251 * 2189 * * 1029 * * 5515 * * 4773 2720 * * * * 57 0 * * * * 1487 637 4441 0 1984 L 58 4697 * * * * 3468 * * * 803 5136 4422 2684 * * * 4823 4962 * * 58 188 * 3034 * * 822 1204 4479 0 1597 P 59 3932 * * * * 4425 * 4678 * * * * 282 * * 5252 * * * * 59 55 * 4746 * * 2173 362 4275 0 2239 L 60 3409 5180 * * 2970 * * 5622 * 2747 1234 * * 4601 * 4091 4150 * * * 60 0 * * * * 691 1394 4224 0 2129 F 61 5508 4271 * * 810 4811 * 2643 * 3443 * * * * * * * 4617 * 5182 61 0 * * * * 0 * 4376 0 1528 G 62 5842 * 2631 4134 * 1211 5042 * 5387 * * 4325 5618 5531 4828 3986 5596 * 5886 4317 62 0 * * * * * * 4465 0 0 A 63 2936 1783 * 2594 * 3398 * 3425 * 3659 * * * * * 3008 5531 * * * 63 0 * * * * * * 4465 0 0 K 64 5918 * * * * 3898 3665 6011 2896 * * 5670 4872 2983 2716 3700 1845 * * * 64 0 * * * * * * 4465 0 0 T 65 * * 952 3689 * * * * * * * 3040 * 4627 3918 2940 4410 * * * 65 0 * * * * * * 4465 0 0 S 66 2023 * * 3152 * 4998 5365 5252 * 4502 4431 6239 2130 * * 2643 5636 5838 5070 * 66 0 * * * * * * 4495 0 0 R 67 1633 * 3689 4718 * 5030 * 5897 * * 6227 3457 5840 4328 4707 2116 3757 * * * 67 23 6001 * 1000 1000 * * 4487 1000 0 E 68 2529 * * 2117 * 4166 * * * 5548 * * 6140 1477 5079 5347 4923 5379 * 4850 68 0 * * * * * * 4581 0 0 V 69 4155 * * * * * * 2446 * 5085 * * * * * * * 452 * * 69 21 6140 * 4524 64 * * 4581 1000 0 L 70 * 5475 * * 4027 * 4702 2850 * 851 3245 * * * * * * 4201 * 5323 70 0 * * * * * * 4583 0 0 A 71 2085 * * 5854 4457 3630 * * 3231 4154 5818 5381 5941 4352 3366 2943 3404 * * 5073 71 24 * 5908 * * * * 4583 0 0 E 72 2306 * * 646 * * 5853 * 5947 * * 4419 * 5923 5135 6135 5700 * * * 72 0 * * * * * 0 4573 0 1000 V 73 5105 * * * * * * 1464 * 1226 * * * * * * * 2467 * * 73 0 * * * * * 0 4489 0 1000 Q 74 3650 * * 1120 * 3985 4792 * * * * 2842 * 2790 4982 5401 6872 6257 * * 74 0 * * * * 0 * 4489 0 1000 S 75 1864 * * 1993 * 3871 4503 * 4062 * * 3437 * 4153 4753 3508 5144 * * * 75 0 * * * * * * 4494 0 0 C 76 2848 655 * * 4373 * * 4302 * 5328 * * * 5792 * * * 4914 5781 4937 76 0 * * * * * * 4494 0 0 R 77 5032 * * 6145 * * 3931 4224 2870 1449 * * * * 1936 * 4382 5394 * * 77 0 * * * * * * 4494 0 0 S 78 2584 * 5289 5964 * 5328 * * 1548 * * * * 2805 3319 2632 * 5636 * * 78 0 * * * * * * 4494 0 0 Q 79 1881 5271 4912 1607 * * 5988 * * * * 6021 * 3242 5585 4414 3474 4424 * * 79 0 * * * * * * 4517 0 0 Y 80 * 5377 * * 1991 * 1648 * 5625 * * 3177 * * * * * * * 1865 80 0 * * * * * * 4474 0 0 P 81 3561 4771 6543 5245 4943 * * * 5442 * * 4563 835 5555 5081 3208 5379 * * * 81 0 * * * * * * 4474 0 0 G 82 4498 * 1794 5125 * 1731 * * 4208 * * 2381 * 5337 * 5813 4358 * * * 82 0 * * * * * * 4472 0 0 H 83 2479 3620 3486 1812 * 4246 2671 * 4955 * * 5168 * * * 4417 * * * 4360 83 0 * * * * * * 4472 0 0 Y 84 * * * * 3334 * 3110 * * * * * * * * * * * 4721 421 84 0 * * * * * * 4387 0 0 I 85 * * * * * * 5341 1492 * * * * * * * * * 690 * * 85 0 * * * * * * 4387 0 0 R 86 * 4858 * * * * 5852 * 4392 * * * * 4240 238 * * * * * 86 0 * * * * * * 4387 0 0 V 87 * 4727 * * * * * 2658 * 1160 2873 * * * * * * 2186 * * 87 0 * * * * * * 4387 0 0 V 88 4538 * * * 3651 * * 1734 * 2374 6423 3769 * * * 4692 4360 2241 * * 88 0 * * * * * * 4387 0 0 G 89 1932 5403 * * * 595 * * * * * * * * * 6209 * 4692 * * 89 0 * * * * * * 4387 0 0 F 90 * * * 4692 1135 * * 1764 * * * * * * * * 5858 3092 * 3696 90 0 * * * * * * 4387 0 0 D 91 5412 * 137 * * * * * * * * 3892 * * * * * * * * 91 0 * * * * * * 4387 0 0 N 92 3253 * * 6162 * * * 5458 * * * 1655 1886 6333 6254 3070 3543 4648 * * 92 0 * * * * * * 4144 0 0 I 93 3760 * * * 5580 4984 5906 3460 2492 * 6376 3532 * 3783 5839 3018 3846 2719 * 4185 93 35 5366 * 1000 1000 * * 4144 1000 0 K 94 2345 * * * * 4549 4698 * 2637 * * 4329 * * 2267 3253 3257 5121 * 3934 94 72 4353 * 1000 1000 * * 4144 1193 0 Q 95 * * * 3772 * 5206 3156 * 1539 * * 5703 * 1537 4106 * 5529 * * * 95 0 * * * * * * 4144 0 0 C 96 * 4335 * * 5906 5889 * * 4721 * 5544 * * 4156 2316 1929 3810 1907 * * 96 0 * * * * * * 4144 0 0 Q 97 * 3772 * 4359 * * * * 5365 * * * * 1349 1116 * * * * * 97 134 4359 4648 1000 1000 * * 4144 1159 0 I 98 4728 2438 * * * 3268 * 2771 * 5979 * * * * 5822 5490 3370 1415 * * 98 0 * * * * 0 * 4050 0 1000 L 99 2307 5506 * * 4999 5542 5362 3906 * 2510 2470 * * * * 2926 * 2791 * * 99 0 * * * * * * 4137 0 0 S 100 2644 5825 * 1544 * 3571 * * * * 5542 * 5814 * 4869 1725 5688 * * * 100 0 * * * * * * 4137 0 0 F 101 3960 * * 6151 1076 * * 3298 6640 3354 5562 5995 * 4752 * 6267 3481 4882 * 5189 101 0 * * * * * * 4137 0 0 I 102 * * * * * * * 1045 * 2101 4103 * * * * * 3593 2822 * * 102 0 * * * * * * 4137 0 0 V 103 2473 * * * * * * 1491 * * * * * * * * * 1108 * * 103 0 * * * * * * 4137 0 0 H 104 4768 * * * 4519 * 1741 * * * * 3727 * 1220 * 4145 * * * 4076 104 0 * * * * * * 4138 0 0 K 105 * * 5697 * * * * * 2099 * * * * 4563 555 * 5375 * * * 105 0 * * * * * * 4127 0 0 P 106 * * * * * * * * * * * * 0 * * * * * * * 106 0 * * 0 * * * 4079 0 0 //