HHsearch 1.5 NAME c6hasB_ FAM FILE c6hasB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6hasB_.a3m DATE Sat Jan 18 09:11:01 2020 LENG 87 match states, 87 columns in multiple alignment FILT 68 out of 72 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.3883 -1.0623 SEQ >ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEECHHHHTTTCCEEEEEEEECSHHHHHHHHHHHHHHTTTSEEEEEEEETTTTEEEEEEEEECCC >sa_dssp ECDEEBCDCADEBCEEDBCABABBBCDEDDEEDDCEDBEEDCBECDEDACEBADDABEEDEDCCABAAABCDEEEDDDDDCCCCECE >ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEECCC >ss_conf 986899999999997898337842486553333544445666888899999999999868998289999719873489998765588 >Consensus xlxxevxxQVxxllxqGxxigiEhadxrrxrtxsWxxxxxxxxxxxxxVlxelxxcxxxxpxxYVRligxDxxxkxrxxxxivqRPx >c6hasB_ HLSLETQEQIRQILSQGHKITFEHVDARRFRTGSWQSCGTLHIDAESDAISTLEACLVDYDGEYVRMVGIDPKGKRRVVETIIQRPN >UniRef50_P22860(29-112:113) Ribulose bisphosphate carboxylase small chain 2 n=2 Tax=Allochromatium vinosum RepID=RBS2_CHRVI E=3e-11 s/c=0.83 id=27% cov=95% ----EILEQILYILDNGWNASLEHEHPDRAFEYYWPMWKmPFFGEQDPNVIlTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP- >UniRef50_C6MDT8(22-109:144) Ribulose-bisphosphate carboxylase n=60 Tax=cellular organisms RepID=C6MDT8_9PROT E=2e-08 s/c=0.68 id=18% cov=95% ----QISAQLKYALKNGWAIGIEYTDDPHPRNTYWEMFGNpmFDLKDPAGILLEINSCRKTFPNHYIRVTAFNStrGVESPTMSYIVNRP- >UniRef50_B4WNX1(496-581:872) Ribulose bisphosphate carboxylase, small subunit, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNX1_9SYNE E=4e-18 s/c=1.08 id=30% cov=95% ----EVAQAVGRIIRSGNHVGVEFADKRRYRSGIWQTAPSINASSESAAVNQLQRFLDQNADKYVRIFGVNIQTKTRGAATTIHKP- >UniRef50_B4WNZ5(374-455:455) Ribulose bisphosphate carboxylase, small subunit, putative n=2 Tax=Cyanobacteria RepID=B4WNZ5_9SYNE E=1e-21 s/c=1.27 id=36% cov=95% -----VQQQLQSVLSSGDRIAIEHSDQRRFRMNSWQPYAAVDTANQVEAKERLQHCLSEFSNYYIRLIGINTRTKQRTAELIVHRPD >UniRef50_C5SC11(40-118:119) Ribulose bisphosphate carboxylase small chain n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SC11_CHRVI E=3e-13 s/c=0.97 id=17% cov=90% --------QLEHCLHRGCIIAIEHAERVQAAYTAWEPWepPSCYSGDMAAVHGAIARCRQAHCDHHIRLSVEDVSYHSR-LALMVHRP- >UniRef50_O30711(230-314:661) Carbon dioxide concentrating mechanism protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=O30711_SYNP2 E=2e-22 s/c=1.26 id=35% cov=99% -LNGDLYNQVRGLAAQGCTFTAEYANKRRFKTKSWLSAGFVEGHSADQIIGNLNRVLADHAGEYVQLIAVAPNSKSRAAEIVVQRP- >UniRef50_P54206(21-107:113) Ribulose bisphosphate carboxylase small chain n=50 Tax=Cyanobacteria RepID=RBS_SYNY3 E=3e-26 s/c=1.37 id=19% cov=98% ---QQIAKQVEFLLDQGFIPGVEFEEDPQPETHFWTMWklPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKPN >UniRef50_P16133(67-170:184) Ribulose bisphosphate carboxylase small chain 5, chloroplastic n=14 Tax=Chlorophyta RepID=RBS5_ACECL E=8e-21 s/c=0.97 id=23% cov=51% -------------------------------------------TDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP- >UniRef50_B4WTQ9(1-56:57) Ribulose bisphosphate carboxylase, small subunit n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WTQ9_9SYNE E=5e-12 s/c=1.29 id=33% cov=66% ---------------------MEFANAKRFKADSWQTAPAITSPYEAQVLTQVEQFLSHHPDDYVRLLSIDPKAKQR---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 816 * * * * 1211 * * * * * * * * 1 0 * * * * * * 1969 0 0 L 2 * * * * * * * * * 85 * * * * * 4132 * * * * 2 0 * * * * * * 2811 0 0 S 3 4290 * 3696 4326 * * * * 3648 4132 * 2345 * * * 1527 2823 * * * 3 0 * * * * * * 2811 0 0 L 4 5082 * * * * 3286 * * * 3350 * 5167 2135 1650 * 2555 5282 * * * 4 0 * * * * * * 3406 0 0 E 5 * * 1815 1245 * * * * * * * 5472 * 2143 * 4481 * * * * 5 0 * * * * * * 4273 0 0 T 6 4753 * * * * * * 1310 * 3903 * * * * * 5801 4409 1226 * * 6 0 * * * * * * 4349 0 0 Q 7 2846 * * 3586 * * * 4599 4998 4297 4964 * * 2977 4288 4296 3962 1825 * 4424 7 0 * * * * * * 4349 0 0 E 8 3064 * 3736 2596 * 4709 * * 2097 * * 3805 * 2737 5020 3963 4273 * * * 8 0 * * * * * * 4349 0 0 Q 9 5150 * * 3712 * * 5608 * 5063 * * * * 270 * * 5968 * * * 9 0 * * * * * * 4566 0 0 I 10 * * * * * * * 1830 * 2449 * * * * * * * 901 * * 10 0 * * * * * * 4566 0 0 R 11 3361 * * 2718 * 5150 4154 5466 5260 4467 * 4133 * 2790 1547 * 5130 * * * 11 0 * * * * * * 4566 0 0 Q 12 3474 * * 6057 5603 3730 4489 * * * * 4738 * 2677 4440 2728 * * * 1459 12 0 * * * * * * 4566 0 0 I 13 3152 3925 * * * * * 2683 * 753 5578 * * * * * * 5093 * 5474 13 0 * * * * * * 4566 0 0 L 14 3908 * * * 5956 * * 2398 * 714 5054 * * * * * * 3511 * * 14 0 * * * * * * 4566 0 0 S 15 2067 * 3207 * * * 4043 * 5260 * 5994 2707 * * 3651 1797 5054 * * * 15 0 * * * * * * 4566 0 0 Q 16 * * * * * 4567 * * 2932 * * 2848 * 771 4489 4121 * * * * 16 0 * * * * * * 4566 0 0 G 17 * * * * * 45 * * * * * 5024 * * * * * * * * 17 0 * * * * * * 4566 0 0 H 18 * 2828 5093 * 4590 * 4041 * * * * 5150 * 5466 * * * * 1639 1491 18 0 * * * * * * 4566 0 0 K 19 2902 * * 5429 * 5989 5150 3216 3080 5426 * 3128 * 5217 2104 3611 3763 * * 5608 19 0 * * * * * * 4566 0 0 I 20 4467 * * * 3908 * * 1178 * 4366 5290 * 2285 * * * * 2582 * * 20 0 * * * * * * 4566 0 0 T 21 3078 4276 * * * 1012 * * * 4489 * 4151 * * * 2732 3594 * * * 21 0 * * * * * * 4566 0 0 F 22 3393 * * * 5970 * * 1793 * 2547 4691 * * * * * 2638 2237 * 5816 22 0 * * * * * * 4579 0 0 E 23 * * * 0 * * * * * * * * * * * * * * * * 23 0 * * * * * * 4579 0 0 H 24 * * * * 2442 * 984 * * * * * * * * * * 5034 3546 2363 24 0 * * * * * * 4579 0 0 V 25 905 * * 2874 * * * * * * * * * * * 4316 2303 3705 * * 25 0 * * * * * * 4579 0 0 D 26 * * 815 2525 * 5435 3933 * * * * 3275 * * * 3920 * * * * 26 0 * * * * * * 4579 0 0 A 27 3204 * 2711 3302 * * * * 2260 * * 5592 2307 5109 4536 4216 3968 5968 * * 27 0 * * * * * * 4579 0 0 R 28 4295 * 4490 3869 * * * * 5857 * * * 2527 * 836 4566 * 4536 * * 28 0 * * * * * * 4579 0 0 R 29 * * * 4574 * * 1920 * 5096 * * 5575 * 3980 785 * * * * * 29 75 4295 * 4248 78 * * 4579 1163 0 F 30 3161 * * * 1247 * * * * 4498 * * 2360 * * 5575 * * * 2273 30 0 * * * * * * 4579 0 0 R 31 4536 * 4295 5625 4490 * * * 2008 * 3939 * * 4437 1198 5369 5557 * * * 31 0 * * * * * * 4579 0 0 T 32 3962 * 4498 4490 * * * * * * 5109 2280 * 5557 * 3322 1287 4715 * 4536 32 0 * * * * * * 4579 0 0 G 33 5040 * 5857 * * 2790 3965 * 3671 * * 3324 * 4519 4295 1887 3172 * * 3483 33 0 * * * * * * 4579 0 0 S 34 4536 * * * 4609 * * 4174 * * * * * * * 1136 5478 4488 * 1562 34 0 * * * * * * 4579 0 0 W 35 * * * * * * * * * * * * * * * * * * 0 * 35 0 * * * * * * 4579 0 0 Q 36 * * 4439 2585 * * * 5993 3477 3342 * * 4490 1642 * 4776 4006 4295 * 3869 36 0 * * * * * * 4579 0 0 S 37 * 5478 * 5471 * 5576 * * * 3226 1990 6553 3593 * * 2156 2228 5435 * 5575 37 31 5570 * 1000 1000 * * 4579 1000 0 C 38 3187 2069 5780 6292 5273 3105 * * * 4278 * * * * * * * * 1412 4281 38 451 1898 * 1000 1000 * * 4579 3021 0 G 39 3452 * * 6108 * 2253 * 5780 3217 * * * 1249 * 5478 3676 5542 6004 * * 39 164 3217 * 0 * * * 4579 1979 0 T 40 3270 * * * 2960 * 6004 * * 2971 4174 4579 1954 5780 * 3829 2659 5471 * * 40 38 5273 * 1000 1000 * * 4579 1000 0 L 41 4721 4536 * * 1763 * * 1487 * 4138 3556 * * * * 6004 * 3407 5968 * 41 0 * * * * * * 4579 0 0 H 42 * * 2017 3709 4143 2603 4209 * 5542 * * 4367 * 3217 4945 4136 4634 * * 3411 42 0 * * * * * * 4579 0 0 I 43 2427 * 5558 3519 * 1730 * 3117 * 3863 * * * * * 2478 4619 * * * 43 129 4421 4693 0 * * * 4621 1163 0 D 44 4074 * 5245 4319 5911 4218 3674 * 3201 * * * 5792 3482 3225 3280 1790 * * * 44 0 * * * * 0 * 4694 0 1433 A 45 5288 * 1552 4488 * 5653 5149 * * * * 2828 * 3946 2876 2903 4399 * * 5818 45 0 * * * * * * 4699 0 0 E 46 2534 * 4623 1824 * 4833 6107 5579 * 5381 4656 * 2393 5330 * 3002 * 6670 5635 * 46 0 * * * * * * 4699 0 0 S 47 1687 * 3577 4768 * 5055 * 5592 * * * 4143 3974 4285 4433 1903 * 4927 * * 47 0 * * * * * * 4716 0 0 D 48 2587 * 3994 1863 * 4536 * * * 6710 * 5889 * 1526 5724 5447 5654 5855 * * 48 38 5253 * 0 * * * 4552 1282 0 A 49 2622 * * * * * * 2479 * 5124 * * * * * * * 668 * * 49 0 * * * * * * 4552 0 0 I 50 * 5895 * * 4016 * 4814 2197 5478 1118 3309 * * * * * * 4046 * 5436 50 25 5889 * 0 * * * 4552 1000 0 S 51 2047 * * 4660 4532 3244 * * 3896 4536 6097 4478 5200 4232 3487 3076 3590 * * 5124 51 0 * * * * * * 4552 0 0 T 52 2368 * * 827 * * 6170 * 6372 * * 3859 * 4837 4524 6320 5250 5038 * * 52 0 * * * * * * 4554 0 0 L 53 4750 * * * * * * 1676 * 1028 * * * * * * * 2648 * * 53 0 * * * * * * 4554 0 0 E 54 3420 * * 1310 * 3959 4774 * * * * 2769 * 2649 4532 5226 6029 6507 * * 54 0 * * * * * * 4554 0 0 A 55 1914 * * 1936 * 4119 4524 * 5039 * * 3534 * 4565 3473 3676 4477 * * * 55 0 * * * * * * 4554 0 0 C 56 2653 741 * * 3820 * * 4650 * 5508 * * * 5423 * 6100 6716 4370 6147 * 56 0 * * * * * * 4554 0 0 L 57 5249 * * 6300 * * 4029 4260 3293 1212 * * * * 1978 * 4696 5540 * * 57 0 * * * * * * 4554 0 0 V 58 2219 * 4556 6418 * 5508 * * 1752 * * * * 2767 3348 2766 * 5640 * * 58 0 * * * * * * 4554 0 0 D 59 1987 5340 3940 1638 * 5873 5143 * * * * 5985 * 3501 5159 4156 4189 4375 * * 59 0 * * * * * * 4554 0 0 Y 60 * 5471 * * 2292 * 1468 * 5636 * * 3012 * * * * * * * 1902 60 0 * * * * * * 4554 0 0 D 61 3302 4819 6360 4646 * * * * 5621 * * 4993 888 4516 5368 3156 4686 * * * 61 0 * * * * * * 4554 0 0 G 62 4551 * 1834 5134 * 1561 * * 4369 * * 2319 * 5324 * 5779 5821 * * * 62 0 * * * * * * 4554 0 0 E 63 2553 3581 3716 1617 * 4292 2729 * 4891 * * 4750 * * * 4346 * * * 5491 63 0 * * * * * * 4554 0 0 Y 64 * * * * 3390 * 2941 * * * * * * * * * * * 4952 430 64 0 * * * * * * 4554 0 0 V 65 * * * * * * 5472 1575 * * * * * * * * * 640 * * 65 0 * * * * * * 4554 0 0 R 66 * * * * * * 6374 * 4363 * * * * 4073 184 * * * * * 66 0 * * * * * * 4554 0 0 M 67 * 4774 * * * * * 3014 * 984 2985 * * * * * * 2267 * * 67 0 * * * * * * 4554 0 0 V 68 4385 * * * 3699 * * 1628 * 2574 6444 3813 * * * 4819 4560 2164 * * 68 0 * * * * * * 4554 0 0 G 69 1908 6057 * * * 579 * * * * * * * * * 6187 * 4819 * * 69 0 * * * * * * 4554 0 0 I 70 * * * 4819 1335 * * 1586 * * * * * * * * 5873 3021 * 3399 70 0 * * * * * * 4554 0 0 D 71 5471 * 135 * * * * * * * * 3902 * * * * * * * * 71 43 5081 * 1000 1000 * * 4554 1000 0 P 72 4305 * * 6157 * * * 4298 * * * 1889 1594 6132 6351 3017 3356 4813 * * 72 98 3931 * 1000 1000 * * 4398 1478 0 K 73 3816 * * * 4612 3019 5471 3582 2169 * 6140 3706 * 3714 5429 3895 4691 3276 * 4760 73 0 * * * * * * 4398 0 0 G 74 1895 * * * * 4050 5876 * 2716 * * 5974 * * 2752 3182 3058 3806 * 4813 74 31 5568 * 1000 1000 * * 4398 1000 0 K 75 * * * 3108 * * 4169 * 1301 * * 4900 * 1584 4175 * * * * * 75 0 * * * * * * 4398 0 0 R 76 * 4586 * * 5471 5876 * * 4299 * 5643 * * 3829 2110 1682 3779 2630 * * 76 0 * * * * * * 4398 0 0 R 77 * 3771 * * * * * * 4760 * * * 5411 1659 915 * * 5698 * * 77 53 * 4793 * * * * 4398 0 0 V 78 4631 2553 * * * 3246 * 3499 * 5140 * * * * 5777 5464 3105 1286 * * 78 0 * * * * 0 * 4310 0 1000 V 79 1960 5759 * * 5270 5837 4742 4300 * 2414 2519 * * * * 4047 * 2693 * 5996 79 0 * * * * * * 4393 0 0 E 80 2598 * * 1321 * 3711 * * * * 5837 * 5776 * * 1792 4891 * * * 80 0 * * * * * * 4393 0 0 T 81 3972 * * 6136 1354 * * 3230 5164 3181 4596 5955 * 4740 5996 6319 3223 4966 * 5389 81 0 * * * * * * 4393 0 0 I 82 * * * * * * * 1058 * 2287 4170 * * * * * 3342 2639 * * 82 0 * * * * * * 4393 0 0 I 83 2801 * * * * * * 1204 * * * * * * * * * 1243 * * 83 0 * * * * * * 4393 0 0 Q 84 * * * * 6118 * 1719 * * * * 3908 * 1031 * 4331 * * * 3713 84 0 * * * * * * 4393 0 0 R 85 * * 6023 * * * * * 2443 * * * * 4451 510 * 4249 * * * 85 0 * * * * * * 4393 0 0 P 86 4876 * * * * * * * * * * * 50 * * * * * * * 86 0 * * * * * * 4336 0 0 N 87 * * 1418 2444 * * * * * * * 1178 * * * * * * * * 87 0 * * 0 * * * 3321 0 0 //