HHsearch 1.5 NAME c6hbbA_ FAM FILE c6hbbA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6hbbA_.a3m DATE Sat Dec 22 08:40:25 2018 LENG 88 match states, 88 columns in multiple alignment FILT 69 out of 73 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4010 -0.2218 SEQ >ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEECHHHHHTTCCEECCCCCCCCHHHHHHHHHHHHHHTTTSEEEEEEECTTTCCEEEEEEEECCCC >sa_dssp DCDEEBCECADDBBEEECEACBBCACEEDDEEEDCDEBEEBDCEEDEDABDCADDBBDECEECCACABACCDEECDDDCDCDCCEBEE >ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEECCCC >ss_conf 9878999999999978987799644887646565444677889898999999999998689982899998199743899998866897 >Consensus xldxxixxQVxxllxqGxxixxExadxrrxrxxxWxxxpxxxxxxxxxVlxelxxcxxxxpxxYVRligxDxxxkxrxxxxivqRPxg >c6hbbA_ FLSSEVITQVRSLLNQGYRIGTEHADKRRFRTSSWQPCAPIQSTNERQVLSELENCLSEHEGEYVRLLGIDTNTRSRVFEALIQRPDG >UniRef50_P22860(29-112:113) Ribulose bisphosphate carboxylase small chain 2 n=2 Tax=Allochromatium vinosum RepID=RBS2_CHRVI E=8e-08 s/c=0.69 id=27% cov=94% ----EILEQILYILDNGWNASLEHEHPDRAFEYYWPmwKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP-- >UniRef50_P10053(76-171:171) Ribulose bisphosphate carboxylase small chain, chloroplastic n=4 Tax=Spermatophyta RepID=RBS_PINTH E=9e-07 s/c=0.57 id=19% cov=95% ----QLVKEVEYLLRNKWVPCLEFdlegSISRKYNRSpgyydgrYWVmwKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKPE - >UniRef50_Q7XYK5(87-185:252) Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2 (Fragment) n=6 Tax=Chlorarachniophyceae RepID=Q7XYK5_BIGNA E=4e-06 s/c=0.53 id=22% cov=99% FTEQDIAAQINYMIQNGLIPCVEFDKGGQiFREHSrmpgyydgryWTmwKLPMFGATDAGAVMREIAECKQNNPDSFIRVLGFDNIKQVQCMGFLASRP- - >UniRef50_B4WNX1(635-719:872) Ribulose bisphosphate carboxylase, small subunit, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNX1_9SYNE E=1e-25 s/c=1.38 id=41% cov=98% -IDATVMDQVTQLINQGHKISIEYADKRRYRSGIWKTGPAIDARRPAEAISALGKQLAQHNNDYVRLVGVDPNVKRRVVELTIQRP-- >UniRef50_O30711(230-314:661) Carbon dioxide concentrating mechanism protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=O30711_SYNP2 E=1e-21 s/c=1.21 id=37% cov=98% -LNGDLYNQVRGLAAQGCTFTAEYANKRRFKTKSWLSAGFVEGHSADQIIGNLNRVLADHAGEYVQLIAVAPNSKSRAAEIVVQRP-- >UniRef50_Q2JX50(323-407:407) Ribulose bisphosphate carboxylase/oxygenase activase n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JX50_SYNJA E=2e-24 s/c=1.33 id=41% cov=98% -LNPDVQAQLRQILAQGYEILVEHADPRRYRVHSWQECGVAHLREWAAACQAVEQCLSRFPKDYIRLVGVDPVKKQRRVEAIIHRP-- >UniRef50_C6MDT8(20-109:144) Ribulose-bisphosphate carboxylase n=60 Tax=cellular organisms RepID=C6MDT8_9PROT E=1e-23 s/c=1.22 id=20% cov=97% --DKQISAQLKYALKNGWAIGIEYTDDPHPRNTYWEMFgnPMFDLKDPAGILLEINSCRKTFPNHYIRVTAFNSTRgvESPTMSYIVNRP-- >UniRef50_B4WNX1(500-581:872) Ribulose bisphosphate carboxylase, small subunit, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNX1_9SYNE E=1e-17 s/c=1.11 id=31% cov=94% ----EVAQAVGRIIRSGNHVGVEFADKRRYRSGIWQTAPSINASSESAAVNQLQRFLDQNADKYVRIFGVNIQTKTRGAATTIHKP-- >UniRef50_C5SC11(40-118:119) Ribulose bisphosphate carboxylase small chain n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SC11_CHRVI E=4e-13 s/c=0.96 id=26% cov=89% --------QLEHCLHRGCIIAIEHAERVQAAYTAWEPWEPPSCysGDMAAVHGAIARCRQAHCDHHIRLSVEDVSYHSR-LALMVHRP-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 527 * * * * 1707 * * * * * * * * * * 1 0 * * * * * * 2013 0 0 L 2 * * * * * * * 3739 * 340 * * * * * * 2886 * * * 2 0 * * * * * * 3332 0 0 S 3 5472 * 973 4386 * * * * 4644 * * 3233 4738 * * 2559 3908 * * * 3 0 * * * * * * 4205 0 0 S 4 2462 * 3791 2752 * 4067 * * 4919 4057 * 6155 2932 2569 * 3105 6046 * * * 4 0 * * * * * * 4200 0 0 E 5 * * 1934 1637 * 5078 * * * * * 6018 * 1915 * 3447 6070 * * * 5 0 * * * * * * 4477 0 0 V 6 4997 * * * * * * 1287 * 2776 * * * * * 6177 4642 1478 * * 6 0 * * * * * * 4525 0 0 I 7 2168 * * 3802 * * * 4897 5399 4002 5077 * * 3210 5207 4068 3890 1987 * 4569 7 0 * * * * * * 4525 0 0 T 8 2984 * 3896 3014 * 5044 * * 1564 * * 4024 * 2907 5383 4242 4558 * * * 8 0 * * * * * * 4525 0 0 Q 9 5378 * * 2742 * * 5908 * 5256 * * * * 377 * * 6201 * * * 9 0 * * * * * * 4645 0 0 V 10 * * * * * * * 1925 * 2699 * * * * * * * 779 * * 10 0 * * * * * * 4645 0 0 R 11 3746 * 2663 2848 * 5378 4420 5511 5560 5489 * 4050 * 3287 1729 * 5161 * * * 11 0 * * * * * * 4645 0 0 S 12 3764 * * 6283 5406 3893 4758 * * * 6453 4655 * 2870 4702 2925 * * * 1225 12 0 * * * * * * 4645 0 0 L 13 3582 4219 * * * * * 2536 * 844 3499 * * * * * * 5286 * 5709 13 0 * * * * * * 4645 0 0 L 14 4194 * * * 6134 * * 2233 * 740 4413 * * * * * * 3782 * * 14 0 * * * * * * 4645 0 0 N 15 2054 * 4029 * * * 4333 * 4324 * 6196 2919 * 4947 2677 2055 5448 * * * 15 0 * * * * * * 4645 0 0 Q 16 * * * * * 4494 * * 2867 * * 2123 * 993 4758 4331 * * * * 16 0 * * * * * * 4645 0 0 G 17 * * * * * 154 * * 4756 * * 4306 * * * 6221 * * * * 17 0 * * * * * * 4645 0 0 Y 18 * 3107 5286 * 5308 * 4151 * * 4512 * 5378 * 5511 * * * * 1396 1703 18 0 * * * * * * 4645 0 0 R 19 3319 * * 5722 * 6156 5378 2354 3248 5202 * 4009 * 5464 2298 3643 3663 4297 * 5908 19 0 * * * * * * 4645 0 0 I 20 5489 * * * 4194 * * 1355 * 4871 5654 * 1555 * * * * 2858 * * 20 0 * * * * * * 4645 0 0 G 21 3533 2049 * * * 1286 * * * 4693 * 4667 * * * 3128 3849 * * * 21 0 * * * * * * 4645 0 0 T 22 3644 * * * 6101 * * 2198 * 1766 4959 * * * * * 2779 2312 * 6131 22 0 * * * * * * 4658 0 0 E 23 * * * 0 * * * * * * * * * * * * * * * * 23 0 * * * * * * 4658 0 0 H 24 * * * * 1571 * 1304 * * * * * * * * * * 5245 4013 2557 24 66 4486 * 2856 214 * * 4658 1689 0 A 25 930 * 3964 3654 * 5799 * * * * * * * * * 3265 2783 3958 * * 25 32 5492 * 3525 131 * * 4658 1204 0 D 26 4775 * 1085 2578 * 4660 4587 6110 4032 * * 3487 * * * 3903 6424 * * * 26 129 3546 * 3211 165 * * 4658 1813 0 K 27 3300 * 3157 3509 * 4774 * * 2348 * * 6332 2088 5300 4789 3455 4286 6159 * * 27 0 * * * * * * 4658 0 0 R 28 5461 6177 4112 3912 5487 3499 * * 6159 * * 6112 3005 * 982 4918 * 4789 * * 28 31 5541 * 4170 82 * * 4658 1247 0 R 29 * * * 5266 * * 2328 * 6110 * 6112 5680 * 3498 1063 * * 5487 * 2866 29 36 5335 * 2797 224 * * 4658 1415 0 F 30 2984 * * * 1407 * * * * 5398 * * 2856 * * 5680 * * * 1666 30 37 5291 * 4170 82 * * 4658 1068 0 R 31 4789 * 2529 6320 5500 * * * 2259 * 4532 6110 * 4882 1281 5971 6203 * * 6112 31 0 * * * * * * 4658 0 0 T 32 4171 * 5398 4091 * 3423 * * * * 5300 2403 * 6203 6110 3379 1524 4429 * 4789 32 0 * * * * * * 4658 0 0 S 33 4886 * 6159 * * 2978 3816 * 3872 * * 3105 * 4846 2635 2120 3421 * * 4309 33 21 6110 * 2807 222 * * 4658 1000 0 S 34 4789 * * * 5326 6357 * 4297 * * * * * * * 1188 5521 4467 * 1435 34 42 5122 * 3731 113 * * 4658 1403 0 W 35 * * * * * * * * * * * * * * * * 5487 * 33 * 35 0 * * * * * * 4658 0 0 Q 36 * * 4933 2893 * * * 6167 3510 3631 * * 5500 1845 * 3889 2344 4449 * 4656 36 827 1270 5521 1312 744 * * 4658 3146 0 P 37 * * * 5727 * 3421 * * 1506 * 5555 6716 3402 * * 2345 2414 5271 * * 37 0 * * * * 0 * 4629 0 1000 C 38 3472 1978 5909 6485 5584 3385 * * * 1224 5501 * * * * * * * 4795 5293 38 63 4550 * 2831 218 * * 4656 1674 0 A 39 3669 * * 4373 * 2707 * 5909 * * * * 794 * * 3794 5787 6127 * 5514 39 0 * * * * * * 4656 0 0 P 40 3506 * * * 3231 * 6127 * * 3365 1662 6181 2558 5909 5514 5429 3127 5769 * * 40 0 * * * * * * 4656 0 0 I 41 4963 * * * 1202 * * 1792 * 4378 * * 4795 * * 6127 5514 3675 6181 4969 41 0 * * * * * * 4656 0 0 Q 42 6086 * 2243 3991 * 1427 4406 5514 5787 * * 4773 * 3825 5267 3553 4893 * * * 42 0 * * * * * * 4656 0 0 S 43 2758 1874 5787 3470 * 2770 * 3483 * 4171 * * * 5514 * 3027 4835 * * * 43 53 4795 * 1000 1000 * * 4656 1000 0 T 44 4262 * 5117 * 6188 3813 3941 6356 3225 * * 4831 6150 3596 3148 2881 1892 * * * 44 20 * 6181 * * * * 4656 0 0 N 45 5091 * 1338 4264 * 6110 5312 * * * * 2723 * 4893 2848 3068 5268 * * 6137 45 0 * * * * 0 * 4655 0 1000 E 46 2309 * * 1811 * 4674 6177 5402 * 5087 4795 6869 2340 5293 * 3248 * 5974 5769 * 46 0 * * * * * * 4656 0 0 R 47 1797 * 3605 4623 * 4650 * * * * 6653 3858 4436 4124 4416 1987 4555 5293 * * 47 0 * * * * * * 4656 0 0 Q 48 2640 * 4459 1726 * 4750 * * * * * * * 1549 5402 5673 5146 4593 * * 48 0 * * * * * * 4656 0 0 V 49 2454 * * * * * * 2742 * 5492 * * * * * * * 631 * * 49 0 * * * * * * 4656 0 0 L 50 * 5769 * * 3842 * 4795 2230 5293 1159 3553 * * * * * * 3855 * 4831 50 0 * * * * * * 4656 0 0 S 51 2090 * * 4716 4703 3472 * * 3850 4750 5974 4042 5109 3975 3616 2859 3621 * * 5492 51 0 * * * * * * 4656 0 0 E 52 2328 * * 884 * * 6229 * 6256 * * 3934 * 4709 4267 6473 5186 4714 * * 52 0 * * * * * * 4616 0 0 L 53 5426 * * * * * * 1749 * 954 * * * * * * * 2617 * * 53 0 * * * * * * 4616 0 0 E 54 3544 * * 1380 * 4149 5173 * * * * 2923 * 2510 3843 4485 6140 6652 * * 54 0 * * * * * * 4616 0 0 N 55 1803 * * 1989 * 4223 4267 * 4947 * * 3717 * 4413 3484 3948 4429 * * * 55 0 * * * * * * 4616 0 0 C 56 2739 709 * * 3688 * * 4709 * 5756 * * * 5422 * 5968 6181 4736 6213 * 56 0 * * * * * * 4616 0 0 L 57 4676 * * 6120 * * 4115 4019 3737 1158 * * * * 2110 * 4166 5896 * * 57 0 * * * * * * 4616 0 0 S 58 2122 * 4331 6624 * 5756 * * 1861 * * * * 2788 3439 2664 * 5506 * * 58 0 * * * * * * 4616 0 0 E 59 1922 5355 3974 1569 * 6133 5032 * * * * 6214 * 3557 5043 4130 4524 4765 * * 59 0 * * * * * * 4616 0 0 H 60 * 5651 * * 2232 * 1426 * 5699 * * 3208 * * * * * * * 1901 60 0 * * * * * * 4616 0 0 E 61 3355 4742 6160 4762 * * * * 5646 * * 4895 922 4637 5546 2954 4566 * * * 61 0 * * * * * * 4616 0 0 G 62 4674 * 1791 5521 * 1506 * * 3926 * * 2462 * 5811 * 5949 5900 * * * 62 0 * * * * * * 4616 0 0 E 63 2484 3488 3525 1610 * 4584 2781 * 4812 * * 5426 * * * 4453 * * * 5270 63 0 * * * * * * 4616 0 0 Y 64 * * * * 3024 * 3091 * * * * * * * * * * * 5401 442 64 0 * * * * * * 4616 0 0 V 65 * * * * * * 4841 1497 * * * * * * * * * 711 * * 65 0 * * * * * * 4616 0 0 R 66 * * * * * * 6837 * 4607 * * * * 4275 154 * * * * * 66 0 * * * * * * 4616 0 0 L 67 * 5173 * * * * * 3054 * 987 3124 * * * * * * 2102 * * 67 0 * * * * * * 4616 0 0 L 68 4397 * * * 3559 * * 1563 * 2734 6199 4036 * * * 4742 4748 2122 * * 68 0 * * * * * * 4616 0 0 G 69 2129 5324 * * * 526 * * * * * * * * * 6099 * 4742 * * 69 0 * * * * * * 4616 0 0 I 70 * * * 4742 1350 * * 1485 * * * * * * * * 6133 3074 * 3645 70 0 * * * * * * 4616 0 0 D 71 5787 * 134 * * * * * * * * 3823 * * * * * * * * 71 0 * * * * * * 4616 0 0 T 72 3442 * * 6229 * * * 5402 * * * 1815 1595 6213 6256 3197 3594 4742 * * 72 0 * * * * * * 4616 0 0 N 73 3917 * * * 5426 4661 5756 3266 2141 * 7472 3676 * 3753 5270 3205 4153 3101 * 4141 73 61 4584 * 1000 1000 * * 4616 1189 0 T 74 2081 * * * * 4036 5116 * 2534 * * 5499 * * 2541 3246 2908 5003 * 4742 74 84 4147 * 1000 1000 * * 4616 1493 0 R 75 * * * 3349 * * 4032 * 1289 * * 5263 * 1513 4186 * * * * * 75 0 * * * * * * 4616 0 0 S 76 * 4365 * * 5756 6298 * * 4368 * 6059 * * 3690 2046 1834 3507 2567 * * 76 0 * * * * * * 4616 0 0 R 77 * 4036 * * * * * * 5491 * * * 5567 1506 922 * * 5955 * * 77 56 * 4720 * * * * 4616 0 0 V 78 4837 2450 * * * 3216 * 3525 * 4750 * * * * 5692 6008 3214 1295 * * 78 0 * * * * 0 * 4527 0 1000 F 79 2015 5960 * * 5529 5701 5477 4009 * 2470 2678 * * * * 3468 * 2559 * 6119 79 0 * * * * * * 4638 0 0 E 80 2783 5631 * 1295 * 3633 * * * * 5701 * 5901 * * 1812 5285 * * * 80 0 * * * * * * 4638 0 0 A 81 4005 * * 6195 1260 * * 3414 4996 3224 5386 5503 * 4824 6119 6162 3179 4913 * 5566 81 0 * * * * * * 4638 0 0 L 82 * * * * * * * 1016 * 2396 4212 * * * * * 3406 2581 * * 82 0 * * * * * * 4638 0 0 I 83 2956 * * * * * * 1257 * * * * * * * * * 1143 * * 83 0 * * * * * * 4638 0 0 Q 84 * * * * 5498 * 1601 * * * * 4101 * 1063 * 4724 * * * 3766 84 0 * * * * * * 4618 0 0 R 85 * * 6317 * * * * * 2382 * * * * 4438 518 * 4284 * * * 85 0 * * * * * * 4618 0 0 P 86 5169 * * * * * * * * * * * 41 * * * * * * * 86 0 * * * * * * 4575 0 0 D 87 * * 1849 2573 * 4710 * * * * * 1505 3434 4921 * 4700 * * * * 87 0 * * * * * * 3726 0 0 G 88 * * * * * 0 * * * * * * * * * * * * * * 88 0 * * 0 * * * 3161 0 0 //