HHsearch 1.5
NAME  c6fs4A_
FAM   
FILE  c6fs4A_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c6fs4A_.a3m 
DATE  Sat Oct  6 08:27:45 2018
LENG  31 match states, 31 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.4701  2.9708 
SEQ
>ss_dssp
CCHHHHHHHHHHHHHHHHTTCSSSCCCSSCC
>sa_dssp
EEEEEEDDDEEEEEEEDBEEDEEDECEEEEE
>ss_pred
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHCC
>ss_conf
9534888779999999999999501056309
>Consensus
txlteeeknrxxflxkixqxyqkfxxpqyxk
>c6fs4A_
TKLTEEEKNRLNFLKKISQRYQKFALPQYLK
>UniRef50_P39036(176-206:235) Alpha-S2-casein n=8 Tax=Cetartiodactyla RepID=CASA2_PIG   E=0.0001 s/c=1.54 id=69% cov=103%
TELTEEEKNRIKFLNKIKQYYQKFTWPQYIK
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
T 1    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	1
       0	*	*	*	*	*	*	1223	0	0	

K 2    *	*	*	1000	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1223	0	0	

L 3    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1223	0	0	

T 4    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	4
       0	*	*	*	*	*	*	1223	0	0	

E 5    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1223	0	0	

E 6    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1223	0	0	

E 7    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1223	0	0	

K 8    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1223	0	0	

N 9    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1223	0	0	

R 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	10
       0	*	*	*	*	*	*	1223	0	0	

L 11   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1223	0	0	

N 12   *	*	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1223	0	0	

F 13   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1223	0	0	

L 14   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1223	0	0	

K 15   *	*	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1223	0	0	

K 16   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1223	0	0	

I 17   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1223	0	0	

S 18   *	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	*	18
       0	*	*	*	*	*	*	1223	0	0	

Q 19   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1223	0	0	

R 20   *	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	1000	20
       0	*	*	*	*	*	*	1223	0	0	

Y 21   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	21
       0	*	*	*	*	*	*	1223	0	0	

Q 22   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1223	0	0	

K 23   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1223	0	0	

F 24   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1223	0	0	

A 25   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	25
       0	*	*	*	*	*	*	1223	0	0	

L 26   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	1000	*	26
       0	*	*	*	*	*	*	1223	0	0	

P 27   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1223	0	0	

Q 28   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1223	0	0	

Y 29   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	29
       0	*	*	*	*	*	*	1223	0	0	

L 30   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1223	0	0	

K 31   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	0	*	*	*	1223	0	0	

//