HHsearch 1.5 NAME c6jieA_ FAM FILE c6jieA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6jieA_.a3m DATE Sat Dec 14 08:30:44 2019 LENG 77 match states, 77 columns in multiple alignment FILT 31 out of 35 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4378 0.6876 SEQ >ss_dssp CCCCHHHHHHHTTCEEEEEETTSCEEEEEEEEEEECTTCCEEEEEECSSCEEEEEGGGEEEEEESSCCSSCSEEECC >sa_dssp EEEDCBECABEDEBCACACBDEEDDCECDABDDDEBEEECDAABAECEEEDCDBCCEDADBADCDDECEDBEDCECE >ss_pred CCCCEEEEEEECCCEEEEEECCCCEEEEEEECCEECCCCEEEEEEEECCCEEEEEEEEEEEEEEECCCCCEEEEEEC >ss_conf 96532999850587799999059989999811013265089999980795689980002355762478844478869 >Consensus xqyDyiEiaClxxyxvxlxLkxGxxixGxAxdtxxxxxKxExLxixxxxxxxxixLdxIxsmxalxxNphFxxvxFx >c6jieA_ SQYDYIELACLFHLPVKLTMKSGEVYYGVAADTQRNSQKQECIALRGEEETWLLETDQLSSMEALSEQPHFSVIHFK >UniRef50_B3PH51(5-80:81) Modulator of Rho-dependent transcription termination (ROF) superfamily n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PH51_CELJU E=4e-12 s/c=0.96 id=41% cov=99% -QHDYIEIVCLYHYPIRLTLTSGATIEGIAQDTQHNDQREECIKLSTDTGEQLVVLSELKQLDVLVENPHVERVVF- >UniRef50_A4BCS7(12-69:93) Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCS7_9GAMM E=5e-05 s/c=0.84 id=27% cov=77% ---DHFEHVCVLQLPVRVRLTNGTRLAGTA-DTLRVVQGLESLQLQSQRGIELVPLNEIATL--------------- >UniRef50_A3Y5G8(8-83:83) Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5G8_9GAMM E=2e-21 s/c=1.36 id=41% cov=99% -QHDYIELACVYLYEINLTLRNGDQVKGQALDTLYNDDKEACLCIKQGEEVKLVVLDQIVGMRACQENPHFHHILF- >UniRef50_Q081B6(9-85:88) Transcriptional antiterminator, Rof n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q081B6_SHEFN E=2e-13 s/c=1.00 id=34% cov=96% --YDYIEIICLYRYRVKLTLTDGTHIQGQFDRILYvnrNQQKHEAIAgINQQQQAIEVILTYITSIDVLSQNASFSHIS-- >UniRef50_C1M505(16-90:95) Transcriptional antiterminator n=1 Tax=Citrobacter sp. 30_2 RepID=C1M505_9ENTR E=4e-20 s/c=1.32 id=26% cov=99% --HDYLEIACMYHYWLRIELTDGTCFDAKALTTCTTVEKEEFLVVGQSENQQKIRLDYLSAITALTPGATFSTVSFQ >UniRef50_Q47UI2(10-71:84) Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47UI2_COLP3 E=4e-10 s/c=1.06 id=30% cov=82% --HDYFEIVCMRRSLIKVTSKDNKIYHGIATDIKL-VEKQEYLQISDDIKTEQLLLSEVKTLEAL------------ >UniRef50_D0KJR0(15-72:86) Transcriptional antiterminator, Rof n=14 Tax=Enterobacteriaceae RepID=D0KJR0_PECWW E=2e-05 s/c=0.87 id=31% cov=77% --YDSLEATCQQSLTLTLELRNGEVVTGKASDMISRKQ-IEYLVIEASGATRELRLDHIVS---------------- >UniRef50_C6MBY6(10-84:84) Transcriptional antiterminator, Rof n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MBY6_9PROT E=1e-18 s/c=1.25 id=30% cov=99% -QHDFVEVACMYRYRLRLVLKNRLIIEGIAIDIVNSPEKQECLVIDNDSRVQ-IELTQLVSMEVLTPNAKFREVIFE >UniRef50_Q12MD8(28-106:106) Transcriptional antiterminator, Rof n=1 Tax=Shewanella denitrificans OS217 RepID=Q12MD8_SHEDO E=1e-12 s/c=0.94 id=28% cov=97% --YDYIEIMCLHRYRVTVMMKDLTQYEGQFHTTSiieFEGIKREAIVgFDINQAPIQLMFEDILSISVHDDKAQFSRLQF- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 3195 * * * * * * * * * * 1091 * * * 1247 * * * * 1 0 * * * * * * 2815 0 0 Q 2 * * * * * * 2619 * * * * * * 256 * * * * * * 2 0 * * * * * * 3296 0 0 Y 3 * * * * * * 1268 * * * * * * * * * * * * 774 3 0 * * * * * * 4361 0 0 D 4 * * 0 * * * * * * * * * * * * * * * * * 4 0 * * * * * * 4447 0 0 Y 5 4782 * * * 3223 * 3557 * * * * 3779 * * * 4551 * * * 608 5 0 * * * * * * 4447 0 0 I 6 * * * * 3520 * * 760 * 1806 * * * * * * * 4791 * * 6 0 * * * * * * 4447 0 0 E 7 * * * 0 * * * * * * * * * * * * * * * * 7 0 * * * * * * 4447 0 0 L 8 4551 * * * * * 4619 1050 * 1758 * * * * * * * 2857 * * 8 0 * * * * * * 4447 0 0 A 9 513 * * * * * * 4752 * * 4300 * * * * * 4551 2568 * * 9 0 * * * * * * 4447 0 0 C 10 * 0 * * * * * * * * * * * * * * * * * * 10 0 * * * * * * 4447 0 0 L 11 * * * * * * * 3865 * 1333 1638 * * 3204 * * * 3256 * * 11 0 * * * * * * 4502 0 0 F 12 * * * * 2839 * 2920 * * 3876 * 4688 * 4607 2834 * * * * 1185 12 0 * * * * * * 4502 0 0 H 13 * * * * * 2620 2392 * 3298 5047 * 4205 * 2560 2000 4607 * * * * 13 0 * * * * * * 4502 0 0 L 14 * * * * 4851 * * 3015 * 1976 5128 * * * * 4515 * * 4688 1070 14 0 * * * * * * 4502 0 0 P 15 * * 5140 3490 * 4852 * * * 3599 5122 * 1643 2919 2727 4047 4607 * 4973 * 15 0 * * * * * * 4502 0 0 V 16 * * * * * * * 1897 * 1714 * * * * * * * 1229 * * 16 0 * * * * * * 4502 0 0 K 17 4007 3881 5201 4016 * * * * 2206 3323 * 5047 * * 2382 4087 2675 5221 * * 17 0 * * * * * * 4502 0 0 L 18 * * * * * * * 2346 * 721 * * * * * * * 2347 * * 18 0 * * * * * * 4502 0 0 T 19 * * * 2112 * * * 3990 5182 * 3714 * * * 3871 4892 1439 2931 * * 19 0 * * * * * * 4502 0 0 M 20 * * * * * * * * * 397 3355 * * * * 4515 3825 * * 5140 20 0 * * * * * * 4502 0 0 K 21 * 4892 * 4040 * * 5144 4224 1034 4851 * * * * 2963 4539 2950 * * * 21 0 * * * * * * 4502 0 0 S 22 * * 1433 * * * 4910 * * * * 1441 * * * 2433 4539 * * * 22 0 * * * * * * 4502 0 0 G 23 * * * * * 385 * * * 4381 * 3691 * 4808 4865 4688 * * * * 23 0 * * * * * * 4502 0 0 E 24 5457 * 2791 1609 * * * * 4515 4865 * 5036 * 3500 * 3338 2466 5148 * * 24 63 * 4539 * * * * 4502 0 0 V 25 * 4863 * 3021 4838 * 4803 3181 4057 * * * * 2440 3304 5153 2678 2928 * * 25 0 * * * * 0 * 4414 0 1000 Y 26 4808 5248 * * 4973 * 4854 1916 4892 2894 4539 * * * * * * 1839 * 3110 26 0 * * * * * * 4502 0 0 Y 27 4652 5199 4973 2054 * * 4515 * 2729 * 5201 * * 2425 4539 3106 4607 5148 * 5374 27 0 * * * * * * 4502 0 0 G 28 2560 * * * * 268 * * * * * * * * * * * * * * 28 0 * * * * * * 4502 0 0 V 29 * * * * * * * 1953 2024 * * 4854 * 2841 4688 * 2568 3130 * * 29 0 * * * * * * 4502 0 0 A 30 227 * * * 3590 5148 * * * * * * 4852 * * * * * * * 30 59 * 4652 * * * * 4502 0 0 A 31 4236 * 3945 4663 4825 * 4357 2888 3257 1992 5085 * * 4182 * 3803 4392 3975 * * 31 0 * * * * 0 * 4378 0 1000 D 32 * * 835 * * 3767 * * * * * 4852 * * 4834 * 1755 * * * 32 0 * * * * * * 4502 0 0 T 33 * * * * * * * 2219 * 3801 4607 * * * * * 573 * * * 33 45 5036 * 1585 585 * * 4502 1000 0 Q 34 4040 3543 * * * 3267 * 4607 2947 2477 * * * 3226 5201 2917 4539 3476 * * 34 71 4381 * 1585 585 * * 4502 1000 0 R 35 * * * * 3598 * 5457 5144 * 4515 * 4865 * * 2122 3204 2608 4892 * 1987 35 118 4834 4515 1585 585 * * 4502 1000 0 N 36 * * 2602 4331 * * * * * * * 1236 * 4497 2508 3960 4922 4512 * * 36 0 * * * * 0 * 4425 0 1000 S 37 2648 * 2852 4852 * 3713 * * 2866 * 4854 * 4865 3293 * 3233 4028 3116 * * 37 0 * * * * * * 4502 0 0 Q 38 * * 2689 2472 * * 3466 4381 5182 5199 * 3028 * 1651 * * * 5036 * * 38 221 4892 3204 1585 585 * * 4502 1000 0 K 39 4888 * * * * 4559 * * 535 * * * * * 2355 * 4720 * * * 39 0 * * * * 0 * 4326 0 1516 Q 40 4892 * 5148 2580 * * 4834 4607 * 4652 * * * 1663 2540 4539 4138 3888 * * 40 0 * * * * * * 4502 0 0 E 41 5047 * * 135 * * 4086 * * * * * * * * * * * * * 41 0 * * * * * * 4502 0 0 C 42 3590 1085 * * 3023 * * * * 4892 * * * * * 3893 * * 5248 2356 42 0 * * * * * * 4502 0 0 I 43 * * * * * * * 1371 * 770 * * * * * * * 5221 * * 43 37 5287 * 4392 70 * * 4502 1000 0 A 44 3533 5047 * 3989 4854 * * 4892 4313 3384 * * * 2575 * 4688 4539 1488 * * 44 125 3590 * 0 * * * 4502 1487 0 L 45 * * * * 4381 * * 1229 * 1606 4091 * * * * * * 2855 * * 45 0 * * * * * * 4502 0 0 R 46 5183 * 3097 2365 * 4973 5128 * 3525 * 5148 3388 * 2529 3897 3028 5182 * * * 46 0 * * * * * * 4502 0 0 G 47 3842 * 3850 * * 5374 * 3227 * * 4854 3693 * 2227 * 3871 2222 3408 * 5182 47 0 * * * * * * 4502 0 0 E 48 2659 * 2137 2961 * 3425 * * * 5221 * 3712 * 2681 * 2902 * * * * 48 0 * * * * * * 4502 0 0 E 49 2949 * 5182 2452 * 2100 * 3654 5036 * * 4180 * 3193 4652 4865 3670 * * * 49 0 * * * * * * 4502 0 0 E 50 2690 4851 4852 2331 * 1780 * * 4515 * * 4104 * 4834 4865 5182 4087 5148 * * 50 40 5182 * 4248 78 * * 4502 1000 0 T 51 3373 4688 4910 2675 * * 4054 4652 5248 5199 * 4892 4381 4082 * 4808 1988 3428 * * 51 0 * * * * * * 4502 0 0 W 52 * 5128 * 3093 * * * 3590 4121 3991 * * * 1678 2567 3584 4009 * 5374 * 52 50 * 4865 * * * * 4502 0 0 L 53 3632 * 4631 2530 * * * * 4931 2108 * 4037 * 2626 5094 4150 * * 3251 5178 53 0 * * * * 0 * 4477 0 1000 L 54 * * * * 4854 * * 1324 * 1846 * * * * * * * 1797 * * 54 0 * * * * * * 4502 0 0 E 55 4081 * * 2671 * * * 3998 * 3825 4381 * 2559 * 2077 * * 2351 * * 55 0 * * * * * * 4502 0 0 T 56 * * * * 4381 * * 4910 * 390 * * * * * * 2685 * * * 56 0 * * * * * * 4502 0 0 D 57 4851 * 918 3183 * * * 4808 * * * 2988 * * * 3911 3849 5144 * * 57 0 * * * * * * 4502 0 0 Q 58 5183 * 3306 2553 4808 * 2494 * 5122 5128 4852 * * 2733 * 3501 3473 * * 3902 58 0 * * * * * * 4502 0 0 L 59 * * * * * * * 685 * 1581 * * * * * * * 4515 * * 59 0 * * * * * * 4502 0 0 S 60 2471 4910 4808 * * * * * 2961 2500 * * * 4539 4851 3588 3970 2179 * * 60 0 * * * * * * 4502 0 0 S 61 2349 * * * * 5047 * * 4808 5128 * 5144 * 3136 4851 1478 2773 5199 * * 61 0 * * * * * * 4502 0 0 M 62 * * * * * * * 1663 * 1824 1316 * * * * * * * * * 62 0 * * * * * * 4326 0 0 E 63 * * 3223 2145 * * 3857 * 3928 * * * * 2170 3726 4050 2522 * * * 63 0 * * * * * * 4211 0 0 A 64 972 * * * * * * * * * * * 3298 * * * * 1363 * * 64 0 * * * * * * 4211 0 0 L 65 * 3323 * * * * 4050 4830 * 772 4748 * * 3667 4824 4855 4909 * * * 65 0 * * * * * * 4211 0 0 S 66 * * 3991 3618 * * 4726 3167 4656 * * * * 4709 * 3138 1404 2866 * * 66 0 * * * * * * 4191 0 0 E 67 3156 * 2076 2187 * * * * 4689 * * * 2630 3269 * 3600 4491 * * * 67 0 * * * * * * 4191 0 0 Q 68 * * 4471 * * 3273 * * 3991 * * 403 * 4963 * * * * * * 68 0 * * * * * * 4191 0 0 P 69 1369 * * * * * * * * * * * 706 * * * * * * * 69 0 * * * * * * 4191 0 0 H 70 4035 * * 4491 * * 796 * 4544 * * * * 3991 4471 4547 4558 * * 3600 70 0 * * * * * * 4191 0 0 F 71 * * * * 169 * * * * 3690 * * * * * * * 4928 * * 71 0 * * * * * * 4191 0 0 S 72 * * 2899 3259 * 4491 4709 * 3248 * * * * 4925 4544 1271 3587 * * * 72 0 * * * * * * 4191 0 0 V 73 * * 3673 2292 * * 3626 * 3753 4844 * 4759 * * 2092 3306 3696 3688 * * 73 0 * * * * * * 4191 0 0 I 74 * * * * * * * 1507 4767 3166 * * * * * * * 1000 * * 74 0 * * * * * * 4187 0 0 H 75 * * * 3128 * * 3594 3281 4675 4589 * 3687 * 3919 4607 2855 2928 3024 * 4573 75 0 * * * * * * 4060 0 0 F 76 * * * * 0 * * * * * * * * * * * * * * * 76 0 * * * * * * 3865 0 0 K 77 * * * 1422 * * * * 2090 * * * * 1351 * * * * * * 77 0 * * 0 * * * 2904 0 0 //