HHsearch 1.5 NAME c6humL_ FAM FILE c6humL_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6humL_.a3m DATE Sat Jan 12 08:10:41 2019 LENG 76 match states, 76 columns in multiple alignment FILT 12 out of 16 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.4899 1.3408 SEQ >ss_dssp CCCCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSHHHHHHHHHHHHTHHHHTTSSTTCCCCCCCCCCCC >sa_dssp EEEDEEDEDEDDEDEEDDDCCEDCADEBCEDCEEDDEECDEEBCEDADECCEEBDDABEECDEECEEEEEEEEEEE >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC >ss_conf 9614667999999999999999999999999999999999999999999999998289999865312426110079 >Consensus xxxxxxLxvlxxyxxixxxYllVvPxxixxwlxxRWyxxxxfErxxxyxlvflFFPGxxLxaPFlNFRxxprxxnx >c6humL_ MAVSTELLVLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFRPQPRSLNS >UniRef50_Q3AYG7(12-76:83) NAD(P)H-quinone oxidoreductase subunit L n=7 Tax=Cyanobacteria RepID=NDHL_SYNS9 E=2e-10 s/c=1.03 id=54% cov=83% ------LFVLLAYGAVLGTYLIAVPLALYAWINLRWYRMSKFERLGVYGLVFLFFPGMIVFAPFINLR-------- >UniRef50_P0C8E5(7-71:84) NAD(P)H-quinone oxidoreductase subunit L n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=NDHL_PROM4 E=8e-07 s/c=0.84 id=44% cov=87% ---SNSLLVLGAYGIIGFLYLVVIPLFLYFWMNIRWNFMNKFERLCLYGLVFLFFPWFDFICSF--FKPK------ >UniRef50_A2C127(19-82:89) NAD(P)H-quinone oxidoreductase subunit L n=19 Tax=cellular organisms RepID=NDHL_PROM1 E=4e-10 s/c=1.03 id=48% cov=83% ------IITLSAYAVLGGMYLFVVPLFLFYWMNNRWNVMGKFERLFIYGLVFLFFPGMVLFAPFLNLR-------- >UniRef50_B6SJY7(95-159:192) Putative uncharacterized protein n=1 Tax=Zea mays RepID=B6SJY7_MAIZE E=2e-19 s/c=1.48 id=42% cov=87% --------VVLDISIISVWYFLVMPPIIMNWLRVRWYRRKFFEMYLQFMCVFMFFPGLLLWAPFLNFRKFPRD--- >UniRef50_C6T2V2(95-161:195) Putative uncharacterized protein n=2 Tax=Glycine max RepID=C6T2V2_SOYBN E=1e-18 s/c=1.41 id=43% cov=89% ------LWVLTQWGVVLFGYFLVVPPIIMYWLWKRWYRRNLLEMYLQFMCVFIFFPGVILWAPFLNFRKFPRD--- >UniRef50_C5XC83(105-171:201) Putative uncharacterized protein Sb02g024470 n=1 Tax=Sorghum bicolor RepID=C5XC83_SORBI E=1e-17 s/c=1.35 id=40% cov=89% ------LGILPPIAAFAVFYLFVAPPIIMNWMRLRWYKREFVETYLQFMFTYLFFPGLMLWAPFVNFRKFPRD--- >UniRef50_A9SPR3(193-257:263) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPR3_PHYPA E=7e-11 s/c=1.05 id=52% cov=80% -------------GAAAVLYLFVIPLVIMNYLRLRWYNRTFLETYFQFMLVFLFFPGLLLLAPFVNFRRLPND--- >UniRef50_B1WNP9(1-85:85) NAD(P)H-quinone oxidoreductase subunit L n=18 Tax=Cyanobacteria RepID=NDHL_CYAA5 E=7e-15 s/c=1.00 id=61% cov=101% SLPQDTLIVAVLYLGLSLLYLLIIPGFVYFYLNSRWYVASSFERAFMYFLMFFFFPGVLLLSPFLNFRPKRRQVNS >UniRef50_UPI0001C33755(14-94:95) NADH dehydrogenase transmembrane subunit n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C33755 E=4e-20 s/c=1.60 id=54% cov=100% VFSWDTLLAALTYLVISVSYLLIVPGLIYIYLKSRWYVASSIERTFMYSLMFFFFPGVLLLSPFLNFRPKRRQLN- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 1487 * * * * 1674 * 1599 * * 1 0 * * * * * * 1459 0 0 A 2 1487 * * * 1599 * * * * 1674 * * * * * * * * * * 2 0 * * * * * * 1459 0 0 V 3 * * * * * * * * * * * * 1674 * * 1599 * 1487 * * 3 0 * * * * * * 1459 0 0 S 4 * * * * * * * * * * * * * 2225 * 876 * * 2051 * 4 0 * * * * * * 1760 0 0 T 5 * * 1135 * * * * * * * * 1714 * * * * 2059 * * * 5 0 * * * * * * 1760 0 0 E 6 * * * 2059 * * * * * * * * * * * 1714 1135 * * * 6 0 * * * * * * 1760 0 0 L 7 * * * * * * * 2350 * 315 * * * * * * * * * * 7 0 * * * * * * 2516 0 0 L 8 * * * * 3247 2372 * 2346 * 1669 * * * * * * * * 2394 * 8 0 * * * * * * 2516 0 0 V 9 3360 * * * * * * 2525 * * * * * * * * 3367 662 * * 9 0 * * * * * * 2533 0 0 L 10 2421 * * * * * * * * 444 * * * * * * * 3676 * * 10 0 * * * * * * 2533 0 0 G 11 * * * * * 2321 * 3635 * 1854 * * 2525 * * 3367 3595 3484 * * 11 0 * * * * * * 2533 0 0 V 12 1663 * 3676 * * * * * * 3484 * * 3526 2615 * * 2439 3606 * * 12 0 * * * * * * 2533 0 0 Y 13 * * * * * * * 2599 * 3635 * * * * * * * 3523 3595 774 13 0 * * * * * * 2533 0 0 G 14 2020 * * * * 998 * * * 2494 * * * * * 3736 * * * * 14 0 * * * * * * 2529 0 0 A 15 1349 * * * * 3566 * 1931 * * * * * * * * * 1940 * * 15 0 * * * * * * 2529 0 0 L 16 3976 * * * 3690 * * 1462 * 1993 * * * * * * * 2030 * * 16 0 * * * * * * 2529 0 0 A 17 1750 * * * * 2284 * * * 2030 * * * * * 1985 * * * * 17 0 * * * * * * 2529 0 0 G 18 * * * * 1538 1931 * * * 3566 * * * * * * * 1694 * * 18 0 * * * * * * 2529 0 0 L 19 * * * * 3690 3684 * * * 1555 3476 * * * * 3426 3390 3656 2769 * 19 0 * * * * * * 2529 0 0 Y 20 * * * * * * * * * * * * * * * * * * * 0 20 0 * * * * * * 2529 0 0 L 21 * * * * 2155 * * * * 367 * * * * * * * * * * 21 0 * * * * * * 2529 0 0 L 22 * * * * 1689 * * 3390 * 1062 * * * * * * * 3115 * * 22 0 * * * * * * 2529 0 0 V 23 3390 * * * * * * 2005 * * * * * * * * * 609 * * 23 0 * * * * * * 2529 0 0 V 24 3690 * * * 3656 * * 1924 * * 2769 * * * * * * 1207 * * 24 0 * * * * * * 2529 0 0 P 25 * * * * * * * * * * * * 0 * * * * * * * 25 0 * * * * * * 2529 0 0 A 26 3699 * * * * 2494 * * * 1457 * * 1391 * * * * * * * 26 0 * * * * * * 2529 0 0 I 27 3390 * * * 1787 * * 1126 * 3426 * * * * * * * 3976 * * 27 0 * * * * * * 2529 0 0 V 28 * * * * * * * 895 * 1734 * * * * * * * 2631 * * 28 0 * * * * * * 2529 0 0 Y 29 * * * * 3476 * * * * * 1169 * * * * * * * * 1104 29 0 * * * * * * 2529 0 0 A 30 2536 * * * 2323 * * 3426 * * * 1446 * * * * * * * 2577 30 0 * * * * * * 2529 0 0 Y 31 * * * * * * * * * * * * * * * * * * 552 1653 31 0 * * * * * * 2529 0 0 L 32 * * * * * * * 3390 * 882 1466 * * * * * * * * * 32 0 * * * * * * 2529 0 0 N 33 * * * * * * * * 3426 * * 1114 * * 1446 * * * 3684 * 33 0 * * * * * * 2529 0 0 A 34 3699 * * * * * * 2418 3684 1663 * 3476 * * * 2494 * 3736 * * 34 0 * * * * * * 2529 0 0 R 35 * * * * * * * * * * * * * * 0 * * * * * 35 0 * * * * * * 2529 0 0 W 36 * * * * * * * * * * * * * * * * * * 0 * 36 0 * * * * * * 2529 0 0 Y 37 * * * * 3656 * * * * * * 2284 * * * * * * * 483 37 0 * * * * * * 2529 0 0 V 38 * * * 3802 3115 * * * 2673 * * 3976 * * 2010 * * 1538 * * 38 0 * * * * * * 2529 0 0 A 39 1974 * * * * * * * * * 1734 * * * 1169 * * * * * 39 0 * * * * * * 2529 0 0 S 40 * * * 3690 * 3476 * * 2695 * * 1916 * * * 1515 3976 * * * 40 0 * * * * * * 2529 0 0 S 41 * * * * 1759 * * * 1734 2742 * * * * * 1974 * * * * 41 0 * * * * * * 2529 0 0 F 42 * * * * 897 * * 3426 * 2231 * * * * * * * 2673 * * 42 0 * * * * * * 2529 0 0 E 43 * * * 0 * * * * * * * * * * * * * * * * 43 0 * * * * * * 2529 0 0 R 44 * * * * * * * * * * 2155 * * * 849 * 2182 * * * 44 0 * * * * * * 2529 0 0 A 45 2631 * * * * * * * * 1734 * * * * * * 3426 * * 1169 45 0 * * * * * * 2529 0 0 F 46 * 3115 * * 1294 3390 * * * 1391 * * * * * * * * * * 46 0 * * * * * * 2529 0 0 M 47 * * * * * * * 3476 * 3115 1974 * * 1169 * * * 3390 * * 47 0 * * * * * * 2529 0 0 Y 48 * * * * 1169 * * * * * * * * * * * * * * 849 48 0 * * * * * * 2529 0 0 F 49 * * * * 2631 1734 * * * * 1169 * * * * 3426 * * * * 49 0 * * * * * * 2529 0 0 L 50 * 2710 * * 2130 * * * * 693 * * * * * * * * * * 50 0 * * * * * * 2529 0 0 V 51 * * * * * * * * * * 2494 * * * * * 2673 587 * * 51 0 * * * * * * 2529 0 0 T 52 * * * * 384 * * * * * * * * * * * 3699 * * 2673 52 0 * * * * * * 2529 0 0 F 53 * * * * 1974 * * 3684 * 941 2769 * * * * * * * * * 53 0 * * * * * * 2529 0 0 F 54 * * * * 0 * * * * * * * * * * * * * * * 54 0 * * * * * * 2529 0 0 F 55 * * * * 0 * * * * * * * * * * * * * * * 55 0 * * * * * * 2529 0 0 P 56 * * * * * * * * * * * * 0 * * * * * * * 56 0 * * * * * * 2529 0 0 G 57 * * * * * 177 * * * * * * * * * * * * 3115 * 57 0 * * * * * * 2529 0 0 L 58 * * * * 3115 * * * * 1771 1918 * * * * * * 1613 * * 58 0 * * * * * * 2529 0 0 L 59 * * 3115 * * * * 2530 * 1347 2130 * * * * * * 3476 * * 59 0 * * * * * * 2529 0 0 L 60 * * * * 3115 * * * * 342 * * * * * * * 3390 * * 60 0 * * * * * * 2529 0 0 L 61 * * * * 2433 * * 3115 * 1653 * * * * * * * * 1391 * 61 0 * * * * * * 2529 0 0 A 62 500 3115 * * * * * * * * * * * * * 2494 * * * * 62 0 * * * * * * 2529 0 0 P 63 * * * * * * * * * * * * 177 * * 3115 * * * * 63 0 * * * * * * 2529 0 0 F 64 * * * * 0 * * * * * * * * * * * * * * * 64 177 * 3115 * * * * 2529 0 0 I 65 * * * * * * * 2319 * 846 * * * * * * * 2039 * * 65 0 * * * * * 0 2418 0 1000 N 66 * * * * * * * * * * * 0 * * * * * * * * 66 0 * * * * 0 * 2418 0 1000 F 67 * * * * 296 * * * * 2433 * * * * * * * * * * 67 0 * * * * * * 2529 0 0 R 68 * * * * * * * * 3115 * * * * * 177 * * * * * 68 0 * * * * * * 2529 0 0 P 69 * * * * * * * * 1180 * * * 1092 * 3485 * * * * * 69 0 * * * * * * 2376 0 0 Q 70 * * * * 1180 * * * 1454 3485 * * * 3263 * * * * * * 70 0 * * * * * * 2376 0 0 P 71 * * * * * * * * * * * * 424 * 1975 * * * * * 71 0 * * * * * * 2078 0 0 R 72 * * * * * * * * * * * 3140 * * 174 * * * * * 72 0 * * * * * * 2078 0 0 S 73 * * 689 * * * * * * * * * * 1975 * 2995 * * * * 73 0 * * * * * * 2078 0 0 L 74 * * * * * * * * * 542 * * * * * * * 1674 * * 74 0 * * * * * * 1459 0 0 N 75 * * * * * * * * * * * 0 * * * * * * * * 75 0 * * * * * * 1459 0 0 S 76 * * * * * * * * * * * * * * * 0 * * * * 76 0 * * 0 * * * 1303 0 0 //